@TOME V2.3
(Mar 2018)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VS20: (2017-12-05 )
MNVSENLISNGLKHVLESTPVNSCYMLNDQGKEVPITTAMIRSVCHQLLNQCRAIKK
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------..--.......10.--.----..--..---------..----20.----.......-30-..-.......--40-.........50......------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MN--
V
S
E
N
L
I
S
N
G
L
--
K
----
H
V
--
L
E
---------ST----PV
N
----
S
C
Y
M
LND-Q--GK-EVP
I
T
T
A
--
M
--
I
R
S
V
C
H
Q
L
L
N
Q
C
R
AIKK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
87.92
27%
-
- C- -
-
4G78
-
?
A:
[48-104]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
D
--
D
S
E
K
L
L
N
N
-
M
--
S
----
R
A
--
L
E
---------
Q
V
----
P
V
N
F
K
Q
I
D
A
H
A
H
Q
Q
-
K
--
G
S
-
S
A
S
V
G
A
A
--
R
--
V
K
N
V
C
G
T
F
R
N
F
C
E
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
60.84
23%
-46
- C2 -
-
1HA8
-
MER23_EUPRA
A:
[1-51]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
--
E
C
E
Q
C
F
S
D
G
G
--
D
CTTC
F
N
--
N
G
---------
T
G
----
P
C
A
----
N
C
L
A
G
Y
P
-
A
--
G
C
-
S
------------
N
S
D
C
T
A
F
L
S
Q
C
Y
G
G
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
60.82
28%
-102
- C4 -
-
4K70
1
?
A:
[2-483]
PG
S
M
E
A
L
V
R
A
L
E
EADHAV
A
T
V
V
Q
S
R
I
L
E
F
F
M
AA
G
R
E
T
P
A
G
V
R
G
L
W
A
R
A
L
R
L
A
C
R
A
Y
V
E
TGT
C
E
A
A
V
L
A
E
N
L
A
G
L
A
L
W
RLRHDWDEGT
A
P
L
L
E
L
L
G
V
V
N
G
D
D
T
T
A
A
L
T
E
A
GLRTSAEFG
P
D
A
M
F
R
L
V
S
E
W
C
A
A
F
D
E
A
L
AGARS
A
D
D
V
L
A
A
P
R
V
V
P
PEQTARALVQPRFATLYDM
D
F
V
Q
D
G
L
R
Y
V
A
Q
H
TNWA
L
P
L
A
L
A
V
R
Q
M
Q
NEGLK
P
L
T
R
A
L
F
A
L
T
I
A
D
EFFHDRQN
P
T
L
R
E
Q
F
A
E
A
A
R
A
VDEAALVPVGEVNATPRT
A
V
E
V
R
V
S
A
A
L
A
H
GDAYVRELRPG
T
V
A
R
R
L
R
TDQGVLALLDPGAQAVH
V
A
A
A
A
DLDHTQVDA
T
G
V
W
E
A
V
Q
A
SAS
P
L
Q
--
V
V
E
A
L
V
T
A
G
F
T
R
R
----
H
C
D
L
L
E
---------
R
A
----
V
L
D
----
R
A
P
R
L
T
D
-
A
--
Q
R
-
A
V
G
C
T
-
A
--
V
--
V
G
G
V
V
H
R
L
L
D
D
Y
G
P
G
L
D
Y
V
R
A
Y
T
D
V
A
D
T
LEPLYGDVTAALGLPEK
G
V
E
H
V
V
R
H
C
MAPRPPT
E
H
V
G
A
A
R
A
A
L
L
R
E
V
A
A
A
E
R
R
A
GLAHS
A
A
R
E
A
L
N
T
W
L
A
F
R
A
Q
S
R
WGL------------------------------------------------------------------------------------------------------------------------
33
Fugue
59.41
21%
-31
- C4 -
-
2N3G
-
DRB4_ARATH
A:
[1-72]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
D
HV
Y
K
G
Q
L
Q
A
Y
A
L
--
Q
----
H
N
--
L
E
L
P
V
Y
A
N
E
R
E
G
P
----
P
H
A
----
P
R
F
R
C
N
V
-
T
F
C
G
Q
-
T
F
Q
S
S
E
F
--
F
PT
L
K
S
A
E
H
A
A
A
K
I
A
V
A
S
L
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
56.64
14%
-27
- C4 -
-
1QU7
-
MCP1_ECOLI
A:
[294-520]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RTEQQA
A
S
L
E
Q
T
A
A
S
M
E
Q
L
T
A
T
V
K
Q
N
A
E
N
A
R
Q
A
S
H
L
A
L
S
A
S
E
T
A
Q
R
G
G
K
V
V
D
N
V
V
Q
T
M
R
D
I
S
T
S
S
Q
K
I
A
D
I
I
S
--
V
I
D
G
I
A
F
Q
T
N
--
I
----
L
A
--
L
N
---------
A
A
----
V
E
A
----
A
R
A
--
G
E
-
Q
--
G
R
-
G
F
A
V
V
A
G
--
E
--
V
R
N
L
A
Q
R
S
A
Q
A
A
R
E
I
K
S
L
I
E
D
S
V
G
K
V
D
V
G
S
T
L
V
E
S
A
G
E
T
M
A
E
I
V
S
A
V
T
R
V
T
D
I
M
G
E
I
A
S
A
S
D
E
Q
S
R
G
I
D
Q
V
G
L
A
V
A
E
M
D
R
V
T
Q
Q
N
A
A
L
V
E
Q
S
A
A
A
A
A
A
L
E
E
Q
A
S
R
L
T
E
A
V
A
V
FRIQQQ-------------------------------------------------------------------------------------------------------------
32
Fugue
53.44
24%
41
- C4 -
-
5TC1
-
MATA_BPMS2
M:
[1-393]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MRAFSTLDRENETFVYRSNWTPGRFNSTGAKTKQWHYPSPYSRGALSVTSIFSLDARSCYSL
F
P
--
V
S
Q
N
L
T
Y
I
E
V
--
P
----
Q
N
--
V
A
---------
N
R
----
A
S
T
----
E
V
L
Q
K
V
T
-
Q
--
G
N
F
N
L
G
V
A
L
A
--
E
--
A
R
S
T
A
S
Q
L
A
T
Q
T
I
A
L
V
K
AYTAARRGNWRQALRYLALNEDRKFRSKHVAGRWLELQFGWLPLMSDIQGAYEMLTKVHLQEFLPMRAVRQVGTNIKLDGQTTCNISRRIVIWFYINDARLAWLSSLGILNPLGIVWEKVPFSFVVDWLLPVGNMLEGLTAPVGCSYMSGTVTDVITGESIIQGTAKAQISAMHRGVQSVWPTTGAYVKSPFSMVHTLDALALIRQRLSR
5
HHSearch
52.96
18%
-158
- C4 -
-
1IZ1
-
?
B:
[25-76]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
H
--
V
S
Q
P
P
I
T
R
Q
M
--
Q
-----
A
--
L
E
---------------
A
D
L
----
G
V
V
L
L
E
R
-
S
--
H
R
-
G
I
E
L
T
A
A
GH
A
--
F
L
E
D
A
R
R
I
L
E
L
A
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
50.41
20%
-202
- C4 -
-
1TV3
-
MTMB1_METBA
A:
[60-99]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
L
F
K
A
G
F
--
E
-----
M
--
L
L
---------
E
-------
C
----
G
I
Y
C
T
D
--
T
--
H
R
-
I
V
K
Y
T
E
D
--
E
--
I
W
D
A
I
N
N
V
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
50.33
18%
-134
- C4 -
-
1WI9
-
A:
[129-167]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
--
L
R
T
Q
D
A
I
N
R
I
--
Q
----
D
L
--
L
T
---------
E
G
-----
T
L
----
T
G
-
V
I
D
D
-
R
--
G
K
-
F
I
Y
I
T
P
S
--
G
--
P
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
50.12
25%
-142
- C3 -
-
4O4A
-
?
A:
[88-107]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
T
V
N
K
-
E
--
G
Q
-
R
T
K
I
D
S
S
--
C
--
I
H
F
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
49.05
25%
-133
- C3 -
-
4O4A
-
?
B:
[88-107]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
T
V
N
K
-
E
--
G
Q
-
R
T
K
I
D
S
S
--
C
--
I
H
F
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
48.88
17%
-98
- C4 -
-
2IYJ
-
DSBC_ECOLI
B:
[31-74]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
T
V
L
T
N
S
G
V
--
L
----
Y
I
--
T
D
D--------
G
K
----
H
I
I
----
Q
G
P
M
Y
D
V
-
S
--
G
T
A
P
V
N
V
T
N
K
--
M
--
L
L
K
Q
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
47.61
11%
25
- C3 -
-
2P7O
-
FOSX_LISMO
A:
[83-130]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
E
R
I
K
A
L
G
V
--
E
----
M
K
--
P
E
---------
R
P
RVQG
E
G
R
----
S
I
Y
F
Y
D
F
-
D
--
N
H
-
L
F
E
L
H
A
G
--
T
--
L
E
E
R
L
K
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
47.42
21%
-78
- C4 -
-
5FLG
1
BIOW_BACSU
A:
[104-137]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
--
V
S
R
D
V
I
E
K
A
Y
--
E
----
Q
I
--
P
E
---------
W
S
----
D
V
R
----
G
A
V
L
F
D
I
H
T
--
G
K
-
R
M
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
47.36
15%
-215
* C3 *
-
3FIF
-
YGDR_ECOLI
A:
[31-56]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
Y
H
D
Q
-
Q
--
G
N
-
A
M
Q
I
N
R
D
--
D
--
V
S
Q
I
I
E
R
L
E
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
46.98
20%
-190
- C4 -
-
1NTH
-
MTMB1_METBA
A:
[60-99]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
L
F
K
A
G
F
--
E
-----
M
--
L
L
---------
E
-------
C
----
G
I
Y
C
T
D
--
T
--
H
R
-
I
V
K
Y
T
E
D
--
E
--
I
W
D
A
I
N
N
V
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
45.32
18%
-151
- C4 -
-
1IXC
-
?
A:
[25-76]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
H
--
V
S
Q
P
P
I
T
R
Q
M
--
Q
-----
A
--
L
E
---------------
A
D
L
----
G
V
V
L
L
E
---------
I
E
L
T
A
A
G
H
A
--
F
L
E
D
A
R
R
I
L
E
L
A
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
44.19
15%
-222
- C3 -
-
3FIF
-
YGDR_ECOLI
G:
[31-56]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
Y
H
D
Q
-
Q
--
G
N
-
A
M
Q
I
N
R
D
--
D
--
V
S
Q
I
I
E
R
L
E
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
44.15
33%
-17
- C4 -
-
1BTS
2
?
?:
[1-21]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
--
V
S
E
L
L
I
S
T
A
V
--
Q
----
G
I
--
L
F
---------
A
L
----
L
G
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
44.15
33%
-17
* C4 *
-
1BTS
2
A:
[1-21]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
--
V
S
E
L
L
I
S
T
A
V
--
Q
----
G
I
--
L
F
---------
A
L
----
L
G
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------