@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VS78: (2017-12-06 )
MIVNIVNEWQIATAVNGNEINVRIVPHVRKQNSLDGYRWVEVGKKIQLQTGEEIELNQDGKSFYAGFNQLYRLNTYC
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.....--..--..10........20.....--------.--..30.-.-----......40.-..-------.....50------......------..60...--.--.--.-..70......-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
V
N
I
--
V
N--E
W
Q
I
A
T
A
VNG
N
E
I
N
V
R
I
V
P--------H--VRKQN-S-----LDG
Y
R
W
VEV-G
K
-------
K
I
Q
LQTG------
E
E
I
E
LN------QDG
K
S
F
Y
--
A
--
G
--
F
-
N
Q
L
Y
RLNTYC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
39
Fugue
62.33
19%
16
- C8 -
-
1GH5
-
?
A:
[1-87]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
N
R
T
DC
N
E
--
N
S
Y
L
E
I
H
N
N
E
G
R
D
T
L
C
F
A
N
--------
A
--
G
T
M
P
V
-
A
-----
I
Y
G
V
N
W
V
E
S
-
G
N
N
V
V
----
T
L
Q
F
Q
R
N
LSDPR
L
E
T
I
T
L
Q
------
K
W
G
S
W
N
P
--
G
--
H
--
I
-
H
E
I
L
S
I
R
I
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
61.83
42%
-192
* C4 *
-
4CW4
-
FABY_PSEAE
A:
[137-178]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
S
I
A
P
A
E
D
G
-
E
V
L
V
S
I
----------
H
--
E
R
C
E
F
-
K
-----
V
D
S
Y
R
A
L
T
V
-
K
S
-------
A
G
Q
L
P
T
G
------
F
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
42
Fugue
56.41
24%
-0
* C5 *
-
4Q6O
5
?
A:
[21-437]
MIEKAPTNVEDRDK
A
P
H
L
L
L
L
A
GIQGDE
P
G
G
F
N
A
T
N
L
F
L
M
HYSVL
K
G
L
V
E
V
VPVLN
K
P
S
M
L
R
NHRGLYGDMNRKFAALDKNDPE
Y
P
T
I
Q
E
I
K
S
L
I
A
KPSID
A
V
L
H
L
H
D
G
G
G
YYRPVYVDAMLNPKRWGN
C
F
I
I
DQDEVKGAKFPN
L
L
A
F
A
N
N
T
I
E
S
I
N
A
H
LLHPIE
E
Y
H
L
K
N
TRTAQGD
T
E
M
Q
K
A
L
T
F
Y
A
I
N
Q
KKS
A
F
A
N
E
A
S
KELP
L
A
S
R
V
F
Y
H
L
Q
A
I
E
G
L
L
N
Q
L
NI
P
F
K
R
DFDLN
P
N
S
V
H
A
L
I
N
DKN
L
W
A
K
I
SSLPKMPLFNLRPKLNH
F
P
L
P
H
NTKIPQI
P
I
E
S
NA
Y
I
V
G
L
--
V
K
--
N
K
Q
E
V
F
L
K
Y
G
N
K
L
M
T
R
L
S
P
--------
F
--
Y
I
E
F
D
P
S
-----
L
E
E
V
K
M
Q
I
D
-
N
K
-------
D
Q
M
V
K
I
G
------
S
V
V
E
V
K
------
E
---
S
F
Y
--
I
--
H
--
A
-
M
D
N
I
R
A
N
V
I
G
FSVSNENKPNEAGYTIKFKDFQKRFSLDKQER
I
Y
R
I
E
F
Y
KNNAFS
G
M
I
L
V
K
F
V--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
55.50
29%
39
* C8 *
-
3CEW
-
?
A:
[16-83]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
H
D
S
L
A
L
T
G
A
E
V
S
I
N
H
L
P
A
GAGVP
F
V
H
--
S
H
K
Q
N
-
E
E
I
Y
G
I
L
S
G
K
G
F
I
T
I
D
G
E
-------
K
I
E
L
Q
A
G
------
D
W
L
R
I
A
------
P
D
G
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
54.34
33%
-146
* C9 *
-
2K6Y
-
?
A:
[67-102]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
V
P
P
--------
K
--
G
R
V
E
L
-
K
-----
P
G
G
Y
H
F
M
L
L
-
G
L
-------
K
R
P
L
K
A
G
------
E
E
V
E
L
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
53.92
33%
-149
- C9 -
-
2K6W
-
?
A:
[67-102]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
V
P
P
--------
K
--
G
R
V
E
L
-
K
-----
P
G
G
Y
H
F
M
L
L
-
G
L
-------
K
R
P
L
K
A
G
------
E
E
V
E
L
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
52.28
33%
-115
- C9 -
-
2K70
-
?
A:
[67-102]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
V
P
P
--------
K
--
G
R
V
E
L
-
K
-----
P
G
G
Y
H
F
M
L
L
-
G
L
-------
K
R
P
L
K
A
G
------
E
E
V
E
L
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
51.69
33%
-118
- C9 -
-
2K6Z
-
?
A:
[67-102]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
V
P
P
--------
K
--
G
R
V
E
L
-
K
-----
P
G
G
Y
H
F
M
L
L
-
G
L
-------
K
R
P
L
K
A
G
------
E
E
V
E
L
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
50.99
17%
-98
- C7 -
-
2QPZ
1
NDOA_PSEPU
A:
[2-44]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
K
W
I
E
A
-
V
A
-------
L
S
D
I
L
E
G
------
D
V
L
G
V
T
------
V
E
G
K
E
L
A
--
L
Y
E
V
--
E
-
G
E
I
Y
A
T
D
N
L
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
41
Fugue
46.25
15%
-
- C6 -
-
4RFX
-
DCTN1_CHICK
A:
[432-531]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
V
E
T
L
T
E
R
N
L
D
L
E
E
K
V
R
E
L
R
E
T
V
--
G
D
--
L
E
A
M
N
E
M
N
D
E
L
Q
E
N
A
R
E
T
E
--------
L
E
-
L
R
E
Q
L
-
D
-----
L
A
A
A
R
V
R
E
A
-
E
K
-------
R
V
E
A
A
Q
E
------
T
V
A
D
Y
Q
------
Q
T
I
K
K
Y
R
--
E
--
L
--
T
-
A
H
L
Q
D
V
N
R
E
L
M
S
Q
Q---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
46.15
42%
13
- C3 -
-
1SFE
-
A:
[131-169]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
A
S
A
C
A
A
N
K
L
A
I
V
I
P
C
--------
H
RV
V
R
G
D
G
-
S
-----
L
S
G
Y
R
W
-
G
V
-
S
R
-------
K
A
Q
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
Fugue
44.78
19%
30
- C5 -
-
2LVC
-
A:
[1-90]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------H
M
P
V
H
I
--
V
D
PR
E
H
V
F
V
H
A
I
T
S
E
C
----
V
M
L
--------
A
--
C
E
V
D
R
-
E
-----
D
A
P
V
R
W
Y
K
D
-
G
Q
EVEESDF
V
V
L
E
N
E
G
------
P
H
R
R
L
V
L
PATQP
S
D
G
G
E
F
Q
--
C
--
V
--
A
G
D
E
C
A
Y
F
T
V
T
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
43.77
15%
-64
- C7 -
-
2JZA
-
?
A:
[2-46]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
Q
W
T
T
V
-
C
K
-------
L
D
D
I
L
P
G
------
T
G
V
C
A
L
------
V
E
Q
Q
Q
I
A
--
V
F
R
P
RN
D
-
E
Q
V
Y
A
I
S
N
I
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
43
Fugue
43.13
20%
16
* C6 *
-
4A0G
2
BIODA_ARATH
A:
[27-831]
---------------------------------------------------------P
F
H
L
P
LN
H
P
T
Y
L
I
W
S
ANTSLG
K
T
L
V
S
T
G
I
A
A
S
F
L
L
QQPSSSA
T
K
L
L
Y
L
KPIQTGFPSDS
D
S
R
F
V
F
S
K
L
D
S
L
S
L
R
R
Q
I
P
I
S
I
S
N
S
V
LHSS
L
P
A
A
K
S
L
GLN
V
E
V
S
ESG
M
C
S
L
N
F
R
D
E
K
T
V
T
G
A
P
E
L
L
C
K
T
L
Y
A
W
E
AAIS
P
H
L
A
A
E
R
E
N
A
T
V
E
D
S
V
V
L
Q
M
I
E
K
C
L
K
E
E
MD
L
L
C
L
V
E
T
A
G
GVASPGPSGTL
Q
C
D
L
Y
RPFR
L
P
G
I
L
VGDGRLG
G
I
S
G
T
I
A
A
Y
E
S
L
K
L
R
GYDIA
A
V
V
F
E
D
H
G
L
--
V
N
--
E
V
P
L
T
S
Y
L
-
R
N
K
V
P
V
L
V
L
P
--------
P
--
V
P
K
D
P
-
S
-----
D
D
L
I
E
W
F
V
E
-
S
D
-------
G
V
F
K
A
L
K
------
E
T
M
V
L
A
------
N
L
E
R
--
L
--
E
--
R
--
L
-
N
G
M
A
K
L
A
G
E
V
FWWPFTQHKLVHQETVTVIDSRCGENFSIYKASDNS
S
L
S
Q
Q
F
DACASWWT
Q
G
P
D
P
T
F
Q
A
E
L
A
R
E
M
G
Y
T
A
A
R
FGHVMFPENVY
E
P
A
L
K
C
A
E
L
L
L
D
GVGKGWAS
R
V
Y
F
S
D
N
G
S
T
A
I
E
I
A
L
K
M
A
F
R
K
F
C
V
D
H
NFI
V
V
K
V
I
A
L
RGSYHGDT
L
G
A
M
E
A
QAPSPYTGFLQQPWYTGRGL
F
L
D
P
P
T
V
F
L
S
NG
S
W
N
I
S
L
P
ESFSEIAPEYGTFTS
R
D
E
I
F
DKSRDAS
T
L
A
R
I
Y
S
A
Y
L
S
K
H
LAHVG
A
L
I
I
EPVIHGAGGMHMVD
P
L
F
Q
R
V
L
V
N
E
C
R
N
R
K
I
P
V
I
F
DEVFTGFWRLGVETTTELLGCKPD
I
A
C
F
A
KLLTGGM
V
P
L
A
V
T
L
A
T
D
A
V
F
D
S
F
SGDSKLKALLHGHSYSAH
A
M
G
C
A
T
A
A
K
A
I
Q
W
F
K
DPETNHNITSQGKTLRELWD
E
E
L
V
Q
Q
I
S
S
HSAVQ
R
V
V
V
I
GT
L
F
A
L
E
L
KS
L
Y
A
K
S
L
L
I
M
L
R
E
D
G
I
F
T
R
P
LGN
V
I
Y
L
M
C
G
PCTS
P
E
I
C
R
R
L
L
T
K
L
Y
K
R
L
G
E
F
NRT
31
HHSearch
42.17
10%
-124
- C7 -
-
3C0D
-
?
A:
[4-47]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
K
V
K
L
-
C
Q
-------
L
D
D
L
M
P
F
------
I
G
A
T
V
L
------
I
E
G
E
R
V
A
--
L
F
Y
I
P-
D
-
S
G
V
Y
A
V
Q
D
W
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
HHSearch
41.68
20%
-57
* C7 *
-
2DE6
1
CARAC_PSERE
E:
[3-46]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
I
W
L
K
V
-
C
A
-------
A
S
D
M
Q
P
G
------
T
I
R
R
V
N
R-----
V
G
A
A
P
L
A
VY
R
--
V
--
G
-
D
Q
F
Y
A
T
E
D
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
HHSearch
41.33
10%
-129
- C7 -
-
3C0D
-
?
F:
[4-47]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
K
V
K
L
-
C
Q
-------
L
D
D
L
M
P
F
------
I
G
A
T
V
L
------
I
E
G
E
R
V
A
--
L
FY
I
P-
D
-
S
G
V
Y
A
V
Q
D
W
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
41.28
23%
-115
- C7 -
-
3GCE
-
?
A:
[9-35]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
T
P
V
R
V
-
A
T
-------
L
D
Q
L
K
P
G
------
V
P
T
A
F
D
------
V
D
G
D
E
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
40.71
19%
-140
- C7 -
-
2WTP
2
?
A:
[71-97]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
-------
Y
V
N
V
D
S
G
------
E
T
V
A
F
R
------
A
G
E
K
I
V
A
--
W
--
T
--
F
-
A
Q
M
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
40.53
7%
-81
- C7 -
-
2JO6
-
NIRD_ECOLI
A:
[1-46]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
Q
W
K
D
I
-
C
K
-------
I
D
D
I
L
P
E
------
T
G
V
C
A
L
------
L
G
D
E
Q
V
A
--
I
F
R
P
YH
S
-
D
Q
V
F
A
I
S
N
I
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------