@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VSU8: (2017-12-10 )
MPTGFLVKFSQNFWRFKMNGYLKIGSVLPAGPAYKKLSDITLLPCFLKDGLAAGYALKEHGAFNFVTGAASEVIGTPLKFGTTGAFLNKDSYIDTGVKKSESFTYVVIAKKTANQGFLIGDYIHSTVDPNGKSRGTTISSRGNVYAAVPTGTATAFTQQSSNINDELTLFIYSATKASSTSYLQVYANLQKGVDVFLNKSATDLVNVTNNTVGIGWSKKADTLPWAVIPEIAFACVYNTGFTQAEIESWAQEIRQDLAAFKNLVI
Atome Classification :
(20 SA)
---------------------------.........10..-....-..---20........30...-.....40.---.......50---------------------.........60-------........70........80........-------90......---..100...-----------......110........----120.--.....------.130.......140-----......----------------------.---150...------....160.......170.......180.......-----------190.......200...---------------....210..--------------------------.....220-----.--------------..-.--------.....230.......240.......250...--.----------...260...----------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
---------------------------MPT
G
F
L
V
K
FSQ
N
F
-
W
R
F
K-MN---
G
Y
L
K
IGSVLPAGP
A
Y
-KKLSD
I
T
L
---
L
P
C
F
L
KDG----------------------LAAG
Y
A
LKEHG-------A
F
N
F
VTG
A
A
S
E
VIGTPLKFGTT
G
A
FLNK-------DSYIDTGV---KKS--E
S
F
-----------
T
Y
V
V
I
A
K-KTANQG
F
L
I
----
G
D
Y
I
--HSTVD------PNGKSRG
T
T
ISSRG-----
N
V
Y
A
AV----------------------P---TGT
A
T
A
------
F
TQQSSNIND
E
L
T
L
F
I
Y
SATKASS
T
S
Y
L
Q
V
Y
A
N
L
-----------
Q
K
G
V
D
V
F
LNKSA
T
D
L
V
---------------
N
VTN
N
T
V
GI--------------------------GWSKKA-------D--------------TL-P--------
W
A
V
I
P
E
I
A
F
A
C
V
YNTGF
T
Q
A
E
I
E
S
W
A
Q
E
I
R
Q
--
D
----------
L
A
A
F
K
NLVI----------------------------------------
49
Fugue
65.53
21%
4
- C1 -
-
5JDA
12
?
A:
[1-359]
-------------------------SM
L
P
S
Y
D
F
F
I
H
P
M
N
L
-
V
E
L
K
-
K
D
---
I
W
S
D
--
S
P
V
P
A
K
L
T
Y
G
K
K
K
Y
D
I
D
I
---
V
Y
------------------------------
R
G
A
H
I
R
E
------------
F
E
K
K
S
Y
H
V
M
F
Y
K
P
K
K
F
Q
G
A
K
E
F
H
L
N
-------
S
E
F
M
D
P
S
L
I
R
N
K
L
S
--
L
D
F
F
H
D
I
G
V
L
S
P
K
S
Q
H
V
F
I
K
I
-
N
G
Q
I
Q
G
V
Y
L
----
Q
L
E
S
VD
E
N
F
L
K
------
N
R
G
L
P
S
G
S
I
Y
Y
A
I
D
DDANF
S
L
M
S
E
R
----------------------
D
---
K
D
V
K
T
E
LFAGYE
F
K
Y
S
N
E
N
S
E
E
Q
L
S
E
F
V
F
Q
A
N
A
L
S
R
E
A
Y
E
K
E
I
G
K
F
-----------
L
-
H
V
D
K
Y
L
R
W
L
A
G
V
I
F
T
QNFDGFVHN
Y
A
L
Y
H
N
D
E
T
N
L
F
E
V
I
P
W
DYDATWGRDVQGRPLNH
E
Y
I
R
IQ
G
Y
N
T
L
S
-------
A
--------------
R
L
-
L
D
I
P
I
F
R
K
Q
Y
R
S
I
L
E
E
I
L
A
E
Q
F
T
V
S
F
M
M
P
K
V
E
S
L
C
E
S
I
R
P
--
Y
L
L
Q
DPYMKEK
L
E
T
F
D
Q
E
A
D
M
I
E
E
Y
I
N
K
R
R
K
Y
I
Q
D
H
LHELD-------------------
51
Fugue
55.90
19%
-26
- C3 -
-
1DZR
5
RMLC_SALTY
A:
[1-183]
------------------------------------
M
M
I
V
-
I
K
T
A
-
I
P
---
D
V
-------------------
L
I
L
---
E
P
K
V
F
G
D
E
-----------------------------
R
G
F
F
-------
F
E
S
Y
N
Q
Q
T
F
E
E
L
I
G
R
K
V
T
F
-----------------
V
Q
D
N
H
S
K
---
S
K
K
--
N
V
L
-----------
R
G
L
H
F
Q
R
-
G
E
N
A
Q
G
K
L
V
R
C
AV
G
E
V
F
--
D
V
A
V
D
IRKESP
T
F
G
Q
W
V
G
V
N
L
S
A
E
N
-----
K
R
Q
L
W
I
----------------------
P
---
E
G
F
A
H
G
------
F
V
T
L
S
-----
E
Y
A
E
F
L
Y
K
A
T
N
------------------------------
Y
Y
S
P
S
S
E
G
S
I
---------------
L
W
N
D
E
A
I
G
I
--------------------------
E
W
P
F
S
Q
-------
L
--------------
P
E
-
L
-------------------------------
S
A
K
D
A
A
A
P
--
L
----------
L
D
Q
A
L
L
T
E
-----------------------------------------
50
Fugue
53.01
16%
33
* C3 *
-
4CFP
3
MLTC_ECOLI
A:
[15-341]
DTN
G
F
D
I
L
M
G
Q
F
A
H
N
I
E
N
I
WGFKEV
V
I
A
G
P
K
D
Y
V
K
Y
T
D
Q
Y
Q
T
R
S
H
-
I
N
FDD
G
T
I
T
I
E
T
I
--
A
G
T
E
P
-
A
A
H
L
R
R
A
I
---
I
K
T
L
L
M
G
D
----------------------
D
P
S
S
V
D
L
Y
S
D
V
DD
I
T
I
S
-
K
E
P
F
L
Y
G
Q
V
V
D
N
T
G
Q
P
I
R
W
E
G
R
A
S
N
F
A
D
-------
Y
L
L
K
N
R
L
K
---
S
R
S
NG
L
R
I
-----------
I
Y
S
V
T
I
N
-
M
V
P
N
H
L
D
K
R
----
A
H
K
Y
--
L
G
M
V
R
------
Q
A
S
R
K
Y
G
V
D
E
S
L
I
L
-----
A
I
M
Q
T
Q
SSFNPY
A
V
S
RSDALGLMQVVQH
T
---
A
G
K
D
V
F
------
R
S
Q
G
K
S
G
T
P
S
R
S
F
L
F
D
P
A
S
N
I
D
T
G
T
A
Y
L
A
M
L
N
N
V
YLGGIDN
P
T
S
R
R
Y
A
V
I
T
A
Y
N
G
G
A
G
S
V
L
---------------
R
V
F
S
N
D
-
K
I
--------------------------
Q
A
A
N
I
I
-------
N
--------------
T
M
T
P
--------
G
D
V
Y
Q
T
L
T
T
------
R
H
P
S
A
E
S
R
R
Y
L
Y
K
V
N
T
--
A
----------
Q
K
S
Y
R
R
R
------------------------------------------
16
PsiBlast_PDB
48.66
29%
-112
- C5 -
-
5MGC
1
BGALA_ASPNC
A:
[575-654]
------------------------------------------------------------------------------
V
P
Q
L
A
T
D
G
----------------------
T
S
P
G
F
S
T
P
E
K
V
-------
A
S
S
I
I
V
K
A
G
Y
L
V
R
T
A
Y
L
K
--
G
S
G
L
Y
L
T
A
-------
D
F
N
A
T
T
S
V
---
E
--------------------
V
I
G
V
P
-
S
T
A
K
N
L
F
I
N
----
G
D
K
T
--
S
H
T
V
D
------
K
N
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
47.96
29%
-110
- C5 -
-
5JUV
1
BGALA_ASPNC
A:
[575-654]
------------------------------------------------------------------------------
V
P
Q
L
A
T
D
G
----------------------
T
S
P
G
F
S
T
P
E
K
V
-------
A
S
S
I
I
V
K
A
G
Y
L
V
R
T
A
Y
L
K
--
G
S
G
L
Y
L
T
A
-------
D
F
N
A
T
T
S
V
---
E
--------------------
V
I
G
V
P
-
S
T
A
K
N
L
F
I
N
----
G
D
K
T
--
S
H
T
V
D
------
K
N
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
47.94
29%
-113
- C5 -
-
5IHR
1
BGALA_ASPNC
A:
[575-654]
------------------------------------------------------------------------------
V
P
Q
L
A
T
D
G
----------------------
T
S
P
G
F
S
T
P
E
K
V
-------
A
S
S
I
I
V
K
A
G
Y
L
V
R
T
A
Y
L
K
--
G
S
G
L
Y
L
T
A
-------
D
F
N
A
T
T
S
V
---
E
--------------------
V
I
G
V
P
-
S
T
A
K
N
L
F
I
N
----
G
D
K
T
--
S
H
T
V
D
------
K
N
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
47.74
29%
-109
- C5 -
-
5IFP
1
BGALA_ASPNC
A:
[575-654]
------------------------------------------------------------------------------
V
P
Q
L
A
T
D
G
----------------------
T
S
P
G
F
S
T
P
E
K
V
-------
A
S
S
I
I
V
K
A
G
Y
L
V
R
T
A
Y
L
K
--
G
S
G
L
Y
L
T
A
-------
D
F
N
A
T
T
S
V
---
E
--------------------
V
I
G
V
P
-
S
T
A
K
N
L
F
I
N
----
G
D
K
T
--
S
H
T
V
D
------
K
N
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
47.65
29%
-109
* C5 *
-
5MGD
1
BGALA_ASPNC
A:
[575-654]
------------------------------------------------------------------------------
V
P
Q
L
A
T
D
G
----------------------
T
S
P
G
F
S
T
P
E
K
V
-------
A
S
S
I
I
V
K
A
G
Y
L
V
R
T
A
Y
L
K
--
G
S
G
L
Y
L
T
A
-------
D
F
N
A
T
T
S
V
---
E
--------------------
V
I
G
V
P
-
S
T
A
K
N
L
F
I
N
----
G
D
K
T
--
S
H
T
V
D
------
K
N
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
46.72
29%
-105
- C5 -
-
5IFT
1
BGALA_ASPNC
A:
[575-654]
------------------------------------------------------------------------------
V
P
Q
L
A
T
D
G
----------------------
T
S
P
G
F
S
T
P
E
K
V
-------
A
S
S
I
I
V
K
A
G
Y
L
V
R
T
A
Y
L
K
--
G
S
G
L
Y
L
T
A
-------
D
F
N
A
T
T
S
V
---
E
--------------------
V
I
G
V
P
-
S
T
A
K
N
L
F
I
N
----
G
D
K
T
--
S
H
T
V
D
------
K
N
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
Fugue
45.40
11%
24
- C4 -
-
2G29
-
NRTA_SYNY3
A:
[28-412]
---NAPEVT
T
A
K
L
G
F
I
ALTDA
A
P
L
I
I
A
K
E
K
G
F
Y
A
K
Y
G
M
P
D
-
V
E
V
L
K
Q
A
---
S
W
G
T
T
R
D
N
L
V
L
G
S
A
S
-
G
G
I
D
G
A
H
I
LTP
M
P
Y
L
I
T
M
G
TVTDG
K
P
T
P
M
Y
I
LARLN
V
N
G
Q
G
I
Q
L
G
N
N
Y
K
D
L
K
VGTDAAP
L
K
E
A
F
A
K
V
T
D
P
K
V
A
M
T
F
P
G
G
T
H
D
M
W
I
R
Y
W
L
A
A
G
GM
E
P
G
K
D
F
S
T
---
I
V
V
--
P
P
A
-----------
Q
M
V
A
N
V
K
-
V
N
A
M
E
S
F
C
V
----
G
E
P
W
--
P
L
Q
T
V
------
N
Q
G
V
--
G
Y
Q
A
L
T
T
G
-----
Q
L
W
K
D
H
----------------------
P
EKA
F
G
M
R
A
D
------
W
V
D
Q
N
P
K
A
A
K
A
L
L
M
A
V
M
E
A
Q
Q
W
C
D
Q
A
E
N
K
E
E
M
C
Q
-----------
I
L
S
K
R
E
W
F
K
V
P
F
E
D
I
I
---------------
D
R
S
K
G
I
Y
N
F
--------------------------
G
N
G
Q
E
T
-------
F
E
D
QEIMQKYWVDNA
S
Y
-
P
--------
Y
K
S
H
D
Q
W
F
L
T
E
N
I
R
W
G
Y
L
P
A
S
-
T
D
T
K
A
I
V
D
K
VN
R
----------
E
D
L
W
R
E
A
A
Q
A
L
EVPADQIPSSPSR
G
I
E
T
F
FDG
I
T
F
D
PEN
P
Q
A
Y
L
D
S
LKI
53
Fugue
44.40
12%
5
- C2 -
-
2DI3
-
?
A:
[2-232]
----------------------------
S
V
K
A
H
E
S
V
M
D
W
V
-
T
E
E
L
-
R
S
---
G
R
L
K
I
G
D
H
L
P
S
E
R
A
L
-
S
E
T
L
G
V
S
--------
R
S
S
L
----------------------
R
E
A
L
R
V
L
E
A
L
G
-------
T
I
S
T
A
T
G
--------------
S
G
P
R
S
G
T
-------
I
I
T
A
A
P
G
Q
---
A
L
S
--
L
S
V
-----------
T
L
Q
L
V
T
N
Q
V
G
H
H
D
I
Y
E
T
----
R
Q
L
L
--
E
G
W
A
A
------
L
H
S
S
A
E
R
G
D
W
D
V
A
E
-----
A
L
L
E
K
M
----------------------
D
---
D
P
S
----------
L
P
L
E
D
F
L
R
F
D
A
E
F
H
V
V
I
S
K
G
A
E
N
P
L
I
S
T
L
M
E
A
L
-----------
R
L
S
V
A
D
H
T
V
A
R
A
R
A
L
P
---------------
D
--
W
R
A
T
S
A
--------------------------
R
L
Q
K
E
H
-------
R
--------------
A
I
-
L
--------
A
A
L
R
A
G
-------
E
S
T
V
A
A
T
L
I
K
E
H
I
E
G
Y
Y
E
--
E
----------
T
A
A
A
E
A
L
------------------------------------------
40
HHSearch
44.26
14%
-152
- C4 -
-
4O1W
1
?
C:
[58-78]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
M
V
M
A
L
S
P
A
D
M
E
N
L
A
A
Y
Y
A
N
--
M
-----------------------------------------------------------
42
HHSearch
43.37
11%
-96
- C4 -
-
1A8D
-
A:
[164-244]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
N
K
W
V
F
I
T
I
T
N
D
R
L
S
---
S
A
N
L
Y
--------------
I
N
G
V
L
M
G
S
A
E
I
T
G
L
G
A
---------------
I
R
E
D
N
N
I
T
L
--------------------------
K
L
D
R
C
N
-------
N
--------------
N
N
-
Q
---------
Y
--
V
S
I
D
K
F
R
I
F
C
K
A
L
N
P
K
E
I
E
K
L
Y
T
S
-----------------------------------------------------------------
27
HHSearch
41.52
19%
-88
- C4 -
-
5HON
1
?
A:
[129-206]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
T
G
Q
W
T
H
L
A
F
S
V
D
N
G
----
A
V
K
V
Y
--------------
I
N
G
V
E
K
F
S
G
T
N
F
P
D
V
F
---------------
T
G
A
N
A
S
F
A
L
--------------------------
G
V
N
W
W
D
----------------------
P
------------
P
F
K
G
L
I
D
E
L
R
I
Y
E
G
A
L
T
P
S
Q
V
T
D
L
A
Q
------------------------------------------------------------------
39
HHSearch
39.95
14%
-91
- C4 -
-
4O1W
1
?
D:
[58-78]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
M
V
M
A
L
S
P
A
D
M
E
N
L
A
A
Y
Y
A
N
--
M
-----------------------------------------------------------
28
HHSearch
39.70
15%
-28
- C4 -
-
4PBP
-
?
C:
[93-181]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
S
T
L
Q
T
H
L
C
V
A
W
E
S
A
T
G
--
L
T
A
F
W
--------------
M
D
G
R
R
S
L
H
Q
V
Y
R
K
G
Y
S
---------------
I
R
S
G
G
T
V
V
L
--------------------------
G
Q
D
P
D
S
YVGSFDV
D
--------------
Q
------------
S
F
V
G
E
I
A
N
L
Q
M
W
D
Y
V
L
S
S
A
Q
I
K
A
V
Y
Y
N
-----------------------------------------------------------------
5
PsiBlast_PDB
39.36
30%
-5
- C6 -
-
5GTQ
2
?
A:
[171-229]
-------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
K
-------
M
Y
Y
I
D
S
G
K
---
R
R
V
--
D
E
Y
-----------
D
Y
D
A
S
T
L
-
S
I
S
N
Q
R
P
L
F
----
T
F
E
K
--
H
E
V
---------
P
G
Y
P
D
G
Q
T
I
D
E
E
G
-----
N
L
W
V
A
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
39.27
30%
0
- C6 -
-
5D9C
1
?
A:
[171-229]
-------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
K
-------
M
Y
Y
I
D
S
G
K
---
R
R
V
--
D
E
Y
-----------
D
Y
D
A
S
T
L
-
S
I
S
N
Q
R
P
L
F
----
T
F
E
K
--
H
E
V
---------
P
G
Y
P
D
G
Q
T
I
D
E
E
G
-----
N
L
W
V
A
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
39.26
24%
-105
- C4 -
-
2O20
-
?
A:
[62-124]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
T
T
-----
T
V
G
V
I
L
----------------------
P
---
T
I
T
S
T
Y
------
F
A
A
I
T
R
G
V
D
D
I
A
S
M
Y
K
Y
N
M
I
L
A
N
S
D
N
D
V
E
---
K
E
-----------
E
K
V
L
E
T
F
L
S
K
Q
V
D
G
I
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
39.11
30%
-8
- C6 -
-
5GX2
2
?
A:
[171-229]
-------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
K
-------
M
Y
Y
I
D
S
G
K
---
R
R
V
--
D
E
Y
-----------
D
Y
D
A
S
T
L
-
S
I
S
N
Q
R
P
L
F
----
T
F
E
K
--
H
E
V
---------
P
G
Y
P
D
G
Q
T
I
D
E
E
G
-----
N
L
W
V
A
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------