@TOME V2.3
(Mar 2018)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VSV6: (2017-12-10 )
MALYEIPLLDRNQKFFIKLNKVNYQLKLVYLKRWYLDIYQANAEPIARSIPLVSGIDILSPYSHLINGSMYVQNLNEDESQSFNDLGTNIKLFWQDPE
Atome Classification :
(20 SA)
-----------------------------....----.....10..-......----.20.....--------------.-..-------30...--...---------..---------40........50.----------.......60...-..-..-----.70...-....-.80..--------...----.-..90..-.-.....-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-----------------------------MA
L
Y
----EIPLLD-RN-
Q
K
F
F
I
K
----
L
NKV
N
Y
Q
L
--------------
K
-
L
V
-------
Y
L
K
R
W
--
Y
L
D
---------
I
Y
---------QANA
E
P
I
A
R
SIPL----------VSGIDI
L
S
P
Y
S
H
-LI-NG-----
S
M
Y
V
QN-LNED-ESQ
S
F
--------
N
DL----G-T
N
I
-
K
L
-
F
-
W
QDPE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
55.40
15%
-29
- C3 -
-
4YHC
2
SCAP_SCHPO
A:
[2-468]
GWSD
H
D
E
L
S
TDTT
L
H
E
E
K
F
R
I
E
P
VPVHHQ
L
D
I
L
----
K
I
A
V
-
S
-
E
N
-
Y
K
T
F
A
S
----
V
G
-
L
D
R
S
L
--------------
V
-
V
W
-------
D
L
R
Q
W
--
C
T
K
---------
L
V
---------
L
-
S
K
E
Q
M
P
R
T
L
K
A
----------
I
A
-
L
D
P
Q
G
N
Y
V
S
-
L
F
S
K
D
-----
T
L
F
I
L
N
-
V
E
S
P
-
S
L
M
L
Q
--------
H
S
Y
H
S
KP
N
-
S
K
L
-
N
V
-
F
-
W
M
P
G
T
HKDDE
W
K
N
F
E
L
V
V
V
E
SSG
E
I
Q
V
F
S
L
T
I
E
IE
G
A
D
I
A
LV
E
K
F
Q
L
SSPII
K
S
I
S
I
VSPT
A
N
R
I
A
S
L
T
ESG
E
V
T
V
Y
S
K
K
GP
V
W
S
P
K
I
L
S
Q
NKNYLT
E
T
K
K
DIYGIAMAD
I
L
F
L
A
R
DS
G
V
D
M
I
D
LKNDELL
H
S
F
T
L
P
PIKVNT
F
S
V
G
V
S
N
S
R
F
V
NGQFRVS
S
I
S
F
C
F
T
HAVTE
K
V
L
Y
Y
Y
Y
GNESNESYIILNKWDQQPNLVDVHDPDNS
L
A
S
L
T
FDE
L
Q
E
N
I
H
E
V
E
DASE
S
V
M
S
SDGL
Y
I
F
G
M
R
R
K
S
S
S
G
ISG
E
T
Q
V
W
E
V
W
M
Y
SQSEK
K
H
R
S
K
S
L
K
M
Y
NSLIIADPGPSLAVSDR
C
V
A
I
V
LGN
Y
V
A
L
V
G
Y
GSEIFR
26
Fugue
54.14
27%
7
- C- -
-
1O22
-
?
A:
[6-154]
--------------------------I
L
E
I
L
Y
Y
K
K
GK
E
F
G
I
L
E
-
K
K
M
K
E
I
F
N
E
TG
V
S
L
E
P
V
N
S
E
L
--------------
I
G
R
I
-------
F
L
K
I
S
--
V
L
E
EG
E
E
V
P
S
F
A
I
K
---------
A
L
T
P
K
E
N
A
V
D
L
P
L
G
D
W
T
D
L
K
NVF
V
E
E
I
D
Y
L
D
S
Y
G
D
M
K
I
-
L
S
E
KN
W
Y
K
I
Y
V
P
--
Y
S
S
V
-
K
K
K
N
R
--------
N
E
L
----
V
-
E
E
F
M
K
Y
-
F
-
F
E
S
K
G
WNPGE
Y
T
F
S
V
Q
E
I----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
49.34
36%
-112
* C6 *
-
2GAE
-
MLTA_ECOLI
A:
[292-332]
-------------------------------
L
A
----
E
V
P
L
L
D
-
N
N
-
G
K
F
---------
N
G
Q
Y
E
L
--------------
R
-
L
M
V
A
L
D
VGG
A
I
K
G
Q
--
H
F
D
---------
I
Y
---------
Q
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
48.73
15%
-75
- C1 -
-
1VCB
-
ELOB_HUMAN
A:
[1-98]
-----------------------------
M
D
V
F
-----
L
M
I
R
R
-
H
K
-
T
T
I
F
T
D
----
A
K
E
S
S
-----------------
T
-
V
F
-------
E
L
K
R
I
--
V
E
G
---------
I
L
---------
K
R
P
P
D
E
Q
----
R
L
----------
Y
K
D
D
Q
L
L
D
D
G
K
T
-
L
G
-
E
C
-----
G
F
T
S
Q
T
-
A
R
P
Q
-
A
P
A
T
V
G
L
A
F
R
A
DD
T
F
E
----
A
-
L
C
I
-
E
P
-
F
-
S
S
P
P
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
47.61
36%
-96
- C6 -
-
2AE0
-
MLTA_ECOLI
X:
[272-312]
-------------------------------
L
A
----
E
V
P
L
L
D
-
N
N
-
G
K
F
---------
N
G
Q
Y
E
L
--------------
R
-
L
M
VALDVGG
A
I
K
G
Q
--
H
F
D
---------
I
Y
---------
Q
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
42.98
25%
-67
* C2 *
-
5JI4
-
?
A:
[1-37]
------------------------------------------------------------------------------------------------------------------------------------------------------
A
P
C
E
C
-
D
V
-
N
G
-----
E
T
Y
T
V
S
-
S
S
E
E
-
C
E
R
L
C
--------
R
K
L
----
G
V
T
N
C
-
R
V
-
H
-
C
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
41.82
23%
-307
- C4 -
-
3EIP
-
IMM3_ECOLX
B:
[56-81]
---------------------------------------
P
L
L
Q
-
P
Y
-
F
N
H
Q
I
D
----
I
S
D
N
E
Y
F
V
--------------
S
-
F
D
-------
Y
R
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
40.60
23%
-284
* C4 *
-
1JCH
1
IMM3_ECOLX
B:
[56-81]
---------------------------------------
P
L
L
Q
-
P
Y
-
F
N
H
Q
I
D
----
I
S
D
N
E
Y
F
V
--------------
S
-
F
D
-------
Y
R
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
37.70
10%
-198
- C5 -
-
3IXS
-
RYBP_HUMAN
F:
[9-29]
----------------------------------------
V
D
R
S
T
A
-
Q
Q
L
A
V
T
----
V
G
N
V
T
V
I
I
--------------
T
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
37.56
14%
-3
- C2 -
-
4GYM
1
?
A:
[7-149]
------------------------Q
S
R
L
T
F
V
N
L
----
P
V
A
D
V
A
-
A
S
-
Q
A
F
F
G
T
----
L
G
F
E
F
N
P
K
FTDES
C
A
C
M
V
VSEQ
A
-
F
V
M
------
L
I
D
R
A
--
R
F
A
---------
D
F
T
SKPIADAT
A
T
T
E
A
I
V
C
V
S
A
I
D
----------
R
D
D
V
D
R
F
A
D
T
A
L
-
G
A
-
G
G
-----
T
V
A
R
D
P
M
D
Y
G
F
M
Y
G
R
S
F
--------
H
D
L
D---
G
-
H
L
W
-
E
V
M
W
M
S
A
E
A
V
D
M
A
Q
P
V-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
36.36
28%
-88
- C2 -
-
1XGV
-
?
A:
[337-368]
-------------------------------------------------------------------------------------------------------------------------
A
V
A
E
P
V
H
G
T
A
P
K
----------
Y
A
G
K
D
L
I
N
P
S
A
E
-
I
L
-
S
A
-----
S
L
L
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
35.85
10%
-165
- C5 -
-
3IXS
1
RYBP_HUMAN
H:
[9-29]
----------------------------------------
V
D
R
S
T
A
-
Q
Q
L
A
V
T
----
V
G
N
V
T
V
I
I
--------------
T
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
35.69
29%
-17
- C2 -
-
4YB4
2
HICDH_THET2
A:
[257-293]
----------------------------------------------------------------------------------------------------------------------------
E
P
V
H
G
S
A
P
D
----------
I
A
G
K
G
I
A
N
P
T
A
A
-
I
L
-
S
A
-----
A
M
M
L
D
Y
-
L
G
E
K
-
E
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
35.44
29%
-16
- C2 -
-
3AH3
1
HICDH_THET2
A:
[257-293]
----------------------------------------------------------------------------------------------------------------------------
E
P
V
H
G
S
A
P
D
----------
I
A
G
K
G
I
A
N
P
T
A
A
-
I
L
-
S
A
-----
A
M
M
L
D
Y
-
L
G
E
K
-
E
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
34.83
18%
19
- C2 -
-
1X2I
-
?
A:
[2-69]
-------------------------------------
A
L
T
L
A
E
-
R
Q
-
R
L
I
V
E
G
----
L
P
H
V
S
A
T
L
--------------
A
-
R
R
-------
L
L
K
H
F
GS
V
E
R
---------
V
F
---------
T
A
S
V
A
E
L
M
K
--------------
V
E
G
I
-------------
G
-----
E
K
I
A
K
E
-
I
R
R
V
-
I
T
A
P
Y
--------
I
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
34.67
28%
-95
- C2 -
-
1V94
-
?
A:
[337-368]
-------------------------------------------------------------------------------------------------------------------------
A
V
A
E
P
V
H
G
T
A
P
K
----------
Y
A
G
K
D
L
I
N
P
S
A
E
-
I
L
-
S
A
-----
S
L
L
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
34.04
28%
-74
- C2 -
-
1XKD
1
?
A:
[337-368]
-------------------------------------------------------------------------------------------------------------------------
A
V
A
E
P
V
H
G
T
A
P
K
----------
Y
A
G
K
D
L
I
N
P
S
A
E
-
I
L
-
S
A
-----
S
L
L
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
33.28
29%
0
- C2 -
-
1X0L
-
HICDH_THET2
A:
[257-293]
----------------------------------------------------------------------------------------------------------------------------
E
P
V
H
G
S
A
P
D
----------
I
A
G
K
G
I
A
N
P
T
A
A
-
I
L
-
S
A
-----
A
M
M
L
D
Y
-
L
G
E
K
-
E
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
32.87
32%
-22
- C2 -
-
5HN6
1
?
A:
[247-283]
----------------------------------------------------------------------------------------------------------------------------
E
P
V
H
G
S
A
P
D
----------
I
A
G
K
G
I
A
N
P
I
G
A
-
I
L
-
S
G
-----
A
M
L
L
D
Y
-
L
G
L
D
-
G
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
32.81
29%
-18
- C2 -
-
3ASJ
3
HICDH_THET8
A:
[257-293]
----------------------------------------------------------------------------------------------------------------------------
E
P
V
H
G
S
A
P
D
----------
I
A
G
K
G
I
A
N
P
T
A
A
-
I
L
-
S
A
-----
A
M
M
L
D
Y
-
L
G
E
K
-
E
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------