@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VSY1: (2017-12-10 )
MFYKHTSLLAERITAHGALPNTSYWRGFFFSGVCMTEFQKITHEIRQLQVELNHLGSCNTKGLTTEQIAHLDERFFLAIAKQNKLLARLNNKPEGFL
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10.....--...20........30---------------....-.-...40.....--...50...-..-.--..60---.-------...-....70........-----80........90......--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MFY
K
H
T
S
L
L
A
E
R
I
T
AH--GALPNT
S
Y
W
R
G
F
F
FS---------------
G
V
C
M
-
T
-
E
F
Q
K
I
T
H
E
I
R
--
Q
L
Q
V
E
L
N
H-LG-S--CNTK---G-------L
T
T
-
E
Q
I
A
H
L
D
E
R
F
F
L
A
I
-----AKQ
N
K
L
L
A
R
LNNKPEGFL--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
59.46
27%
20
- C3 -
-
5LNK
-
?
Z:
[3-173]
------------------------------------------------------------------------------------------------------------SWDKDVYPEPPRRTPAPSPQTSLPNPITYLTKAFDLLVDRPVTLVREFIERQHAKNKYYYYHREFRRVPDITECHEKDVLCMFEAEMQWKRDYK
V
D
Q
E
I
V
N
I
I
Q
E
R
L
K
A
C
--
Q
Q
R
E
G
E
S
H
R
Q
N
---------------------
C
A
-
K
-
E
L
Q
Q
F
T
Q
V
V
K
--
A
Y
Q
D
R
Y
H
D
-
L
G
--------------------------
A
H
Y
S
A
R
K
C
L
A
K
-----
Q
K
Q
R
M
L
A
E
R
K
A
T
K
E
A
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
58.49
22%
-74
- C3 -
-
1RTY
-
PDUO_BACSU
B:
[25-95]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
R
V
E
S
Y
--
G
T
I
D
E
L
N
S
F
I
G
L
A
L
A
---------------
E
L
S
G
Q
P
-
G
F
E
D
L
T
A
E
L
L
--
T
I
Q
H
E
L
F
D
-
C
G
-
G
--
D
L
A
I
---
V
TERKDYK
L
T
E
-
E
S
V
S
F
L
E
T
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
58.42
21%
-79
- C3 -
-
2A3D
-
?
A:
[1-73]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
S
W
A
E
F
K
Q
R
L
A
A
I
--
K
T
R
L
Q
A
L
-----------------------
G
G
S
E
-
A
-
E
L
A
A
F
E
K
E
I
A
--
A
F
E
S
E
L
Q
A
-
Y
--------
K
---
G
-------
K
G
N
-
P
E
V
E
A
L
R
K
E
---
A
A
-----
A
I
R
D
E
L
Q
A
Y
R
H
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
Fugue
54.93
16%
8
- C3 -
-
2NAS
-
?
A:
[1-110]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
P
S
F
A
P
G
T
L
V
W
L
K
Q
------
D
R
F
P
W
W
P
G
F
V
M
D
PDEVRD
I
T
L
P
E
GSD
V
W
V
C
C
-
L
-
P
R
D
S
L
T
L
S
A
A
N
S
E
D
E
G
Q
I
R
Y
-
F
L
-
P
--
D
R
D
E
---
G
-------
M
M
E
-
E
--
G
K
L
D
A
S
C
A
V
A
I
-----
E
E
A
I
Q
L
Y
E
E
Q
L
K
A
Q
A
G
G
T
NE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
54.38
20%
-63
- C3 -
-
1WVT
-
?
A:
[25-86]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
I
V
K
A
L
--
G
D
L
D
E
L
N
S
V
L
G
V
V
S
S
---------------
L
Y
-------
P
E
L
S
E
V
I
Q
--
K
L
Q
N
D
I
F
S
-
I
S
-
S
--
E
I
A
G
FDM
N
-------
F
S
D
-
E
K
V
K
G
I
E
E
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
54.17
12%
-52
* C3 *
-
1ZHC
-
?
A:
[1-76]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
F
H
E
F
R
D
E
I
S
V
L
K
A
N
N
-------------------------------------
P
-
H
F
D
K
I
F
E
K
H
N
--
Q
L
D
D
D
I
K
T
-
A
E
-
Q
-----
Q
---
N
-------
A
S
D
-
A
E
V
S
H
M
K
K
Q
K
L
K
L
K
-----
D
E
I
H
S
M
I
I
E
Y
R
E
K
Q
K
S
E
R
A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
53.73
25%
-5
- C2 -
-
4NXT
1
MID51_HUMAN
A:
[9-345]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------D
L
K
K
S
R
L
R
M
S
L
Q
E
K
L
L
T
Y
Y
R
N
RAAIP
A
G
E
Q
A
R
A
K
Q
A
A
V
D
I
C
A
E
L
R
S
F
L
R
A
K
--------
L
P
D
M
P
L
-
R
D
M
Y
L
S
---------------
G
S
L
Y
-
D
-
D
L
Q
V
V
T
A
D
H
I
--
Q
L
I
V
P
L
V
--------------------------------
L
E
Q
N
L
W
S
C
I
-----
P
G
E
D
T
I
M
-----
N
V
P
G
F
F
L
V
R
R
E
NPEYFPRGSSYWDRCVVGGYLS
P
K
T
V
A
D
T
F
E
K
V
V
A
G
S
IN
W
P
A
I
G
S
L
L
DYV
I
R
P
A
P
PPEAL
T
L
E
V
QYERD
K
H
L
F
I
D
F
L
P
S
V
T
L
GD
T
V
L
V
AKPHRLAQYDN
L
W
R
L
SL
R
P
A
E
T
A
R
L
R
A
L
D
Q
A
D
SGC
R
S
L
C
L
K
I
L
K
A
I
C
K
S
T
P
ALGHLT
A
S
Q
L
T
N
V
I
L
H
L
A
Q
E
E
ADWSPDM
L
A
D
R
F
L
Q
A
L
R
G
L
I
S
Y
L
E
A
GVLPSALNPKVNLFAELT
P
E
E
I
D
E
L
G
Y
T
L
Y
C
S
LSEPEVLL
27
Fugue
50.96
21%
34
- C3 -
-
4FHE
3
?
A:
[29-368]
KPFVPK
L
V
Y
F
E
P
E
A
L
S
Y
P
L
G
K
E
L
Y
E
K
F
T
Q
M
G
I
K
I
R
E
T
TSHNQVRGIPGET
E
L
A
R
Y
R
N
A
K
S
T
L
V
V
G
V
R
RTLKFDSSKPSAE
Y
A
I
P
L
A
T
G
C
MGHCHYCYLQTTLGSKP
Y
I
R
V
Y
VN
L
D
D
I
F
A
Q
A
Q
K
Y
I
N
E
R
AP
E
I
T
R
F
E
AAATSDIVGIDHLTH
S
L
K
K
A
I
E
F
I
G
A
TDY
G
R
L
R
F
V
T
KYEHVDHLLDARHNGK
T
R
F
R
F
S
I
N
S
R
Y
V
I
N
H
F
E
P
G
T
S
S
F
D
G
R
L
A
A
A
--
R
K
V
A
G
A
G
Y
K
L
G
F
V
V
A
---------------
P
I
Y
R
----
H
E
G
W
E
R
G
Y
F
--
E
L
F
Q
E
L
A
R
Q
L
E
-
G
--
M
D
L
S
---
D
-------
L
T
F
-
E
L
I
Q
H
R
F
T
K
P
A
K
R
V
-----
I
E
Q
R
Y
P
K
T
R
L
D
L
D
E
T
K
R
K
Y
K
W
G
R
Y
G
I
G
K
Y
V
Y
R
D
E
E
A
K
E
L
E
D
T
M
R
R
Y
I
E
Q
FFPGAYVQYFT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
49.20
50%
-162
- C4 -
-
4BXU
-
PEX14_HUMAN
A:
[44-55]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
K
---
G
-------
L
T
D
-
E
E
I
D
M
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
47.30
21%
-186
- C3 -
-
2C0S
-
?
A:
[3-36]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
T
K
L
N
D
R
I
E
--
A
K
K
K
E
L
I
Y
-
L
V
-
E
--
K
--
Y
---
G
-------
F
T
H
-
H
K
V
I
S
F
S
Q
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
46.11
13%
-36
- C3 -
-
5IE9
-
?
A:
[1-103]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
A
K
T
M
K
D
M
Q
K
E
V
D
A
Y
--
I
G
Q
F
K
E
G
Y
F
S
----------------------
P
L
-
A
-
M
M
A
R
L
T
E
E
M
G
--
E
L
A
R
E
V
N
H
-
Y
Y
-
G
--
E
R
S
I
---
E
-------
E
E
L
-
G
D
V
L
F
V
M
I
C
M
A
N
S
L
NID
L
E
T
A
H
N
I
V
M
N
K
F
N
T
R
D
K
D
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
46.07
20%
0
- C- -
-
5IM6
-
?
S:
[5--74]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
R
I
A
A
I
--
G
D
V
D
E
L
N
S
Q
I
G
V
L
L
A
---------------
E
P
L
-----
P
D
D
V
R
A
A
L
S
--
A
I
Q
H
D
L
F
D
-
L
G
-
G
EL
C
I
P
G
HA-
A
-------
I
T
E
-
D
H
L
L
R
L
A
L
W
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
45.04
50%
-87
- C4 -
-
3FF5
-
PEX14_RAT
B:
[39-50]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
K
---
G
-------
L
T
D
-
E
E
I
D
L
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
43.69
19%
44
- C1 -
-
2GRG
-
YN034_YEAST
A:
[1-98]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
S
S
I
P
I
T
E
V
L
P
R
AV
G
S
L
T
F
D
E
N
Y
N
L
L
D
T
S
---------------
G
V
A
K
-
V
I
E
K
S
P
I
A
E
I
I
R
--
K
S
N
A
E
L
G
R
-
L
G
Y
S
--
V
Y
E
D
---
A
-------
Q
Y
I
-
G
H
A
F
K
K
A
G
H
F
I
V
Y
F
-----
T
P
K
N
K
N
R
E
G
V
V
P
P
V
G
I
T
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
43.47
42%
-109
- C4 -
-
5AON
-
?
B:
[37-48]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
K
---
G
-------
L
S
A
-
E
E
I
C
E
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
41.55
24%
-114
- C3 -
-
3KWO
-
DPS_CAMJE
D:
[52-72]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
F
D
S
C
A
E
R
V
L
Q
L
--
G
E
K
A
I
T
C
Q
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
40.60
24%
-99
- C3 -
-
3KWO
1
DPS_CAMJE
A:
[52-72]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
F
D
S
C
A
E
R
V
L
Q
L
--
G
E
K
A
I
T
C
Q
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
38.91
11%
37
- C3 -
-
2RT6
-
PRIC_ECOLI
A:
[1-98]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
K
T
A
L
L
L
E
K
L
E
G
Q
L
A
T
L
R
Q
R
C
--
A
P
V
S
Q
F
A
T
L
S
A
R
F
D
R
---------------
H
L
F
Q
-
T
-
R
A
T
T
L
Q
A
C
L
D
--
E
A
G
D
N
L
A
A
-
L
R
-
H
--
A
V
E
Q
---
Q
--------
Q
L
-
P
Q
V
A
W
L
A
E
H
L
A
A
Q
L
-----
E
A
I
A
R
E
A
S
A
W
S
L
R
E
W
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
38.86
14%
-
- C3 -
-
3KDQ
-
?
C:
[6-63]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
L
-
A
-
Q
R
V
E
A
Q
R
R
Y
S
--
E
L
N
Q
L
L
L
D
-
V
A
-
K
--
V
-
Q
E
---
G
-------
D
Q
P
A
E
N
P
H
E
I
L
T
E
L
E
E
L
T
-----
T
R
I
N
D
L
V
R
R
I
N
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
38.31
14%
-
- C3 -
-
3KDQ
-
?
B:
[6-63]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
L
-
A
-
Q
R
V
E
A
Q
R
R
Y
S
--
E
L
N
Q
L
L
L
D
-
V
A
-
K
--
V
-
Q
E
---
G
-------
D
Q
P
A
E
N
P
H
E
I
L
T
E
L
E
E
L
T
-----
T
R
I
N
D
L
V
R
R
I
N
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------