@TOME V2.3
(Mar 2018)
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VSZ6: (2017-12-11 )
MIATFNKSKTALTINRQEFKLALGKIDAGIEKQIVSLKKAKQSYNAAEMAREVISEANIFEAIIEGFNEAEGTNLKLADITNLEVAQGWIDDFLEKYSEV
Atome Classification :
(20 SA)
--------------------------------------------------------.........10........20........30........40........50--........60......---..70-.......-----..80.----.......90........100----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
--------------------------------------------------------MIATFNKS
K
T
A
L
T
I
N
R
Q
E
F
K
L
A
LGKIDA
G
I
E
K
Q
I
V
S
L
K
K
A
K
QSY
N
A
A
E
M
A
R
--
E
V
I
S
E
A
N
I
F
E
A
I
I
E
G
F---NEA--EGT
N
L
K
L
-----
A
DIT
N
----
L
E
V
A
Q
G
W
I
D
D
F
L
E
K
YSEV------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
51
Fugue
53.87
16%
-27
- C4 -
-
1XHB
1
GALT1_MOUSE
A:
[8-466]
N
R
S
L
P
DVRL
E
G
C
K
T
K
V
Y
P
D
NL
P
T
T
S
V
V
I
V
F
H
NEA
W
S
T
L
L
R
T
V
H
S
V
I
N
R
SPRHMIE
E
I
V
L
V
D
D
A
S
------
E
R
D
F
L
K
R
P
L
E
S
Y
V
K
K
L
K
V
P
V
H
V
I
R
M
E
Q
R
S
----------------
G
L
I
R
A
R
L
K
G
A
---
A
V
S
--
R
G
Q
V
I
T
F
-----
L
D
-
A
H
----
C
E
C
T
A
G
W
L
E
P
L
L
A
R
I
K
H
D
RR
T
V
V
C
P
I
I
D
V
I
S
DDTF
E
Y
M
A
G
S
DM
T
Y
G
G
F
N
WKL
N
F
R
W
Y
P
VP
Q
R
E
M
D
R
R
KGDRTLPVRTPTMAGG
L
F
S
I
D
R
D
Y
F
Q
E
I
GTYDAGMDIWGGENL
E
I
S
F
R
I
W
Q
C
G
G
T
L
E
IVTC
S
H
V
G
H
V
FG
Q
I
I
N
K
N
N
R
R
L
A
E
V
WMDEF
K
N
F
F
Y
I
I
S
PGVTKVDYGDI
S
S
R
L
G
L
R
R
K
L
QCKP
F
S
W
Y
L
E
N
IYPDSQIPRHYFSLGEIRNVETN
Q
C
L
D
NMARKEN
E
K
V
G
I
F
NCHGMGGNQVFSYTANKEIRTDD
L
C
L
D
V
S
K
LN
G
P
V
T
M
L
KCHHLKGNQ
L
W
E
Y
D
PVKLTLQHVNSN
Q
C
L
D
K
A
TEEDSQ
V
P
S
I
R
DCTGSRSQQWLLRNV
45
PsiBlast_CBE
53.29
31%
-24
- C4 -
-
4L0M
1
?
A:
[43-116]
-------------------------------------------------------------
N
K
E
E
I
V
L
N
D
Y
L
E
N
K
K
I
Y
K
G
K
I
---
L
G
K
D
V
I
S
L
T
T
G
I
G
K
V
N
A
A
T
W
S
S
--
Q
I
I
S
K
Y
K
I
T
H
I
I
N
S
G
S
---
S
G
G
I
K
E
N
S
N
L
K
I
-----
L
D
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
52.42
35%
-26
- C4 -
-
3QI3
1
PDE9A_HUMAN
A:
[362-424]
-----------------------------------------------------------------------------------------------------
A
T
D
M
A
R
--
H
A
-
E
I
M
D
S
F
K
E
K
M
E
N
F
DYS
N
E
E
--
H
M
T
L
L
K
M
I
L
I
K
C
C
D
I
S
N
EVRP
M
E
V
A
E
P
W
V
D
C
L
L
E
E
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
52.06
35%
-17
- C4 -
-
3QI4
1
PDE9A_HUMAN
A:
[362-424]
-----------------------------------------------------------------------------------------------------
A
T
D
M
A
R
--
H
A
-
E
I
M
D
S
F
K
E
K
M
E
N
F
DYS
N
E
E
--
H
M
T
L
L
K
M
I
L
I
K
C
C
D
I
S
N
EVRP
M
E
V
A
E
P
W
V
D
C
L
L
E
E
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
PsiBlast_CBE
51.94
35%
-8
- C4 -
-
3QI3
1
PDE9A_HUMAN
B:
[362-424]
-----------------------------------------------------------------------------------------------------
A
T
D
M
A
R
--
H
A
-
E
I
M
D
S
F
K
E
K
M
E
N
F
DYS
N
E
E
--
H
M
T
L
L
K
M
ILIKC
C
D
I
S
N
EVRP
M
E
V
A
E
P
W
V
D
C
L
L
E
E
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
51.56
35%
-15
- C4 -
-
4Y86
1
PDE9A_HUMAN
A:
[362-424]
-----------------------------------------------------------------------------------------------------
A
T
D
M
A
R
--
H
A
-
E
I
M
D
S
F
K
E
K
M
E
N
F
DYS
N
E
E
--
H
M
T
L
L
K
M
I
L
I
K
C
C
D
I
S
N
EVRP
M
E
V
A
E
P
W
V
D
C
L
L
E
E
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
43
PsiBlast_CBE
50.76
35%
-14
- C4 -
-
4Y86
1
PDE9A_HUMAN
B:
[362-424]
-----------------------------------------------------------------------------------------------------
A
T
D
M
A
R
--
H
A
-
E
I
M
D
S
F
K
E
K
M
E
N
F
DYS
N
E
E
--
H
M
T
L
L
K
M
I
L
I
K
C
C
D
I
S
N
EVRP
M
E
V
A
E
P
W
V
D
C
L
L
E
E
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
50.71
36%
113
- C4 -
-
2HD1
1
PDE9A_HUMAN
A:
[182-244]
-----------------------------------------------------------------------------------------------------
A
T
D
M
A
R
H
A
E
I
M
D
S
---
F
K
E
K
M
E
N
F
DYS
N
E
E
--
H
M
T
L
L
K
M
I
L
I
K
C
C
D
I
S
N
EVRP
M
E
V
A
E
P
W
V
D
C
L
L
E
E
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
PsiBlast_CBE
50.64
36%
122
- C4 -
-
2HD1
1
PDE9A_HUMAN
B:
[182-244]
-----------------------------------------------------------------------------------------------------
A
T
D
M
A
R
HA
E
I
M
D
S
---
F
K
E
K
M
E
N
F
DYS
N
E
E
--
H
M
T
L
L
K
M
ILIKC
C
D
I
S
N
EVRP
M
E
V
A
E
P
W
V
D
C
L
L
E
E
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
39
PsiBlast_CBE
50.52
35%
3
- C4 -
-
4Y8C
1
PDE9A_HUMAN
B:
[362-424]
-----------------------------------------------------------------------------------------------------
A
T
D
M
A
R
--
H
A
-
E
I
M
D
S
F
K
E
K
M
E
N
F
DYS
N
E
E
--
H
M
T
L
L
K
M
I
L
I
K
C
C
D
I
S
N
EVRP
M
E
V
A
E
P
W
V
D
C
L
L
E
E
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
PsiBlast_CBE
50.52
36%
120
- C4 -
-
3DYS
2
PDE9A_HUMAN
B:
[185-247]
-----------------------------------------------------------------------------------------------------
A
T
D
M
A
R
H
A
E
I
M
D
S
---
F
K
E
K
M
E
N
F
DYS
N
E
E
--
H
M
T
L
L
K
M
I
L
I
K
C
C
D
I
S
N
EVRP
M
E
V
A
E
P
W
V
D
C
L
L
E
E
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
PsiBlast_CBE
50.35
36%
125
- C4 -
-
3K3E
1
PDE9A_HUMAN
B:
[182-244]
-----------------------------------------------------------------------------------------------------
A
T
D
M
A
R
HA
E
I
M
D
S
---
F
K
E
K
M
E
N
F
DYS
N
E
E
--
H
M
T
L
L
K
M
ILIKC
C
D
I
S
N
EVRP
M
E
V
A
E
P
W
V
D
C
L
L
E
E
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
PsiBlast_CBE
50.31
35%
-22
- C4 -
-
3QI4
1
PDE9A_HUMAN
B:
[362-424]
-----------------------------------------------------------------------------------------------------
A
T
D
M
A
R
--
H
A
-
E
I
M
D
S
F
K
E
K
M
E
N
F
DYS
N
E
E
--
H
M
T
L
L
K
M
ILIKC
C
D
I
S
N
EVRP
M
E
V
A
E
P
W
V
D
C
L
L
E
E
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
PsiBlast_CBE
50.27
36%
127
* C4 *
-
3DYL
2
PDE9A_HUMAN
B:
[185-247]
-----------------------------------------------------------------------------------------------------
A
T
D
M
A
R
HA
E
I
M
D
S
---
F
K
E
K
M
E
N
F
DYS
N
E
E
--
H
M
T
L
L
K
M
ILIKC
C
D
I
S
N
EVRP
M
E
V
A
E
P
W
V
D
C
L
L
E
E
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
50.24
36%
120
- C4 -
-
3DYL
1
PDE9A_HUMAN
A:
[185-247]
-----------------------------------------------------------------------------------------------------
A
T
D
M
A
R
H
A
E
I
M
D
S
---
F
K
E
K
M
E
N
F
DYS
N
E
E
--
H
M
T
L
L
K
M
I
L
I
K
C
C
D
I
S
N
EVRP
M
E
V
A
E
P
W
V
D
C
L
L
E
E
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
60
HHSearch
50.16
24%
-262
- C4 -
-
3O2R
-
RNC_CAMJE
A:
[135-167]
-----------------------------------------------------------------------------------------------------------------
L
S
D
A
L
E
A
I
I
G
A
I
---
H
L
E
--
A
---------------
G
----
F
E
F
A
K
T
I
A
L
R
L
I
E
K
N
F
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
50.10
36%
125
- C4 -
-
4E90
1
PDE9A_HUMAN
A:
[185-247]
-----------------------------------------------------------------------------------------------------
A
T
D
M
A
R
H
A
E
I
M
D
S
---
F
K
E
K
M
E
N
F
DYS
N
E
E
--
H
M
T
L
L
K
M
I
L
I
K
C
C
D
I
S
N
EVRP
M
E
V
A
E
P
W
V
D
C
L
L
E
E
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
50.06
35%
-14
- C4 -
-
4QGE
1
PDE9A_PANTR
A:
[362-424]
-----------------------------------------------------------------------------------------------------
A
T
D
M
A
R
--
H
A
-
E
I
M
D
S
F
K
E
K
M
E
N
F
DYS
N
E
E
--
H
M
T
L
L
K
M
I
L
I
K
C
C
D
I
S
N
EVRP
M
E
V
A
E
P
W
V
D
C
L
L
E
E
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
PsiBlast_CBE
50.03
36%
126
- C4 -
-
4G2J
1
PDE9A_HUMAN
B:
[185-247]
-----------------------------------------------------------------------------------------------------
A
T
D
M
A
R
HA
E
I
M
D
S
---
F
K
E
K
M
E
N
F
DYS
N
E
E
--
H
M
T
L
L
K
M
ILIKC
C
D
I
S
N
EVRP
M
E
V
A
E
P
W
V
D
C
L
L
E
E
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
49.97
36%
115
- C4 -
-
3N3Z
1
PDE9A_HUMAN
A:
[182-244]
-----------------------------------------------------------------------------------------------------
A
T
D
M
A
R
H
A
E
I
M
D
S
---
F
K
E
K
M
E
N
F
DYS
N
E
E
--
H
M
T
L
L
K
M
I
L
I
K
C
C
D
I
S
N
AVRP
M
E
V
A
E
P
W
V
D
C
L
L
E
E
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------