@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VTA9: (2017-12-12 )
MSITLNGHQLKSLLDFVNPDGTNDLDQLDTELTIAFFEDGHSGKGYYFWMTEYPEEGAMKLDHLSGAANE
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10..-------......20.----.......30-.-....-----------...40........50........60........70--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
I
T
L
N
G
H
Q
L
K
S
L
-------
L
D
F
VNPDGT----N
D
L
D
Q
LDT
E
-
L
-
T
I
A
F
-----------
F
EDGHSG
K
G
Y
Y
F
W
MTEYPEEGAM
K
L
D
HLSGAANE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
55.14
24%
88
- C4 -
-
5IJL
-
DP2L_PYRAB
A:
[9-1044]
P
K
E
M
E
E
Y
F
E
M
L
Q
R
E
I
D
K
A
Y
E
I
A
K
K
A
R
A
Q
GKDPSLDVE
I
P
Q
A
TD
M
A
G
R
V
E
S
L
VGPPG
V
A
K
R
I
R
E
L
V
K
E
YG
K
E
I
A
A
L
K
I
V
D
E
I
I
E
GKFGDLGS
R
E
K
Y
A
E
Q
A
V
R
T
A
L
A
I
L
T
EGIVSAPIEGIA
N
V
K
I
K
R
NTWADN
S
E
Y
L
A
L
Y
Y
A
GPIRSSG
G
T
A
Q
A
L
S
V
L
V
G
D
Y
V
R
R
K
L
GLD
R
F
K
P
S
E
K
H
I
E
R
M
V
E
E
V
D
L
Y
H
R
AVTRLQ
Y
H
P
S
P
E
E
V
R
L
A
M
R
N
IPIEITGEATDDVEVSHRDVPGVETNQLR
G
G
A
I
L
V
L
AEGVLQK
A
K
K
L
V
K
Y
I
D
K
M
GIEGW
E
W
L
K
E
F
V
E
A
K
E
K
GVDMG
F
Y
Y
S
L
Y
Q
K
F
K
E
EPLFSDPSKPGGFR
L
R
Y
G
RSWGIN
P
A
T
M
I
L
VG
A
V
V
T
P
V
TT
I
E
G
P
I
V
K
L
KDG
S
V
L
R
V
DD
Y
N
L
A
L
K
V
R
EDVEEILYL
G
D
A
V
I
A
FGDQTLLPANYC
E
E
W
W
I
L
E
F
V
K
A
L
K
E
I
YE
V
H
L
E
P
F
T
E
N
E
E
E
S
I
E
E
A
S
D
Y
L
EID
P
E
F
L
K
E
M
L
R
DPLRVKPP
V
E
L
A
I
H
F
S
E
V
LGIPLHPYYTLYWNSVE
P
K
D
V
E
K
L
W
R
L
L
K
N
Y
A
E
I
E
W
S
N
F
RG
I
K
F
A
K
K
I
V
I
S
QEKLGDS
K
R
T
L
E
L
L
G
L
P
H
T
V
R
DG
N
V
I
V
D
Y
P
W
A
A
A
L
LTPLGNLN
W
E
F
M
A
K
P
LYA
T
I
D
I
I
N
E
NNE
I
K
L
R
DRGISWIGKPPVQVL
F
P
I
G
L
A
G
G
S
S
R
D
I
-------
K
K
A
A
E
E
G
K
V
-----------
A
E
-
V
-
E
I
A
F
-----------
F
K
C
--------------
P
K
C
G
H
V
G
P
E
H
L
C
P
N
C
G
T
R
K
E
L
L
W
V
C
PRCN
A
E
Y
P
E
S
Q
A
E
G
Y
NYTCPKCN
V
K
L
R
PYAK
R
K
I
R
P
S
E
L
L
N
R
A
M
E
N
V
KVYGVD
K
L
K
G
V
MGMTSGWKMPEP
L
E
K
G
L
L
R
A
K
N
D
V
Y
V
F
KDG
T
I
R
F
D
A
T
D
A
P
I
THFRPREIGVS
V
E
K
L
R
E
L
GYTHDFEGKPLVSED
Q
I
V
E
L
K
PQ
D
I
I
L
S
K
E
A
G
R
Y
L
L
K
V
A
K
F
V
D
D
L
L
E
KFYG
L
P
R
F
YNAEKMEDLIG
H
L
V
I
G
L
A
P
HTS
A
G
I
V
G
R
I
IGFVDAL
V
G
Y
A
H
PYFHA
A
K
R
R
N
C
DGD
E
D
A
V
M
L
L
L
D
A
L
L
NFSRYYLPEKRGGKMDAPL
V
I
T
TRLDPRYYP
L
E
F
Y
E
A
T
Y
E
LKS
P
K
E
L
V
G
V
I
E
R
V
E
D
1
PsiBlast_PDB
52.32
44%
155
- C2 -
-
4HET
-
?
A:
[49-86]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
Q
K
-------
L
E
F
V
I
P
E
G
A
T
I
K
I
N
D
Q
V
A
G
D
T
E
-
A
-
T
Y
D
F
-----------
S
E
E
T
H
S
R
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
47.06
35%
-164
- C- -
-
1G39
-
HNF1A_MOUSE
A:
[1-28]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
----
S
K
L
S
Q
L
Q
T
E
-
L
-
L
A
A
L
-----------
L
E
S
G
L
S
K
E
A
L
I
Q
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
46.02
34%
-160
- C- -
-
1G39
-
HNF1A_MOUSE
C:
[1-29]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
----
S
K
L
S
Q
L
Q
T
E
-
L
-
L
A
A
L
-----------
L
E
S
G
L
S
K
E
A
L
I
Q
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
45.58
18%
-205
- C4 -
-
1HP1
-
USHA_ECOLI
A:
[401-417]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
A
D
M
T
G
K
E
V
I
D
Y
-------
L
T
A
V
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
45.56
35%
-82
- C4 -
-
1G2Z
-
HNF1A_MOUSE
A:
[1-32]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
----
S
K
L
S
Q
L
Q
T
E
-
L
M
A
-
A
L
-----------
L
E
S
G
L
S
K
E
A
L
I
Q
A
L
G
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
44.65
38%
-195
- C4 -
-
1F93
-
HNF1A_MOUSE
H:
[5-30]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
S
Q
L
Q
T
E
-
L
-
L
A
A
L
-----------
L
E
S
G
L
S
K
E
A
L
I
Q
A
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
44.34
12%
49
- C3 -
-
1YWX
-
RS24_METMP
A:
[1-102]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
D
I
S
I
I
S
D
R
N
N
P
L
LQ
R
R
E
I
K
F
T
V
S
F
D
A
A
T
----
P
S
I
K
D
V
K
M
K
-
L
-
V
A
V
L
NANKQVLVVD
T
L
D
Q
I
F
G
K
L
E
A
E
G
Y
A
K
I
Y
N
D
E
K
A
M
A
T
I
E
T
K
S
V
L
E
K
NKI
E
E
E
A
EAEVAEE-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
43.05
18%
-203
- C4 -
-
1HPU
-
USHA_ECOLI
B:
[410-426]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
A
D
M
T
G
K
E
V
I
D
Y
-------
L
T
A
V
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
42.90
36%
-108
* C4 *
-
1G2Z
-
HNF1A_MOUSE
B:
[2-32]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
----
S
K
L
S
Q
L
Q
T
E
-
L
M
A
-
A
L
-----------
L
E
S
G
L
S
K
E
A
L
I
Q
A
L
G
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
41.17
18%
-277
- C4 -
-
3ZTV
-
5NTD_HAEIN
A:
[438-455]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
Y
K
M
E
G
S
L
V
K
Q
V
-------
L
E
D
A
M
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
40.64
35%
-167
- C4 -
-
3IVD
-
?
A:
[382-398]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
M
E
L
T
G
K
Q
L
R
S
L
-------
M
E
H
G
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
40.58
33%
-164
- C- -
-
1G39
-
HNF1A_MOUSE
D:
[2-31]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
----
S
K
L
S
Q
L
Q
T
E
-
L
-
L
A
A
L
-----------
L
E
S
G
L
S
K
E
A
L
I
Q
A
L
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
38.96
33%
-135
- C- -
-
1G39
-
HNF1A_MOUSE
B:
[2-31]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
----
S
K
L
S
Q
L
Q
T
E
-
L
-
L
A
A
L
-----------
L
E
S
G
L
S
K
E
A
L
I
Q
A
L
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
38.75
35%
-43
- C4 -
-
1G2Y
-
HNF1A_MOUSE
C:
[2-30]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
----
S
K
L
S
Q
L
Q
T
E
M
L
--
A
A
L
-----------
L
E
S
G
L
S
K
E
A
L
I
Q
A
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
38.48
35%
-127
- C4 -
-
3IVE
-
?
A:
[382-398]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
M
E
L
T
G
K
Q
L
R
S
L
-------
M
E
H
G
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
33.86
12%
-209
- C4 -
-
2GA1
-
?
A:
[76-92]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
T
A
E
D
L
S
A
A
-------
W
H
Y
Y
E
Q
N
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
32.78
24%
-139
- C4 -
-
4H2I
-
5NTD_HUMAN
A:
[398-414]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
Q
L
K
G
S
T
L
K
K
A
-------
F
E
H
S
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
30.83
18%
-74
- C4 -
-
4Q7F
-
?
A:
[392-408]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
A
V
S
G
A
K
L
K
E
A
-------
I
E
R
S
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
30.78
33%
-135
- C1 -
-
5E9P
-
?
A:
[3-23]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
-
Y
-
T
E
I
A
-----------
L
P
F
S
Y
D
G
A
G
E
Y
Y
W
K
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------