@TOME V2.3
(Mar 2018)
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VTV3: (2017-12-15 )
MADVDVKIEGLDEVLRKMGVLKDKRKIRNAAMRAARKGMNVVRDAARQNAKAIDDPETSEKIWRNISVSAGKTKSLDLVQMRVGVRGGASYSNPTPPNTSGGDTRYWRFLEYGTSEMPATPFMRPALANNIQKVTDTFSQSFSTELDKEIAKL
Atome Classification :
(18 SA)
---------------------------------------------------.........10-...-......20........30.........40---------..----.......50........60...------.....70........80......-----..90........100.......110.......120.......130----........140.......150.-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
---------------------------------------------------MAD
V
D
V
K
I
E
G
--
L
D
E
-
V
L
R
KMGV
L
K
D
K
R
K
I
R
N
A
-
A
M
R
A
A
R
K
G
M
N
----------
V
V
----
R
D
A
A
RQNAKAIDDP
E
T
S
E
K
I
W
R
------
N
ISVSAGKTKS
L
D
L
V
Q
M
R
V
GVRG-----GASYSNPTPPNTSGGDT
R
Y
W
R
F
L
EYGTSEMPATPFM
R
P
A
L
A
N
N
I
-----
Q
K
V
T
D
T
F
S
Q
S
F
S
T
E
L
D
K
E
I
AKL-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
58.98
15%
62
- C5 -
-
1GMN
2
HGF_HUMAN
A:
[11-180]
----------------------------------------------------
T
I
H
E
F
K
K
S
A
--
K
T
T
-
L
I
K
I
D
P
A
L
K
I
K
T
K
K
V
N
T
-
A
D
Q
C
A
D
R
C
T
R
NKGLPFTCK
A
F
V
----
F
D
K
A
R
K
Q
C
L
W
F
P
F
N
S
M
S
S
G
V
K
K
------
E
F
G
H
E
F
D
L
Y
E
N
K
D
Y
I
R
N
C
I
I
-
G
K
-----
G
R
S
Y
K
G
T
V
S
I
T
K
S
G
I
K
C
Q
P
W
S
S
M
I
P
H
E
H
S
F
L
P
S
S
Y
R
G
K
D
L
Q
E
N
Y
CRNPR
G
E
E
G
G
P
W
C
F
T
S
N
P
E
V
R
Y
E
V
C
D
I
P
Q
CS-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
57.38
16%
-69
- C3 -
-
4NSS
-
?
A:
[29-148]
---------------------------------------------------
P
A
K
T
L
E
A
V
S
A
--
V
A
D
-
W
L
R
D
P
Q
R
E
S
P
A
R
A
Q
L
A
E
-
A
V
R
L
T
A
R
T
L
A
----------
A
V
----
A
P
G
------------------
A
------
S
V
E
V
R
V
P
P
F
V
A
V
Q
C
I
S
-----------------
G
G
T
P
P
N
V
V
E
T
D
A
R
T
W
L
L
L
A
T
G
L
L
D
I
A
D
--------
A
G
A
S
-----
V
Q
M
S
G
S
R
A
A
E
V
A
H
W
L
P
V
V
R
I
D
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
57.02
16%
66
* C5 *
-
1GP9
1
HGF_HUMAN
A:
[6-175]
-----------------------------------------------------
V
H
E
F
K
K
S
A
--
K
T
T
-
L
I
K
I
D
P
A
L
K
I
K
T
K
K
V
N
T
-
A
D
Q
C
A
N
R
C
T
R
----------------
N
K
G
L
P
F
T
C
K
A
F
V
F
D
K
A
R
K
Q
C
L
W
F
PFNSM
S
S
G
V
K
K
E
F
G
H
E
F
D
L
Y
E
N
K
D
Y
I
R
N
CIIGK
G
R
S
Y
K
G
T
V
S
I
T
K
S
G
I
K
C
Q
P
W
S
S
M
I
P
H
E
H
S
F
L
P
S
S
Y
R
G
K
D
L
Q
E
N
Y
CRNPR
G
E
E
G
G
P
W
C
F
T
S
N
P
E
V
R
Y
E
V
C
D
I
P
Q
CSE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
50.38
15%
55
* C4 *
-
2KPO
-
?
A:
[1-110]
-----------------------------------------------------------------
M
-
L
L
Y
V
L
I
I
S
N
D
K
K
L
I
E
E
A
-
R
K
M
A
E
K
A
N
L
E
----------
L
R
T
V
KT
E
D
E
L
K
K
Y
L
E
E
F
R
K
E
S
Q
N
I
K
V
L
I
------
L
V
S
N
D
E
E
L
D
K
A
K
E
L
A
Q
K
M
----------
E
I
D
V
R
T
R
K
V
T
S
P
D
E
A
K
R
W
I
K
E
F
S
E
E
G
G
S
L
E
H
H
H
H
H
H
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
50.18
17%
89
- C4 -
-
5F4H
5
?
A:
[1-437]
M
N
D
L
M
L
D
K
S
A
L
L
F
G
V
S
K
Y
L
E
K
GIIT
G
N
V
L
I
H
K
S
L
L
A
E
L
E
R
E
S
N
D
GLVS
A
E
I
A
L
D
E
V
K
K
L
K
D
--
I
T
E
R
I
L
V
N
F
E
I
V
G
D
D
S
K
K
G
E
A
-
N
E
L
S
R
E
Y
C
L
E
K
G
C
-------
I
I
----
V
T
A
D
E
T
Q
K
K
I
C
D
A
M
G
I
Q
Y
N
F
L
Q
------
P
L
K
Q
G
L
S
F
E
S
F
F
D
D
E
T
M
S
L
H
I
K
E
-----
D
------
T
V
P
R
A
K
K
G
K
P
G
N
W
K
F
V
N
L
S
D
K
P
M
L
S
T
D
V
R
--
M
I
A
N
E
I
-----
I
N
A
V
R
L
I
K
G
S
F
V
E
I
E
R
R
--
G
S
L
I
I
Q
L
GN
Y
R
V
V
I
T
R
P
PLSD
G
W
E
I
T
I
T
R
P
V
VRKRLEDYNLD
E
R
L
I
K
R
L
E
ERAE
G
I
I
I
A
G
A
PGMG
A
T
T
F
A
Q
A
L
A
E
Y
Y
M
R
L
G
K
I
V
K
T
I
E
SPRD
M
H
L
P
PE
I
T
Q
Y
S
KNYAEIG
E
L
H
D
I
L
L
L
S
RPD
Y
T
V
Y
D
EMRN
D
E
D
F
K
L
Y
V
D
L
R
L
A
G
V
G
M
V
G
V
V
HATS
P
I
D
A
I
H
R
F
V
N
R
VDIGT
I
P
N
I
L
D
T
I
I
F
I
N
SGNVS
K
V
Y
T
L
E
M
T
V
K
VPAGLKEA
D
L
A
R
P
V
V
E
I
K
DLATGNTE
Y
E
I
Y
V
FGEQ
T
M
I
V
P
VNR
1
PsiBlast_PDB
48.90
37%
-91
- C3 -
-
3OIC
-
FABL_BACSU
A:
[18-59]
---------------------------------------------------------------------------------
K
A
A
-
A
I
R
L
A
E
N
G
Y
N
----------
I
V
----
I
N
Y
A
R
S
K
K
A
A
L
E
T
A
E
E
I
E
K
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
48.62
18%
27
- C2 -
-
2LUW
-
?
A:
[1-101]
-----------------------------------------------------------------------
G
N
V
L
K
N
N
T
P
V
S
N
L
T
G
N
K
G
S
E
V
F
Y
T
----------
F
T
----
V
D
R
N
A
T
A
V
V
S
I
S
G
G
S
G
D
A
D
L
Y
L
------
K
A
G
-
S
K
P
T
T
S
S
W
D
C
R
P
Y
R
Y
G
--
N
-----
N
E
S
C
S
V
S
A
A
P
G
T
T
------
Y
H
V
M
I
K
G
Y
S
N
Y
S
G
V
T
L
K
L
Q
Y
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
44.93
37%
-71
- C3 -
-
3OID
1
FABL_BACSU
A:
[18-52]
---------------------------------------------------------------------------------
K
A
A
-
A
I
R
L
A
E
N
G
Y
N
----------
I
V
----
I
N
Y
A
R
S
K
K
A
A
L
E
T
A
E
E
I
E
K
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
43.27
41%
20
- C1 -
-
3H6R
-
CLIT2_CLINE
A:
[119-149]
---------------------------------------------------------------------------------------------------------------------------------------------------------
V
D
V
E
V
G
V
Q
G
-----
N
T
L
V
Y
K
F
F
P
V
D
G
S
G
G
D
R
P
A
W
R
F
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
42.71
14%
9
* C3 *
-
1G2C
-
FUS_HRSVR
A:
[160-209]
-------------------------------------------------------------------
L
E
G
E
V
N
K
I
K
S
A
L
L
S
T
N
K
-
A
V
V
S
L
S
N
G
V
S
----------
V
L
----
T
S
K
V
L
D
L
K
N
Y
I
D
K
Q
L
L
P
I
V
N
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
40.31
16%
110
- C3 -
-
1DIP
1
T22D3_PIG
A:
[1-77]
-----------------------------------------------------------------------------
M
D
L
V
K
N
H
-
L
M
Y
A
V
R
E
E
V
E
----------
I
L
----
K
E
Q
I
R
E
L
V
E
K
N
S
Q
L
E
R
E
N
T
L
L
K
------
T
L
A
----
S
P
E
Q
L
E
K
F
Q
S
R
L
S
-
P
E
-----
E
P
A
P
E
T
P
E
A
P
E
A
P
G
G
S
A
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
37.02
15%
-9
- C3 -
-
2KL8
-
?
A:
[3-24]
------------------------------------------------------
M
D
I
R
F
R
G
D
D
L
E
A
-
F
E
K
A
L
K
E
M
I
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
35.84
13%
-59
- C3 -
-
2QSB
-
Y600_THEAC
A:
[7-46]
--------------------------------------------------------
V
D
Q
N
L
--
F
N
E
-
V
M
Y
L
L
D
E
L
S
Q
D
I
T
V
P
K
N
-
V
R
K
V
A
Q
D
S
K
A
----------
K
L
----
S
Q
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
29.30
16%
-11
- C3 -
-
2LSE
-
?
A:
[10-41]
----------------------------------------------------------------
E
K
-
L
E
K
I
L
D
E
V
T
D
G
A
--
P
D
E
-
A
R
E
R
I
E
K
L
A
K
----------
D
V
----
K
D
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
27.10
17%
123
- C3 -
-
2KK7
-
VATE_METJA
A:
[1-52]
----------------------------------------------------------------------
M
A
V
K
L
M
G
V
D
K
I
K
S
K
-
I
L
D
D
A
K
A
E
A
N
----------
K
I
----
I
S
E
A
E
A
E
K
A
K
I
L
E
K
A
K
E
E
A
E
K
R
------
K
A
E
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
25.23
25%
83
- C3 -
-
4QXB
-
?
B:
[6-25]
-------------------------------------------------------
H
F
E
L
E
G
--
L
R
C
-
L
V
D
K
L
E
S
L
P
L
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
22.08
8%
28
- C3 -
-
1WA8
-
B:
[601-625]
---------------------------------------------------
M
T
E
Q
Q
W
N
F
A
G
--
I
E
A
-
A
A
S
A
I
Q
G
N
V
T
S
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
7.52
20%
-
- C- -
-
3FX7
-
?
B:
[5-25]
-------------------------------------------------------
Q
M
D
T
E
E
--
V
R
E
-
F
V
G
H
L
E
R
F
K
E
L
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------