@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VU90: (2017-12-17 )
MNAPVNFNHETQPEFELPIKNYQEFYRFYLTEHRNIMSRCLHAVGSSIGLYFFSKAIRKKQAKYALYGLVSGYACAWVGHFMFEKNKPASFKQPLYSFISDWRMLSDVATGRLSLIDRKHDKIPS
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------.........10.-.......20.--.......30---....-----..--------------------...40...------...-..50........60----------------....-------.....70-----------.........------80....---....-90.------.......100...----..--..110.......120...---------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------MNAPVNFNHETQ-PEFEL
P
I
K
N
Y
--
Q
E
F
Y
R
F
Y
L
----
T
E
H
R
-----
N
I
--------------------
M
S
R
C
L
H
A
V------GS
S
-
I
G
L
Y
F
F
S
K
A
I
R
K
K
-----------------
Q
A
K
Y
-------
A
L
Y
G
L
V------------S
G
Y
A
C
A
W
V
G
------
H
F
M
FEK---NKPA-
S
F
K
------
Q
P
L
Y
S
F
I
S
D
W
R
M
L
----
S
D
--VATG
R
L
S
L
ID
R
K
HDKIPS---------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
69.89
26%
-48
- C5 -
-
1AMZ
1
?
A:
[218-325]
------------------------------------------------------------------------------------------------------
T
D
-
P
Q
F
---------
T
E
L
M
R
L
Y
L
----
T
I
H
S
DHEGG
N
V
--------------------
S
A
H
T
S
H
L
V
------
G
S
A
-
L
S
D
P
Y
L
S
F
A
A
A
M
N
-----------------
G
L
A
G
-------
P
L
H
G
L
A
------------
N
Q
E
V
L
L
W
L
S
------
Q
L
Q
K
D
L
---
G
A
D
A
-
S
-
D
------
E
K
L
R
D
Y
I
--
W
N
T
L
----
N
S
GR
V
V
P
G
Y
G
H
A
V
L
R
K
T
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
69.46
26%
-50
- C5 -
-
1CSI
1
CISY_CHICK
A:
[218-325]
------------------------------------------------------------------------------------------------------
T
D
-
P
Q
F
---------
T
E
L
M
R
L
Y
L
----
T
I
H
S
DHEGG
N
V
--------------------
S
A
H
T
S
H
L
V
------
G
S
A
-
L
S
D
P
Y
L
S
F
A
A
A
M
N
-----------------
G
L
A
G
-------
P
L
H
G
L
A
------------
N
Q
E
V
L
L
W
L
S
------
Q
L
Q
K
D
L
---
G
A
D
A
-
S
-
D
------
E
K
L
R
D
Y
I
--
W
N
T
L
----
N
S
GR
V
V
P
G
Y
G
H
A
V
L
R
K
T
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
69.27
26%
-45
- C5 -
-
1CSS
1
CISY_CHICK
A:
[218-325]
------------------------------------------------------------------------------------------------------
T
D
-
P
Q
F
---------
T
E
L
M
R
L
Y
L
----
T
I
H
S
DHEGG
N
V
--------------------
S
A
H
T
S
H
L
V
------
G
S
A
-
L
S
D
P
Y
L
S
F
A
A
A
M
N
-----------------
G
L
A
G
-------
P
L
H
G
L
A
------------
N
Q
E
V
L
L
W
L
S
------
Q
L
Q
K
D
L
---
G
A
D
A
-
S
-
D
------
E
K
L
R
D
Y
I
--
W
N
T
L
----
N
S
GR
V
V
P
G
Y
G
H
A
V
L
R
K
T
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
68.08
26%
-50
- C5 -
-
1AL6
1
A:
[220-327]
------------------------------------------------------------------------------------------------------
T
D
-
P
Q
F
---------
T
E
L
M
R
L
Y
L
----
T
I
H
S
DHEGG
N
V
--------------------
S
A
H
T
S
H
L
V
------
G
S
A
-
L
S
D
P
Y
L
S
F
A
A
A
M
N
-----------------
G
L
A
G
-------
P
L
H
G
L
A
------------
N
Q
E
V
L
L
W
L
S
------
Q
L
Q
K
D
L
---
G
A
D
A
-
S
-
D
------
E
K
L
R
D
Y
I
--
W
N
T
L
----
N
S
GR
V
V
P
G
Y
G
H
A
V
L
R
K
T
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
67.07
26%
-52
- C5 -
-
2CTS
2
CISY_PIG
A:
[223-327]
-----------------------------------------------------------------------------------------------------------------
Q
F
--
T
E
L
M
R
L
Y
L
----
T
I
H
S
DHEGG
N
V
--------------------
S
A
H
T
S
H
L
V
------
G
S
A
-
L
S
D
P
Y
L
S
F
A
A
A
M
N
-----------------
G
L
A
G
-------
P
L
H
G
L
A
------------
N
Q
E
V
L
V
W
L
T
------
Q
L
Q
K
E
V
---
G
K
D
V
-
S
-
D
------
E
K
L
R
D
Y
I
--
W
N
T
L
----
N
S
GR
V
V
P
G
Y
G
H
A
V
L
R
K
T
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
67.04
26%
-36
- C5 -
-
1CSH
1
?
A:
[218-325]
------------------------------------------------------------------------------------------------------
T
D
-
P
Q
F
---------
T
E
L
M
R
L
Y
L
----
T
I
H
S
DHEGG
N
V
--------------------
S
A
H
T
S
H
L
V
------
G
S
A
-
L
S
D
P
Y
L
S
F
A
A
A
M
N
-----------------
G
L
A
G
-------
P
L
H
G
L
A
------------
N
Q
E
V
L
L
W
L
S
------
Q
L
Q
K
D
L
---
G
A
D
A
-
S
-
D
------
E
K
L
R
D
Y
I
--
W
N
T
L
----
N
S
GR
V
V
P
G
Y
G
H
A
V
L
R
K
T
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
67.01
26%
-39
- C5 -
-
6CSC
2
CISY_CHICK
A:
[220-327]
------------------------------------------------------------------------------------------------------
T
D
-
P
Q
F
---------
T
E
L
M
R
L
Y
L
----
T
I
H
S
DHEGG
N
V
--------------------
S
A
H
T
S
H
L
V
------
G
S
A
-
L
S
D
P
Y
L
S
F
A
A
A
M
N
-----------------
G
L
A
G
-------
P
L
H
G
L
A
------------
N
Q
E
V
L
L
W
L
S
------
Q
L
Q
K
D
L
---
G
A
D
A
-
S
-
D
------
E
K
L
R
D
Y
I
--
W
N
T
L
----
N
S
GR
V
V
P
G
Y
G
H
A
V
L
R
K
T
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
66.73
26%
-40
- C5 -
-
1CSR
1
CISY_CHICK
A:
[218-325]
------------------------------------------------------------------------------------------------------
T
D
-
P
Q
F
---------
T
E
L
M
R
L
Y
L
----
T
I
H
S
DHEGG
N
V
--------------------
S
A
H
T
S
H
L
V
------
G
S
A
-
L
S
D
P
Y
L
S
F
A
A
A
M
N
-----------------
G
L
A
G
-------
P
L
H
G
L
A
------------
N
Q
E
V
L
L
W
L
S
------
Q
L
Q
K
D
L
---
G
A
D
A
-
S
-
D
------
E
K
L
R
D
Y
I
--
W
N
T
L
----
N
S
GR
V
V
P
G
Y
G
H
A
V
L
R
K
T
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
66.65
26%
-50
- C5 -
-
1CTS
1
CISY_PIG
A:
[223-327]
-----------------------------------------------------------------------------------------------------------------
Q
F
--
T
E
L
M
R
L
Y
L
----
T
I
H
S
DHEGG
N
V
--------------------
S
A
H
T
S
H
L
V
------
G
S
A
-
L
S
D
P
Y
L
S
F
A
A
A
M
N
-----------------
G
L
A
G
-------
P
L
H
G
L
A
------------
N
Q
E
V
L
V
W
L
T
------
Q
L
Q
K
E
V
---
G
K
D
V
-
S
-
D
------
E
K
L
R
D
Y
I
--
W
N
T
L
----
N
S
G
R
V
V
P
G
Y
G
H
A
V
L
R
K
T
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
66.49
26%
-54
- C5 -
-
4CTS
-
CISY_PIG
A:
[223-327]
-----------------------------------------------------------------------------------------------------------------
Q
F
--
T
E
L
M
R
L
Y
L
----
T
I
H
S
DHEGG
N
V
--------------------
S
A
H
T
S
H
L
V
------
G
S
A
-
L
S
D
P
Y
L
S
F
A
A
A
M
N
-----------------
G
L
A
G
-------
P
L
H
G
L
A
------------
N
Q
E
V
L
V
W
L
T
------
Q
L
Q
K
E
V
---
G
K
D
V
-
S
-
D
------
E
K
L
R
D
Y
I
--
W
N
T
L
----
N
S
G
R
V
V
P
G
Y
G
H
A
V
L
R
K
T
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
62.98
26%
-42
- C5 -
-
3ENJ
-
CISY_PIG
A:
[223-327]
-----------------------------------------------------------------------------------------------------------------
Q
F
--
T
E
L
M
R
L
Y
L
----
T
I
H
S
DHEGG
N
V
--------------------
S
A
H
T
S
H
L
V
------
G
S
A
-
L
S
D
P
Y
L
S
F
A
A
A
M
N
-----------------
G
L
A
G
-------
P
L
H
G
L
A
------------
N
Q
E
V
L
V
W
L
T
------
Q
L
Q
K
E
V
---
G
K
D
V
-
S
-
D
------
E
K
L
R
D
Y
I
--
W
N
T
L
----
N
S
G
R
V
V
P
G
Y
G
H
A
V
L
R
K
T
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
58.85
16%
-121
- C5 -
-
5TJ5
-
VATO_YEAST
B:
[1-213]
--------------------------------------------------------------------------------------------
M
N
K
E
S
K
D
D
D
M
S
L
-
G
K
F
S
F
S
H
F
L
Y
YV
Y
G
L
Y
K
L
F
T
----
G
H
G
S
-----
D
I
N
F
GK
F
L
L
R
T
S
P
Y
MWAN
L
G
I
A
L
C
V
G
L
S
V
V
------
G
A
A
-
W
G
I
F
I
T
G
S
S
M
I
G
A
GVRAPRITTKNL
I
S
I
I
F
C
E
V
V
-------
A
I
Y
G
L
I
I
A
I
V
F
SSKSNLY
T
G
Y
S
L
F
W
A
G
------
I
T
V
G
A
S
---
N
L
I
C
-
G
I
A
------
V
G
I
T
G
A
T
A
A
I
S
F
V
----
K
I
--
L
V
I
E
I
F
G
S
I
L
G
L
L
G
L
I
V
G
L
L
M
A
G
KASEFQ----------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
54.44
17%
51
- C5 -
-
4AG6
-
?
A:
[3-385]
S
G
I
N
D
GSGIVLGKDRDG
G
L
V
L
V
DIWKRGGDRTNS
N
W
T
I
L
A
K
P
GAG
K
S
F
T
A
K
M
L
L
L
R
E
Y
M
Q
G
S
R
V
I
I
IDPEREY
K
E
M
C
R
K
L
GGVWINCTGGEG
K
I
N
P
L
Q
V
R
L
R
P
Q
-
S
P
L
A
L
H
I
Q
T
L
--
R
T
F
F
S
L
Y
L
RDLT
D
T
E
K
-----
A
A
--------------------
L
E
D
A
L
V
E
V
------
Y
K
E
-
A
G
I
T
W
D
T
D
P
R
G
V
P
-----------------
N
D
K
W
-------
P
T
-----------------------
V
K
------
E
L
Y
E
Y
C
---
V
K
K
A
-
E
E
N
------
P
E
T
Y
G
R
L
S
--
V
L
L
----
K
R
--
A
A
E
G
A
D
S
Y
L
W
A
G
P
T
A
V
E
A
DSD
F
I
V
F
D
VHDLQNAE
D
Q
V
K
R
A
Q
Y
F
N
V
L
S
F
A
W
N
I
L
E
R
D
RRER
T
V
L
V
V
D
EAWMLVDPQTP
Q
A
I
A
F
L
R
D
T
S
K
R
I
R
K
Y
N
G
S
L
I
V
I
S
Q
N
V
I
D
F
L
APEV
Q
R
Y
G
Q
A
L
L
D
NPT
Y
K
L
L
L
AQG
E
K
D
L
E
A
I
T
T
L
M
NLS
E
A
E
H
D
L
L
V
N
AKRG
E
G
L
F
V
A
GT
Q
R
I
H
I
K
I
E
A
A
PYEMQY
1
PsiBlast_PDB
51.14
22%
-30
- C5 -
-
5CSC
-
?
B:
[223-315]
-----------------------------------------------------------------------------------------------------------------
Q
F
--
T
E
L
M
R
L
Y
L
----
T
I
H
S
DHEGG
N
V
--------------------
S
A
H
T
S
H
L
V
------
G
S
A
-
L
S
D
P
Y
L
S
F
A
A
A
M
N
-----------------
G
L
A
G
-------
P
L
H
G
L
A
------------
N
Q
E
V
L
G
W
L
A
------
Q
L
Q
K
A
A
---
G
A
D
A
-
S
L
R
------
D
Y
I
W
N
T
L
N
S
G
R
V
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
50.15
19%
7
- C4 -
-
2R2C
-
?
A:
[36-180]
-----------------------------------------------------------------------------------------------------
K
S
Y
-
K
T
W
D
V
P
I
A
K
I
--
N
I
F
A
V
A
E
Y
----
T
D
T
Q
-----
K
I
--------------------
K
V
T
V
K
G
K
I
LEG
N
T
L
P
K
S
M
V
Q
V
Y
L
L
E
D
--
K
N
H
-----------------
V
L
R
G
-------
A
V
N
G
I
W
-------------
G
E
E
F
V
N
L
K
------
D
Y
L
Y
T
Y
A
V
E
P
L
S
G
M
S
F
V
------
A
E
N
Y
S
I
V
A
F
V
Y
-------
D
--
V
Q
T
F
E
--
V
Y
D
V
V
H
V
K
I
N
P
QS-------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
45.76
25%
-44
- C5 -
-
5CTS
1
CISY_CHICK
A:
[223-291]
-----------------------------------------------------------------------------------------------------------------
Q
F
--
T
E
L
M
R
L
Y
L
----
T
I
H
S
DHEGG
N
V
--------------------
S
A
H
T
S
H
L
V
------
G
S
A
-
L
S
D
P
Y
L
S
F
A
A
A
M
N
-----------------
G
L
A
G
-------
P
L
H
G
L
A
------------
N
Q
E
V
L
G
W
L
A
------
Q
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
45.15
25%
-41
- C5 -
-
6CTS
1
CISY_CHICK
A:
[223-291]
-----------------------------------------------------------------------------------------------------------------
Q
F
--
T
E
L
M
R
L
Y
L
----
T
I
H
S
DHEGG
N
V
--------------------
S
A
H
T
S
H
L
V
------
G
S
A
-
L
S
D
P
Y
L
S
F
A
A
A
M
N
-----------------
G
L
A
G
-------
P
L
H
G
L
A
------------
N
Q
E
V
L
G
W
L
A
------
Q
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
45.07
16%
21
- C5 -
-
4FFE
-
?
X:
[0-149]
-------------------------------------------------------------------------------------------G
H
K
L
A
F
N
F
N
L
E
I
N
G
S
D
T
H
S
T
V
D
V
Y
--
L
D
D
S
Q
I
I
T
----
F
D
G
K
-----
D
I
--------------------
R
P
T
I
P
F
M
I
------
G
D
E
-
I
F
L
P
F
Y
K
N
V
F
S
E
F
-----------------
F
S
L
F
RRVPTST
P
Y
E
D
L
T
------------
Y
F
Y
E
C
D
Y
T
D
NKSTFD
Q
F
Y
L
Y
N
---
G
E
E
Y
-
T
V
K
TQEATN
K
N
M
W
L
T
T
S
E
F
R
L
K
KWFD
G
E
--
D
C
I
M
H
L
R
S
L
V
R
K
M
E
D
S
K
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
44.89
25%
-36
- C5 -
-
4CSC
2
CISY_CHICK
A:
[223-291]
-----------------------------------------------------------------------------------------------------------------
Q
F
--
T
E
L
M
R
L
Y
L
----
T
I
H
S
DHEGG
N
V
--------------------
S
A
H
T
S
H
L
V
------
G
S
A
-
L
S
D
P
Y
L
S
F
A
A
A
M
N
-----------------
G
L
A
G
-------
P
L
H
G
L
A
------------
N
Q
E
V
L
G
W
L
A
------
Q
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
44.81
25%
-33
- C5 -
-
1CSC
2
A:
[223-291]
-----------------------------------------------------------------------------------------------------------------
Q
F
--
T
E
L
M
R
L
Y
L
----
T
I
H
S
DHEGG
N
V
--------------------
S
A
H
T
S
H
L
V
------
G
S
A
-
L
S
D
P
Y
L
S
F
A
A
A
M
N
-----------------
G
L
A
G
-------
P
L
H
G
L
A
------------
N
Q
E
V
L
G
W
L
A
------
Q
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------