@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VUC8: (2017-12-18 )
MSKHVYRHVCSYFKENKISIFLRPLQYTEIDLIWQQINRRELITQLYLQKQEHLELTDCFYDVKHWDAYHLENDPPKLKELYEQGALFIGTFDASEQLAGISVVSNQTITDYPNAKLLQYFYVDADQQGKGIGAKLMQAAKESAKQLEAHQLYISATPSKRTVDFYIKHGAVVLKHPDRQLWELEPEDIHLLCTL
Atome Classification :
(20 SA)
.........10........20........30........40........50.......-.60........70........80..-.-.....90........100......---------.110-.---........120.......130.......140...-...-.150.....--.-.-------------------------160........170--.........180--.--.-.--....190...-
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
MS
K
H
V
Y
R
H
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KEN
K
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RPLQ
Y
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Y
L
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Q
EHL
E
L
T
D
-
C
F
YDVKHW
D
A
YHLEND
P
P
K
L
K
E
L
Y
E-Q-G
A
L
F
I
G
TFDASEQLA
G
I
S
V
VSNQT---------IT---D---YPNA
K
L
L
Q
Y
F
Y
VDADQQGK
G
I
G
A
K
L
M
Q
A
A
K
E
S
A
K
-QLE-
A
H
Q
L
Y
I
SAT--P-S-------------------------K
R
-
T
V
D
F
Y
I
KH
G
----
A
V
V
L
KHPDRQ
L
W
--E--L-E--PE
D
I
H
L
L
C
TL-
33
HHSearch
81.70
20%
-113
- C1 -
-
1YR0
-
?
B:
[4-150]
------------------
S
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------------
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D
L
E
-----
N
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-
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---
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---
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-
G
N
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-
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A
A
I
E
--
A
E
N
-------------------------
T
A
-
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E
S
L
G
----
F
R
V
V
G
R
F
S
E
V
G
----------------------
26
HHSearch
74.81
18%
-99
- C1 -
-
2J8M
5
MDDA_PSEA7
B:
[3-149]
-------------------
A
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-
P
--------
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A
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--------
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---------
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A
A
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--
S
G
N
-------------------------
A
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-
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R
R
L
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----
F
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M
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Q
V
G
----------------------
36
HHSearch
73.89
16%
-54
- C1 -
-
4E2A
-
?
B:
[2-172]
-----------------
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--------
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--
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---------
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---
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EQV
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--
E
K
N
-------------------------
V
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-
A
Q
L
L
Y
A
K
Y
G
----
F
E
Q
F
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--
N
--
K
-
V
--
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S
L
-
37
HHSearch
73.78
16%
-56
- C1 -
-
4E2A
-
?
A:
[3-172]
------------------
Q
V
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--
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--------
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--
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A
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N
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---------
S
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---
T
EQV
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A
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-
I
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V
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--
E
K
N
-------------------------
V
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-
A
Q
L
L
Y
A
K
Y
G
----
F
E
Q
F
S
K
H
S
F
F
V
G
--
N
--
K
-
V
--
D
T
D
W
L
L
K
K
S
L
-
32
HHSearch
73.60
16%
-90
- C- -
-
1YVO
-
MDDA_PSEAE
B:
[2-164]
------------------
S
A
S
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R
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A
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D
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P
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A
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E
T
-
P
--------
V
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L
A
N
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--------
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A
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F
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-
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A
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---------
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---
E
---
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A
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-
A
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-
L
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M
V
A
A
I
E
--
S
G
N
-------------------------
A
A
-
S
I
G
L
H
R
R
L
G
----
F
E
I
S
G
Q
M
P
Q
V
G
Q
KF
G
--
R
-
W
--
L
D
L
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F
M
Q
L
N
--
29
HHSearch
72.24
14%
-90
- C1 -
-
1N71
1
?
D:
[2-175]
-----------------
I
I
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P
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--
P
E
E
Y
G
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S
------------------------
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A
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------------------
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-
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D
--
D
L
D
HGTTLSQTDLYEHTFDKVASIQNLR
E
H
-
P
Y
E
F
Y
E
K
L
G
----
Y
K
I
V
G
V
L
P
N
A
-
N
--
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--
W
-
D
--
K
P
D
I
W
M
A
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T
I
-
41
HHSearch
70.91
14%
-117
- C1 -
-
5DWM
4
?
D:
[9-157]
------------------
M
P
V
I
R
D
F
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A
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E
T
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A
I
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T
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S
Y
E
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-
P
--------
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M
D
E
--------
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A
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A
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---------
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---
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-
A
L
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-
F
R
Q
L
L
A
V
I
G
DG
E
H
N
-------------------------
I
G
-
S
V
K
L
H
E
S
L
G
----
F
T
H
C
G
R
I
E
G
S
G
----------------------
40
HHSearch
70.09
14%
-102
- C1 -
-
5DWN
1
?
A:
[7-157]
----------------
H
H
M
P
V
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D
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--------
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V
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DG
E
H
N
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H
E
S
L
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----
F
T
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C
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9
PsiBlast_PDB
66.10
23%
-154
- C1 -
-
1VKC
-
?
A:
[63-157]
-----------------------------------------------------------------------------------------
F
F
V
A
L
N
E
R
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V
W
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C
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--
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-------------------------
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A
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Y
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E
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G
YKAR
A
L
I
M
E
K
P
--------------------------
34
HHSearch
65.53
15%
-23
- C1 -
-
1TIQ
4
PAIA_BACSU
A:
[2-170]
------------------
S
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--------
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--
50
Fugue
64.27
18%
-100
- C1 -
-
2KCW
-
YJAB_ECOLI
A:
[1-147]
M
V
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S
I
R
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------------------------
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----
E
--
Q
-
N
-------------------------
E
Q
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F
Y
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K
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----
F
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R
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--
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--
Y
P
L
L
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L
A
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V
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A
42
HHSearch
63.63
14%
-94
- C1 -
-
4MBU
-
?
A:
[1-148]
-----------------
S
N
A
M
I
R
C
A
K
K
E
D
L
N
A
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L
A
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A
V
Y
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Y
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------------
P
Q
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-----
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-
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--
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-------------------------
E
A
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L
H
Q
K
F
N
----
F
K
H
A
G
T
L
T
N
V
G
----------------------
35
HHSearch
62.97
15%
-24
- C1 -
-
1TIQ
1
PAIA_BACSU
B:
[2-170]
------------------
S
V
K
M
K
K
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E
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L
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I
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F
N
--
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--------
E
--------
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M
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A
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L
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S
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--
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SEE
M
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I
E
I
A
L
-
E
R
N
-
K
K
N
I
W
L
G
V
W
--
E
K
N
-------------------------
E
N
-
A
I
A
F
Y
K
K
M
G
----
F
V
Q
T
G
A
H
S
F
Y
M
G
--
D
--
E
-
E
--
Q
T
D
L
I
M
A
K
T
--
44
HHSearch
61.66
14%
-98
- C1 -
-
4L8A
7
?
A:
[3-159]
-----------------
M
Q
L
S
H
R
P
A
E
T
G
D
L
E
T
V
A
G
F
P
Q
D
R
D
E
L
F
Y
C
Y
P
K
---------------
A
I
W
P
F
-----
S
V
A
Q
L
A
A
A
I
A
-
E
-
R
R
G
S
T
V
A
V
H
-
D
G
Q
V
L
G
F
A
N
F
Y
Q
W
Q
------------------
H
G
D
F
C
A
L
G
N
M
M
V
A
P
A
A
R
G
L
G
V
A
R
Y
L
I
G
V
M
E
N
L
A
R
-
E
Q
Y
K
A
R
L
M
K
I
S
C
F
--
N
A
N
-------------------------
A
A
-
G
L
L
L
Y
T
Q
L
G
----
Y
Q
P
R
A
I
A
E
R
H
D
P
--
D
--
G
R
R
--
V
A
L
I
Q
M
D
K
P
--
39
HHSearch
60.39
11%
-89
- C1 -
-
4JXQ
1
?
B:
[2-165]
-----------------
M
T
A
T
L
R
D
A
V
A
A
D
L
R
S
I
T
E
I
Y
R
E
S
V
L
N
--
G
V
A
T
Y
E
------------
E
T
P
P
S
E
A
---
E
M
A
L
R
F
S
T
I
T
G
-
N
-
G
Y
P
Y
V
V
A
L
D
E
R
G
A
V
I
G
Y
A
Y
A
S
A
F
R
---------
N
R
---
T
---
A
Y
R
F
L
V
E
D
S
I
Y
L
S
P
E
A
R
G
K
G
I
G
K
A
L
L
S
E
L
V
G
R
C
T
-
A
L
G
-
F
R
Q
M
I
A
V
I
G
--
G
A
H
-------------------------
P
S
-
S
I
A
L
H
R
A
L
G
----
F
E
L
Q
G
L
M
K
A
T
G
F
--
K
--
H
-
G
RW
L
D
T
A
F
M
Q
R
P
--
38
HHSearch
59.54
13%
-39
- C1 -
-
4QC6
3
AACA_STAWA
A:
[4-179]
---------------
V
E
N
E
I
C
I
R
T
L
I
D
D
D
F
P
L
M
L
K
W
L
T
D
E
R
V
L
-
E
F
Y
G
G
R
D
-
K
-------
K
Y
T
L
E
S
L
--------
K
K
H
Y
T
E
P
W
E
-
D
-
E
V
F
R
V
I
I
E
Y
-
N
N
V
P
I
G
Y
G
Q
I
Y
K
M
Y
D
E
L
Y
T
D
Y
H
Y
P
K
---
T
---
D
E
I
V
Y
G
M
D
Q
F
I
G
E
P
N
Y
W
S
K
G
I
G
T
R
Y
I
K
L
I
F
E
F
L
K
K
E
R
N
-
A
N
A
V
I
L
D
P
H
--
K
N
N
-------------------------
P
R
-
A
I
R
A
Y
Q
K
S
G
----
F
R
I
I
E
D
L
P
E
H
E
L
--
H
EG
K
-
K
--
E
D
C
Y
L
M
E
Y
R
Y
-
28
HHSearch
58.83
14%
-20
- C1 -
-
1GHE
1
TTR_PSEAJ
A:
[4-156]
-------------------
A
Q
L
R
R
V
T
A
E
S
F
A
H
Y
R
H
G
L
A
Q
L
L
--
F
E
T
V
H
G
G
A
S
V
G
F
M
A
D
L
D
M
Q
Q
A
Y
A
W
C
--------
D
G
L
K
A
D
I
A
A
G
-
S
L
L
L
W
V
V
A
E
-
D
D
N
V
L
A
S
A
Q
L
S
L
C
Q
---------
K
P
---
N
---
G
L
N
R
A
E
V
Q
K
L
M
V
L
P
S
A
R
G
R
G
L
G
R
Q
L
M
D
E
V
E
Q
V
A
V
-
K
H
K
-
R
G
L
L
H
L
D
T
E
--
A
G
S
--------------------------
V
-
A
E
A
F
Y
S
A
L
A
----
Y
T
R
V
G
E
L
P
G
Y
C
----------------------
27
HHSearch
58.50
14%
-21
- C1 -
-
1GHE
2
TTR_PSEAJ
B:
[3-156]
------------------
H
A
Q
L
R
R
V
T
A
E
S
F
A
H
Y
R
H
G
L
A
Q
L
L
--
F
E
T
V
H
G
G
A
S
V
G
F
M
A
D
L
D
M
Q
Q
A
Y
A
W
C
--------
D
G
L
K
A
D
I
A
A
G
-
S
L
L
L
W
V
V
A
E
-
D
D
N
V
L
A
S
A
Q
L
S
L
C
Q
---------
K
P
---
N
---
G
L
N
R
A
E
V
Q
K
L
M
V
L
P
S
A
R
G
R
G
L
G
R
Q
L
M
D
E
V
E
Q
V
A
V
-
K
H
K
-
R
G
L
L
H
L
D
T
E
--
A
G
S
--------------------------
V
-
A
E
A
F
Y
S
A
L
A
----
Y
T
R
V
G
E
L
P
G
Y
C
----------------------
7
PsiBlast_PDB
58.22
29%
-108
- C1 -
-
2AE6
-
?
A:
[60-143]
------------------------------------------------------------------------------------------------
S
G
Q
Q
L
A
G
F
I
E
V
H
P
P
T
---------
S
L
---
A
---
A
H
Q
K
Q
W
L
L
S
I
G
V
S
P
D
F
Q
D
Q
G
I
G
G
S
L
L
S
Y
I
K
D
M
A
E
-
I
S
G
-
I
H
K
L
S
L
R
V
M
--
A
-
T
-------------------------
N
Q
E
A
I
R
F
Y
E
K
H
G
----
F
V
Q
E
A
H
---------------------------
48
Fugue
57.86
12%
-53
- C1 -
-
1I12
3
GNA1_YEAST
A:
[4-160]
L
P
D
G
F
Y
I
R
R
M
E
E
G
D
L
E
Q
V
T
E
T
L
K
V
L
T
T
V
G
------
T
I
T
P
E
S
F
C
K
L
I
K
Y
W
N
E
----------------------
A
T
V
W
N
D
K
K
I
M
Q
-
Y
-
N
P
M
V
I
V
D
K
R
T
E
T
V
A
A
T
G
N
I
I
I
E
R
K
---------
I
I
H--
E
---
L
G
L
C
G
H
I
E
D
I
A
V
N
S
K
Y
Q
G
Q
G
L
G
K
L
L
I
D
Q
L
V
T
I
G
F
-
D
Y
G
-
C
Y
K
I
I
L
D
----
C
-
D
-------------------------
E
K
-
N
V
K
F
Y
E
K
C
G
---------------------
F
-
S
--
N
A
G
V
E
M
Q
I
R
K
-