@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VUL6: (2017-12-19 )
MNTQDQTPKTELEEQQAENQQAINPDVETIELDKPIKMGSIEIAKLDIRKPNVMALQGVKITDLMQGDVSAICTVIPRVSNPTLTKAQINQLEPSDLAQIGAALILFLQPSSVRAAILQQQ
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.......--..---------10......---..20.-.-..--------------------....30---------------------....----....-40.....-.-..50..--..--....------60.-------.......---70........80........90.--.......100...----------------------------------------------....------110.......120---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MNTQDQT--P
K
---------
T
E
L
E
E
Q
Q
A---ENQQA-I-NP--------------------DV
E
T
I
E---------------------LDKP----IKMG-
S
I
E
I
A
K
L
-D-IRKP
N
V
--
M
A
--
L
QG
V
------
K
I
T
-------
D
LMQG
D
V
---
S
A
I
C
T
V
IPRVSNPTL
T
K
A
Q
INQL--
E
P
S
D
L
A
Q
I
G
A
A
L
I
----------------------------------------------
L
F
LQ------P
S
S
V
R
A
A
I
LQQQ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
63.66
21%
42
- C4 -
-
1AQZ
-
RNMG_ASPRE
A:
[1-149]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
T
W
T
C
I
N
Q
Q
L
E
D
--
K
R
---------
L
L
Y
S
Q
A
K
A
---
E
S
N
S
H
-
H
-
A
P
LSDGKTGSSYPHWFTNGYDG
N
G
K
L
I
K
---------------------
G
R
T
P
----
I
K
F
G
------
K
A
-
D
-
C
D
R
P
P
K
--
H
S
--
Q
N
G
M
------
G
K
D
-------
D
H
Y
L
L
E
F
---
P
---------
T
F
P
D
G
H
D
Y
K
F
D
S
K
--
K
P
K
E
--
N
P
G
P
A
R
V
----------------------------------------------
I
Y
T
Y
------
P
N
K
V
F
C
G
I
V
A
H
Q
RGNQ
G
D
L
R
L
C
S
H----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
59.44
23%
37
* C5 *
-
5IZL
1
SELB_HUMAN
A:
[22-615]
A
G
R
R
V
N
V
N
V
G
V
L
G
H
IDSG
K
T
A
L
A
R
A
L
S
T
T
ARERGITL
D
L
G
F
S
C
F
S
V
PLPARLRSSLPPGE
P
L
L
Q
V
T
L
VDCPGHASL
I
R
T
I
I
G
G
A
Q
I
ID
L
M
M
L
V
I
DVTKGMQ
T
Q
S
A
E
C
L
V
I
G
Q
I
ACQ
K
L
V
V
V
L
N
KIDLLPEGK
R
Q
A
A
I
D
K
M
T
K
K
M
Q
K
T
L
E
NTKFRG
A
P
I
I
P
V
A
AKPGGPT
E
A
P
Q
G
I
P
E
L
I
E
L
L
T
S
Q
I
S
I
P
T
R
D
P
S
--
G
P
---------
F
L
M
S
V
D
H
C
---
F
S
I
K
G
-
Q
-
G
T
--------------------
V
M
T
G
T
I
---------------------
L
S
G
S
----
I
S
L
G
D
S
V
E
I
P
A
L
-
K
V
V
K
K
V
K
S
--
M
Q
--
M
F
H
M
------
P
I
T
-------
S
A
M
Q
G
D
R
---
L
G
I
C
V
--
T
Q
F
D
P
K
L
L
E
R
G
L
V
C
A
----
P
E
S
L
H
T
V
H
A
A
L
I
----------------------------------------------
S
V
E
K
------
I
P
Y
F
R
G
P
L
Q
T
K
A
KFHITVGH
E
T
V
M
G
R
L
M
F
F
S
P
APDNFDQEPILDSFNFS
Q
E
Y
L
F
Q
EQYLSKGHCPR
Q
Q
W
A
L
V
E
F
E
K
P
V
T
C
P
R
L
C
L
V
I
G
S
R
LDTNTCRLA
F
H
G
I
LLHGLEDRNYADSFLPRLK
V
Y
K
L
K
H
K
H
G
L
V
E
R
AMDDY
S
V
I
G
RSLFKKETNIQLFVG
L
K
V
H
L
ST
G
E
L
G
I
I
D
S
A
F
GK
F
K
I
H
I
PGGLS
P
E
S
K
K
IE
P
S
Q
H
V
V
L
S
L
T
F
K
RYVFDTHK
R
M
V
Q
S
15
Fugue
56.58
22%
54
* C6 *
-
3DU1
-
?
X:
[0-236]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HMNVGEILRHY
A
A
G
K
R
N
F
--
Q
H
---------
I
N
L
Q
E
I
E
L
---
T
N
A
S
L
-
T
-
G
A
--------------------
D
L
S
Y
A
D
---------------------
L
-
R
Q
----
T
R
L
G
-
K
S
N
F
S
H
T
-
C
-
L
R
E
A
D
L
SE
A
I
--
L
W
G
I
----------------
D
L
S
E
A
D
L
---
Y
---
R
A
I
L
R
E
A
D
L
T
G
A
K
L
V
K
T
R
L
--
E
E
A
N
L
--
I
K
A
S
L
C
G---------------------------------------------
A
N
L
N
------
S
A
N
L
S
R
C
L
L
F
Q
A
DLRPSSNQRTDLGYVLLTGADLSYADLRAASLHHANLDGAKLCRANFGRTIQWGNLAADLSGASLQGADLSYANLESAILRKANLQGADLTGAILKDAELKGAIMPDGSIH-------------------------------------------------------------------------------------------------
19
Fugue
52.78
19%
59
- C5 -
-
1JOB
-
OMP_MOUSE
A:
[1-162]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------AEDGPQ
K
Q
Q
L
E
M
P
LVLD
Q
D
L
T
Q
Q
M
R
L
--
R
V
---------
E
S
L
K
Q
R
G
E
K
K
Q
D
G
E
K
L
-
I
-
R
P
--------------------
A
E
S
V
Y
R
---------------------
L
D
F
I
----
Q
Q
Q
K
L
Q
F
D
H
W
N
V
-
V
-
L
D
K
P
G
K
--
V
T
--
I
T
G
T
S
QNWTP
D
L
T
-------
N
L
M
T
R
Q
L
LDP
A
A
I
F
W
R
K
E
D
S
D
A
M
D
W
N
E
A
D
A
L
E
F
G
E
R
L
S
D
L
A
K
I
R
K
V
M
Y
----------------------------------------------
F
L
I
T
F
G
EGVE
P
A
N
L
K
A
S
V
V
F
N
Q
L---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
47.82
15%
21
- C4 -
-
2K4M
-
YA00_METTH
A:
[1-153]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
S
S
H
H
H
--
H
H
HSSG
L
V
P
R
G
S
H
M
W
N
D
L
A
---
V
Y
I
I
R
C
S
-
G
P
--------------------
G
T
R
V
V
E
V
GAGRFL
Y
V
S
D
Y
I
R
K
H
SKVD
L
V
L
T
D
----
I
K
P
S
-
H
G
G
I
V
R
D
-
D
-
I
T
S
P
R
M
--
E
I
--
Y
R
G
A
------
A
L
I
-------
Y
S
I
R
P
P
----
A
E
I
H
S
S
L
M
R
V
A
D
A
V
G
A
R
L
I
I
K
P
L
--
T
G
E
D
I
V
T
E
R
K
M
K
L
----------------------------------------------
V
N
Y
G
------
R
T
Y
F
Y
E
Y
I
A
E
V
R
S
R--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
47.28
15%
13
- C6 -
-
2J8K
1
?
A:
[15-195]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
P
R
G
S
H
M
--
D
V
---------
E
K
L
R
Q
L
Y
A
---
A
G
E
R
D
-
F
S
I
V
--------------------
D
L
R
G
A
V
---------------------
L
E
N
I
NLSG
A
I
L
H
-
G
A
M
L
D
E
A
-
N
-
L
Q
Q
A
N
L
SR
A
D
--
L
S
G
A
------
T
L
N
GADLRGA
N
L
S
K
A
D
L
---
S
D
A
I
L
D
N
A
I
L
E
G
A
I
L
D
E
A
V
L
N
Q
A
--
N
L
K
A
A
N
L
E
Q
A
I
L
S
HANIREADLSEANLEAADLSGADLAIADLHQANLHQAALERANLTG
A
N
L
E
------
D
A
N
L
E
G
T
I
L
E
G
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
38.73
25%
-54
- C4 -
-
3L09
-
?
A:
[6-53]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
D
P
-
I
-
R
P
--------------------
L
V
E
A
L
N
---------------------
A
E
A
P
----
L
K
L
W
-
S
V
L
V
T
C
L
G
D
-
V
S
R
D
G
V
--
I
E
--
V
S
G
V
------
A
L
S
-------
S
F
V
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
38.53
23%
-257
- C4 -
-
1MZG
-
SUFE_ECOLI
A:
[82-120]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
A
V
V
F
I
L
Y
D
Q
--
M
T
P
Q
D
I
V
N
F
--
D
V
R
P
W
F
E
K
M
A
-
L
T
----------------------------------------------
Q
H
L
T
------
P
S
R
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
37.95
30%
-143
- C2 -
-
2J8P
-
CSTF2_HUMAN
A:
[536-565]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
A
A
L
I
M
Q
V
L
Q
--
L
T
A
D
Q
I
A
M
L
--
P
P
E
Q
R
Q
S
I
L
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
36.86
26%
-37
- C4 -
-
3TJ6
-
?
B:
[1-23]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
D
I
Y
N
K
A
R
---
E
V
I
N
A
-
V
-
N
P
--------------------
V
I
E
A
L
E
---------------------
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
34.79
28%
25
- C4 -
-
2VPQ
1
?
A:
[100-158]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
F
-
I
-
G
P
--------------------
S
Y
Q
S
I
Q
------------------------------
K
M
G
-
I
K
D
V
A
K
A
-
E
-
M
I
K
A
N
V
--
P
V
--
V
P
G
---------
S
-------
D
G
L
M
K
D
V
---
S
E
A
K
K
I
A
K
K
I
G
Y
P
V
I
I
K
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
34.41
11%
-135
- C3 -
-
1K4N
-
YECM_ECOLI
A:
[82-125]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
L
F
K
---------------------
L
H
E
P
----
V
Q
V
A
-
H
W
Q
F
S
I
V
-
E
-
L
P
W
P
G
E
--
K
R
YP
H
E
G
W
------
E
H
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
33.63
21%
-276
- C4 -
-
3G0M
2
SUFE_SALTY
A:
[85-122]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
V
V
F
I
L
Y
H
Q
--
M
T
A
Q
D
I
V
H
F
--
D
V
R
P
W
F
E
K
M
A
-
L
A
----------------------------------------------
Q
H
L
T
------
P
S
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
31.38
34%
132
- C7 -
-
1OP2
-
VSPP_DEIAC
A:
[59-96]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
N
E
D
E
Q
T
R
N
P
K
---------
E
K
F
I
C
P
N
K
---
N
N
N
E
V
-
L
-
D
K
--------------------
D
I
M
L
I
K
---------------------
L
D
K
P
----
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
31.35
34%
116
* C7 *
-
1OP0
-
VSPP_DEIAC
A:
[59-96]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
N
E
D
E
Q
T
R
N
P
K
---------
E
K
F
I
C
P
N
K
---
N
N
N
E
V
-
L
-
D
K
--------------------
D
I
M
L
I
K
---------------------
L
D
K
P
----
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
25.21
31%
279
- C4 -
-
5A5B
-
SEM1_YEAST
Y:
[71-89]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
D
F
T
N
E
--
L
K
---------
A
E
L
D
R
Y
K
R
---
E
N
Q
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
25.10
31%
300
* C4 *
-
4CR2
-
SEM1_YEAST
Y:
[71-89]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
D
F
T
N
E
--
L
K
---------
A
E
L
D
R
Y
K
R
---
E
N
Q
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
13.02
9%
-
- C- -
-
4K12
-
?
B:
[1-82]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
D
S
E
R
D
K
--
A
R
---------
K
E
V
E
E
Y
V
K
---
K
I
V
G
E
-
S
-
Y
A
--------------------
K
S
T
K
------------------------
K
R
H
----
T
I
T
V
-
A
L
V
N
E
L
N
-
N
-
I
K
N
E
Y
L
--
N
K
--
I
V
E
S
------
T
----------------------------------
S
E
S
E
L
Q
I
L
--
M
M
E
S
R
S
K
V
D
E
A
V
S
----------------------------------------------
K
F
E
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
12.55
21%
-
- C1 -
-
2X82
-
?
B:
[81-109]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
---------------------
V
Q
H
P
----
I
P
A
G
---
P
L
P
A
G
-
Q
-
L
R
E
P
R
G
--
S
D
--
I
A
G
T
------
T
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
9.02
12%
-
- C4 -
-
4BJS
-
RIF1_YEAST
B:
[19-60]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
K
S
R
R
L
V
A
R
L
R
G
--
F
T
P
G
D
L
N
G
I
--
S
V
E
E
R
R
N
L
R
I
E
L
L
----------------------------------------------
D
F
M
M
------
R
L
E
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------