@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VUN0: (2017-12-19 )
MGLNMPEPTSTTAATTTSLAAVSLLPFINGNALLGAVLGAAFVAYLEKDLSAKQRIVFMLLCVGFGYLLGPEITSRTQYISSDATASMVAAIFAIYILIKLLDWVKNSTLAQLWKTFRGGGNS
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------.........10........20---...--------....------.30--..---.......40-....-...-----.-.50---------------------.........60..------------...---.--------..70..-----------......80-.........90....-----..--------..---100---......--------..------110----......---...120.-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------MGLNMPEPTSTTAA
T
T
T
S
L
A
A
---
V
S
L
--------LPFI------NG---
N
A
---
L
L
G
A
V
L
G
A
--
A
F
V
A
-
Y
L
E
-----
K
-
D
L
----------------------
S
A
K
Q
R
I
V
F
M
L
L
C
V
------------
G
F
G
---
Y
--------LLGPEI-----------TSR
T
Q
YI--SSD
A
T
A
S
M
V
A
A
I
F
A
I
-----
Y
I
--------
L
I
---
K
L
----
L
D
W
VKN--------
S
T
------
L
------
A
Q
L
W
K
T
---
F
RGGGNS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
55.94
13%
-63
* C4 *
-
2J9L
1
CLCN5_HUMAN
A:
[9-182]
-----------------------------------------------------------------HKTLAMDVMKPRRND
P
L
L
T
V
L
T
Q
D
S
M
T
V
E
D
V
E
T
I
I
S
E
T
T
Y
S
G
--------
F
P
V
V
------
V
S
---
R
E
SQR
L
V
G
F
V
L
R
R
--
D
L
I
I
-
S
I
E
-----
N
-
A
R
----------------------
K
K
Q
D
G
V
V
S
T
S
I
I
Y
FTEHSPPLPPYT
P
P
T
---
L
--------
K
L
R
N
I
L
-----------
D
L
S
P
F
T
V
--
T
D
L
T
P
M
E
I
V
V
D
I
F
R
K
L
GLR
Q
C
L
--------
V
T
H
NG
R
L
----
L
G
I
I
T
K
--------
K
D
------
V
------
L
K
H
I
A
Q
---
M
A
N
F
N
E
F
L
E
V--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
55.18
14%
-82
- C4 -
-
2D4Z
-
CICH_TORMA
A:
[527-770]
--------------------------------------------------------------------L
S
W
S
S
A
NKYNIQ
V
G
D
I
M
V
R
D
V
T
S
I
A
S
T
S
T
Y
G
D
L
---
L
H
V
L
R
Q
T
KLK
F
F
P
F
V
------
D
T
PDT
N
T
---
L
L
G
S
I
D
R
T
--
E
V
E
G
-
L
L
Q
-----
R
-
R
I
S
A
Y
R
RQP
A
A
A
A
E
ADEEFEEMLT
L
E
E
I
Y
R
W
E
Q
R
E
K
N
------------
V
V
V
---
N
--------
F
E
T
C
R
I
-----------
D
Q
S
P
F
Q
L
--
V
E
G
T
S
L
Q
K
T
H
T
L
F
S
L
-----
L
---------
G
L
---
D
R
----
A
Y
V
T
S
M
--------
G
K
------
L
V
G
V
V
A
L
A
E
I
Q
A
A
---
I
E
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
54.25
17%
-54
- C2 -
-
3WDO
-
?
A:
[3-455]
DYKMT
P
G
E
R
R
A
T
W
G
L
G
T
V
F
S
L
R
M
L
G
M
F
M
V
L
P
V
L
T
T
YGMALQGAS
E
A
L
I
G
I
A
I
G
I
Y
G
L
T
Q
A
V
F
Q
I
P
F
G
L
L
S
D
R
IG
R
K
P
L
I
V
G
G
L
A
V
F
A
A
G
S
V
I
A
A
L
S
D
S
I
W
G
---
I
I
L
--------
G
R
A
L
------
Q
G
---
S
G
---
A
I
A
A
A
V
-
M
--
A
L
L
S
-
D
L
T
-----
R
-
E
Q
----------------------
N
R
T
K
A
M
A
F
I
G
V
S
F
------------
G
I
T
---
F
--------
A
I
A
M
V
L
-----------
G
P
I
I
T
H
K
--
L
G
L
H
A
L
F
W
M
I
A
I
L
A
T
-----
T
G
--------
I
A
---
L
T
----
I
W
V
V
P
N
--------
S
S
------
T
------
H
V
L
N
R
E
---
S
G
M
V
K
G
S
F
S
K
V
L
A
E
P
R
L
L
K
L
N
F
G
I
M
C
L
H
M
L
L
M
S
T
F
V
A
L
P
G
Q
L
A
D
A
GFP
A
A
E
H
W
K
V
Y
L
A
T
M
L
I
A
F
G
S
V
V
P
F
I
I
Y
A
E
VKRK
M
K
Q
V
F
V
F
C
V
G
L
I
V
V
A
E
I
V
L
W
N
AQTQ
F
W
Q
L
V
V
G
V
Q
L
F
F
V
A
F
N
L
M
E
A
L
L
P
S
L
I
S
K
E
SPAGY
K
G
T
A
M
G
V
Y
S
T
S
Q
F
L
G
V
A
I
G
G
S
L
G
G
W
I
D
G
M
FD
G
Q
G
V
F
L
A
G
A
M
L
A
A
V
W
L
A
V
A
S
T
MKEPP
Y
V
S
S
L
R
I
EIPADIAAN
E
A
L
K
V
R
L
L
E
TEGVK
E
V
L
I
AEEEH
S
A
Y
V
K
I
DSKVTN
R
F
E
V
E
Q
A
I
R
QAL
25
Fugue
51.25
12%
-66
- C2 -
-
2YQR
-
A:
[1-119]
---------------------------------------------------------------------------------
G
S
S
G
S
S
G
G
M
H
Y
V
Q
D
K
L
F
V
G
L
---
E
H
A
--------
V
P
T
F
------
N
---------
V
K
E
K
V
E
G
P
GC
S
Y
L
Q
-
H
I
Q
-----
I
-
E
T
----------------------
G
A
K
V
F
L
R
G
K
G
S
G
C
------------
I
E
P
---
A
--------
S
G
R
E
A
F
-----------
E
P
M
Y
I
Y
I
--
S
H
P
K
P
E
G
L
A
A
A
K
K
L
C
-----
E
N
--------
L
L
---
Q
T
----
V
H
A
E
Y
S
--------
R
F
------
V
------
N
Q
I
N
T
A
---
V
P
L
P
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
50.28
18%
15
- C1 -
-
5DJE
1
ZUO1_YEAST
A:
[6-140]
--------------------------------------------------------------------------------
F
V
A
D
V
P
P
P
K
K
G
T
D
Y
D
----
F
Y
---
E
A
W
--------
G
P
V
F
------
E
A
---
E
A
---
R
F
S
K
---
K
--
T
P
I
P
-
S
L
G
-----
N
M
D
S
----------------------
S
K
K
E
V
E
Q
F
Y
A
F
W
H
------------
R
F
D
---
S
--------
W
R
T
F
E
F
LDEDVPDDSSN
R
D
H
K
R
Y
I
--
E
R
K
N
K
A
A
R
D
K
K
K
T
A
D
M
----
A
R
--------
L
V
---
K
L
----
V
E
R
A
V
S
E
D
P
R
I
K
M
F
K
E
------
E
------
E
K
K
E
K
E
---
R
R
K
W
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
50.03
16%
-70
* C2 *
-
5U9N
2
?
A:
[4-150]
----------------------------------------------------------------------------------------
E
A
D
Y
D
W
R
N
E
C
L
R
I
---
L
N
L
--------
L
R
K
E
------
Q
N
---
S
F
---
L
F
E
N
P
V
L
E
---------
S
-----
N
-
D
L
----------------------
T
E
E
T
K
N
R
Y
K
E
V
I
P
------------
E
A
C
D
Y
-
I
--------
T
I
E
K
R
L
-----------
N
N
K
N
Q
T
I
E-
N
P
H
E
F
E
R
L
V
K
L
I
F
S
N
-----
C
M
--------
I
F
---
N
P
NSGE
C
K
W
I
Y
D
--------
S
A
K
Q
S
L
N
K
F
------
N
N
L
W
N
K
SN
V
F
L
L
Y
S
N
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
49.89
12%
-45
- C- -
-
1EKR
-
MOAC_ECOLI
A:
[11-156]
--------------------------------------------------------------------------------
G
E
A
H
M
V
D
V
S
A
K
A
E
T
V
R
E
A
R
A
E
---
A
F
V
T
M
R
S
E
T
--
L
A
M
I
I
D
GRHH
K
G
---
D
V
---
F
A
T
A
R
I
A
G
--
I
Q
A
A
K
R
T
W
-----
D
-
L
I
----------------------
P
L
C
H
P
L
M
L
S
K
V
E
V
------------
N
L
Q
---
A
E
PEHN
R
V
R
I
E
T
L
C
R
-----------
L
T
G
K
T
G
V
--
E
M
E
A
L
T
A
A
S
V
A
A
L
T
I
-----
Y
D
--------
M
C
---
K
A
----
V
Q
--
K
D
--------
M
V
------
I
------
G
P
V
R
L
L
---
A
K
S
S
G
D
F
K----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
49.68
14%
21
- C2 -
-
4FFE
-
?
X:
[0-149]
-----------------------------------------------------------------------GHKLAFNFN
L
E
I
N
G
S
D
T
H
S
T
V
D
V
Y
L
D
D
S
Q
I
---
I
T
F
DGKDIRPT
I
P
F
M
------
I
G
---
D
E
---
I
F
L
P
F
Y
K
N
--
V
F
S
E
-
F
F
S
LFRRV
P
-
T
S
----------------------
T
P
Y
E
D
L
T
Y
F
Y
E
C
D
------------
Y
T
D
NKS
T
--------
F
D
Q
F
Y
L
-----------
Y
N
G
E
E
Y
T
VK
T
Q
E
A
T
N
K
N
M
W
L
T
T
S
E
-----
F
R
--------
L
K
---
K
W
----
F
D
--
G
E
--------
D
C
------
I
------
M
H
L
R
S
L
---
V
R
K
M
E
D
S
KR---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
45.66
15%
-15
- C2 -
-
2JPF
-
?
A:
[1-106]
-------------------------------------------------------------------------------------
K
Q
Q
L
Q
E
H
A
P
S
H
A
N
L
D
---------------
V
K
W
L
------
D
G
---
L
R
---
A
G
S
M
A
L
Q
G
--
D
V
K
V
-
W
M
Q
-----
N
-
L
E
----------------------
D
L
H
T
R
-------------------------------------
R
P
D
E
-----------
F
T
A
R
L
Q
Q
--
S
T
D
A
L
Y
S
H
L
E
A
Q
W
A
K
-----
Q
H
GTPPTASD
V
V
---
G
M
----
P
Q
W
Q
E
Y
--------
T
A
------
M
------
L
R
--
E
R
---
F
A
G
L
D
T
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
42.65
32%
0
- C- -
-
4AZJ
-
SERC_BACAO
A:
[221--105]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
T
M
-----------
L
Q
Y
A
T
H
I
--
K
S
D
S
L
Y
N
-
T
P
P
T
F
S
I
-----
Y
M
--------
L
R
---
N
V
----
L
D
W
I
K
D
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
41.27
28%
-90
- C3 -
-
3I3F
1
?
A:
[11-65]
-----------------------------------------------------------------------------------
G
M
P
T
P
T
F
L
V
C
P
D
V
V
K
F
E
N
---
V
G
Q
--------
I
A
V
V
------
N
G
---
M
V
---
Y
L
G
G
S
V
G
I
--
D
K
S
G
-
T
L
H
-----
K
-
G
L
----------------------
E
E
Q
T
R
Q
T
F
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
36.41
14%
-247
- C3 -
-
5B66
-
PSBX_THEVL
X:
[16-37]
-----------------------------------------------------------------------------------------------------------------------------
S
G
---
A
V
---
V
L
G
L
T
F
A
V
--
L
I
A
I
-
S
Q
I
-----
D
-
K
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
31.85
32%
-15
- C3 -
-
2BI3
1
SERC_BACAO
A:
[221-256]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
T
M
-----------
L
Q
Y
A
T
H
I
--
K
S
D
S
L
Y
N
-
T
P
P
T
F
S
I
-----
Y
M
--------
L
R
---
N
V
----
L
D
W
I
K
D
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
31.81
32%
-19
- C3 -
-
2BI2
1
SERC_BACAO
A:
[221-256]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
T
M
-----------
L
Q
Y
A
T
H
I
--
K
S
D
S
L
Y
N
-
T
P
P
T
F
S
I
-----
Y
M
--------
L
R
---
N
V
----
L
D
W
I
K
D
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
31.72
32%
-15
- C3 -
-
2BI9
1
SERC_BACAO
A:
[221-256]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
T
M
-----------
L
Q
Y
A
T
H
I
--
K
S
D
S
L
Y
N
-
T
P
P
T
F
S
I
-----
Y
M
--------
L
R
---
N
V
----
L
D
W
I
K
D
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
31.46
32%
-20
- C3 -
-
2BIE
1
SERC_BACAO
A:
[222-257]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
T
M
-----------
L
Q
Y
A
T
H
I
--
K
S
D
S
L
Y
N
-
T
P
P
T
F
S
I
-----
Y
M
--------
L
R
---
N
V
----
L
D
W
I
K
D
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
31.39
32%
-20
- C3 -
-
1W23
1
SERC_BACAO
A:
[221-256]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
T
M
-----------
L
Q
Y
A
T
H
I
--
K
S
D
S
L
Y
N
-
T
P
P
T
F
S
I
-----
Y
M
--------
L
R
---
N
V
----
L
D
W
I
K
D
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
31.36
32%
-19
- C3 -
-
2BIA
1
SERC_BACAO
A:
[221-256]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
T
M
-----------
L
Q
Y
A
T
H
I
--
K
S
D
S
L
Y
N
-
T
P
P
T
F
S
I
-----
Y
M
--------
L
R
---
N
V
----
L
D
W
I
K
D
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
31.31
32%
-20
- C3 -
-
2BIG
1
SERC_BACAO
A:
[222-257]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
T
M
-----------
L
Q
Y
A
T
H
I
--
K
S
D
S
L
Y
N
-
T
P
P
T
F
S
I
-----
Y
M
--------
L
R
---
N
V
----
L
D
W
I
K
D
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
31.03
32%
-10
- C3 -
-
2BI1
1
SERC_BACAO
A:
[221-256]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
T
M
-----------
L
Q
Y
A
T
H
I
--
K
S
D
S
L
Y
N
-
T
P
P
T
F
S
I
-----
Y
M
--------
L
R
---
N
V
----
L
D
W
I
K
D
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------