@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VUU6: (2017-12-20 )
MALNIPESLANLEANCGLFAVWMVLQHHGVQIDVAELIKVCRYDDEGTYTIALAFALKKLGFEVSFHSDHDPNISPSERMSYKEAKVLRIPTGPALSYQDIQTETQNGKMVIVYYDTLEGVGNQSLIYSIDQNEICFFDSFEPMSAAVFENQRKAEGICRQAVVIGDRNLNIHSTKLN
Atome Classification :
(20 SA)
----------------------------------------------.......-.--.10--.......---------.20....-----------....30----.--.------------....----...40--------....-------------------------..--------...50......---..60........-.70..-----....-----..80........90........100...----....110.---...------.------------.---------.120........130------.....----..---140.--........150.......160.......170......-------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
----------------------------------------------MALNI
P
E
-
S
--
L
A
N--LEAN
C
G
L
---------
F
A
V
W
M
V
L
-----------
Q
HHG
V
-----
Q
--
I
------------
D
V
A
E
----
L
I
K
V
---------CRYD-------------------------DE--------G
T
Y
T
I
A
L
A
F
A
L
---
K
KL-G
F
E
V
S
FHS-DHDPN-----I
S
P
S
-----
E
R
MSYKE
A
K
V
L
RIPTGPAL
S
Y
QDIQTET----QNG
K
M
V
I
V
---
Y
Y
D------T------------L---------EGV-GNQ
S
L
I
Y
S
IDQ------N
E
I
C
F
----FD---S--F--E
P
M
S
A
A
V
F
EN
Q
R
K
A
E
G
I
C
R
Q
A
V
V
I
GDRN
L
N
I
HSTKLN-------------------------------------------------------------------------------
42
Fugue
76.06
18%
-162
- C3 -
-
3K8U
-
?
A:
[5-141]
-------------------------------------------------
H
Y
K
L
-
V
--
P
Q
I
--
D
T
R
D
C
G
P
---------
A
V
L
A
S
V
A
-----------
K
H
Y
G
S
-----
N
--
Y
------------
S
I
A
Y
----
L
R
E
L
---------
S
K
T
N
-------------------------
K
Q
--------
G
T
T
A
L
G
I
V
E
A
A
---
K
K
L
-
G
F
E
T
R
S
I
K
-
A
D
M
T
L
-----
F
D
Y
N
-----
D
---------
L
T
Y
P
-----------------------
F
I
V
---
H
V
I
------
K
------------
G
---------
K
R
L
-
Q
H
Y
Y
V
V
Y
G
S
Q
N
------
N
Q
L
I
I
----
G
D
---
P
--
D
--
P
S
V
K
V
T
R
M
S
K
E
R
F
Q
S
E
W
T
G
L
A
I
F
L
A
P
Q
-----------------------------------------------------------------------------------------
49
Fugue
72.39
20%
-
* C4 *
-
4MUO
-
YBIB_ECOLI
A:
[1-320]
MD
Y
R
K
I
I
K
E
IGRGKNH
A
R
D
L
D
R
D
T
A
R
G
L
Y
A
H
M
L
N
GEVP
D
L
E
L
G
G
V
L
I
A
L
R
I
K
G
----------
E
G
E
A
E
M
---------
L
G
F
Y
E
A
M
-----------
Q
N
H
T
I
-----
K
--
L
------------
T
P
P
A
GK
P
M
P
I
V
I
---------
P
S
Y
N
GAR----------------------
K
Q
--------
A
N
L
T
P
L
L
A
I
L
L
---
H
K
L
-
G
F
P
V
V
V
H
G
V
S
E
D
P
T
-----
R
V
L
T
-----
E
T
I
F
E
L
------
M
G
I
T
P
T
L
H
G
G
Q
A
Q
A
K
L
----
D
E
H
Q
P
V
F
M
---
P
V
G
------
A
------------
F
---------
C
P
P
-
L
E
K
Q
L
A
M
R
W
R
M
GVRN
S
A
H
T
L
A
K
L
ATP
F
A
---
E
--
G
--
E
A
L
R
L
S
S
V
S
H
P
E
Y
I
G
R
V
A
K
F
F
S
D
I
G
G
R
A
L
L
M
H
G
T
E
G
E
VYANPQRC
P
Q
I
N
L
I
D
REGMRVLYEKQAKD
P
E
T
T
A
Q
W
I
E
R
C
L
A
GSEPIP
E
S
L
K
I
Q
M
A
C
C
L
V
A
T
GEAAT
I
S
D
G
L
A
R
V
N
Q
A
F
21
HHSearch
71.61
20%
-119
- C3 -
-
3K8U
-
?
A:
[5-141]
-------------------------------------------------
H
Y
K
L
-
V
--
P
Q
I
--
D
T
R
D
C
G
P
---------
A
V
L
A
S
V
A
-----------
K
H
Y
G
S
-----
N
--
Y
------------
S
I
A
Y
----
L
R
E
L
---------
S
K
T
N
-------------------------
K
Q
--------
G
T
T
A
L
G
I
V
E
A
A
---
K
K
L
-
G
F
E
T
R
S
I
K
-
A
D
M
T
------
L
----------------
F
D
Y
-----
N
D
L
T
Y
P
F
I
V
H
V
I
----
K
--------------------------------
G
---------
K
R
L
-
Q
H
Y
Y
V
V
Y
G
S
Q
N
------
N
Q
L
I
I
----
G
D
PDP
S
V
K
V
--
T
R
M
S
K
E
R
F
Q
S
E
W
T
-----
G
L
A
I
F
L
A
P
Q
-----------------------------------------------------------------------------------------
25
HHSearch
69.00
21%
-128
- C3 -
-
5XE9
-
?
A:
[2-128]
--------------------------------------------------
Y
K
L
-
V
--
P
Q
I
--
D
T
R
D
C
G
P
---------
A
V
L
A
S
V
A
-----------
K
H
Y
G
S
-----
N
--
Y
------------
S
I
A
Y
----
L
R
E
L
---------
S
K
T
N
-------------------------
K
Q
--------
G
T
T
A
L
G
I
V
E
A
A
---
K
K
L
-
G
F
E
T
R
S
I
K
-
A
D
M
T
L
-----
F
-----------------
D
Y
-----
N
D
L
T
Y
P
F
I
V
H
V
I
----
K
--------------------------------
G
---------
K
R
L
-
Q
H
Y
Y
V
V
Y
G
S
Q
N
------
N
Q
L
I
I
----
G
D
PDP
S
V
K
V
--
T
R
M
S
K
E
R
F
Q
S
E
W
T
-------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
66.69
32%
-194
- C3 -
-
3K8U
-
?
A:
[16-65]
-----------------------------------------------------------------
D
C
G
P
---------
A
V
L
A
S
V
A
-----------
K
H
Y
G
S
-----
N
--
Y
------------
S
I
A
Y
----
L
R
E
L
---------
S
K
T
N
-------------------------
K
Q
--------
G
T
T
A
L
G
I
V
E
A
A
---
K
K
L
-
G
F
E
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
66.21
21%
-27
- C3 -
-
2BU3
1
?
A:
[68-212]
------------------------------------------------
L
S
M
Q
F
-
V
--
T
Q
V
--
N
Q
A
Y
C
G
V
---------
A
S
I
I
M
V
L
-----------
N
S
L
G
I
-----
N
--
A
Y
R
V
F
--------
T
Q
D
N
----
F
F
S
-TKAVIA
P
--
E
V
V
A
-------------------------
R
Q
--------
G
M
T
L
D
E
L
G
R
L
I
---
A
S
Y
-
G
V
K
V
K
V
N
H
-
A
S
D
T
N
-----
I
--
E
-----
D
F
R
K
Q
V
A
E
--------------
N
---
L
K
----
Q
D
G
N
F
V
I
V
---
N
Y
L
------
R
------------
K
EIGQ-----
E
R
G
-
G
H
I
S
P
L
A
A
Y
N
E
QT----
D
R
F
L
I
----
M
D
-----------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
65.68
32%
-184
- C3 -
-
5XE9
-
?
A:
[12-61]
-----------------------------------------------------------------
D
C
G
P
---------
A
V
L
A
S
V
A
-----------
K
H
Y
G
S
-----
N
--
Y
------------
S
I
A
Y
----
L
R
E
L
---------
S
K
T
N
-------------------------
K
Q
--------
G
T
T
A
L
G
I
V
E
A
A
---
K
K
L
-
G
F
E
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
63.89
32%
-179
- C3 -
-
5XE8
-
?
A:
[12-61]
-----------------------------------------------------------------
D
C
G
P
---------
A
V
L
A
S
V
A
-----------
K
H
Y
G
S
-----
N
--
Y
------------
S
I
A
Y
----
L
R
E
L
---------
S
K
T
N
-------------------------
K
Q
--------
G
T
T
A
L
G
I
V
E
A
A
---
K
K
L
-
G
F
E
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
63.10
19%
-
- C3 -
-
4RY2
-
?
A:
[12-145]
----------------------------------------------------
C
-
V
--
R
Q
Y
--
D
L
T
D
C
G
A
---------
A
C
L
S
S
I
A
-----------
Q
Y
Y
G
L
-----
K
--
M
------------
S
L
A
K
----
I
R
E
M
---------
T
G
T
D
-------------------------
T
Q
--------
G
T
N
A
Y
G
L
I
H
A
A
---
K
Q
L
-
G
F
S
A
K
G
V
K
-
A
S
K
E
-------------------------------------
D
L
L
K
D
F
------
R
L
P
A
I
A
---
N
V
I
------
V
------------
D
---------
N
R
L
-
A
H
F
V
V
I
Y
S
I
K
N
------
R
I
I
T
V
----
A
D
PGK
G
--
I
--
V
R
Y
S
M
D
D
F
C
S
I
W
T
-------------------------------------------------------------------------------------------------------
24
HHSearch
62.93
19%
-
- C3 -
-
4RY2
-
?
B:
[12-145]
----------------------------------------------------
C
-
V
--
R
Q
Y
--
D
L
T
D
C
G
A
---------
A
C
L
S
S
I
A
-----------
Q
Y
Y
G
L
-----
K
--
M
------------
S
L
A
K
----
I
R
E
M
---------
T
G
T
D
-------------------------
T
Q
--------
G
T
N
A
Y
G
L
I
H
A
A
---
K
Q
L
-
G
F
S
A
K
G
V
K
-
A
S
K
-------------------------------------
E
D
L
L
K
D
F
------
R
L
P
A
I
A
---
N
V
I
------
V
------------
D
---------
N
R
L
-
A
H
F
V
V
I
Y
S
I
K
N
------
R
I
I
T
V
----
A
D
PGK
G
--
I
--
V
R
Y
S
M
D
D
F
C
S
I
W
T
-------------------------------------------------------------------------------------------------------
22
HHSearch
62.12
19%
25
* C3 *
-
3ERV
2
?
A:
[35-228]
------------------------------------------------
S
N
V
P
F
-
I
--
Q
Q
L
PE
L
D
R
G
C
E
V
---------
T
S
L
A
M
M
L
-----------
Q
Y
A
G
I
-----
T
--
V
------------
D
K
M
K
----
L
A
N
E
---------
I
K
K
V
D
FMNDG
V
R
G
N
PNEGFVGNIYTFS
E
S
G
Y
--------
G
V
Y
H
G
P
L
F
Q
L
A
---
K
K
Y
L
P
N
K
A
V
D
L
T
-------------------------------------
G
K
S
I
E
E
L
Y
K
S
V
----
K
A
G
Q
P
V
V
I
---
I
T
N
------
A
TFAPLDEDE
F
T
T
W
E
T
NN
G
D
V
S
I
T
Y
N
-
E
H
C
V
V
L
I
G
Y
D
Q
------
E
S
V
Y
I
----
R
D
PLK
D
--
S
L
D
V
K
V
P
R
E
K
F
E
Q
A
W
V
Q
M
--
G
S
Q
A
I
S
Y
V
K
R
S
K
---------------------------------------------------------------------------------------
29
HHSearch
60.36
17%
-82
- C3 -
-
3ZUA
-
HLYB3_ECOLX
A:
[2-130]
---------------------------------------------------------
D
S
C
--
H
K
I
D
Y
G
L
---------
Y
A
L
E
I
L
A
-----------
Q
Y
H
N
V
-----
S
--
V
------------
N
P
E
E
----
I
K
H
R
---------
F
D
T
D
-------------------------
G
T
--------
G
L
G
L
T
S
W
L
L
A
A
---
K
S
L
-
E
L
K
V
K
Q
V
K
-
K
T
I
D
R
-----
L
------------------------
N
F
I
S
L
P
A
L
V
W
R
E
----
D
---
G
------------------------------------------
R
H
F
I
-
L
T
K
V
S
K
EA----
N
R
Y
L
I
----
F
D
LEQ
R
N
-
P
--
R
V
L
E
Q
S
E
F
E
A
L
Y
Q
-----
G
H
I
I
L
I
A
S
R
S
S
---------------------------------------------------------------------------------------
30
HHSearch
58.83
21%
8
- C3 -
-
2BTW
-
?
A:
[68-212]
------------------------------------------------
L
S
M
Q
F
-
V
--
T
Q
V
--
N
Q
A
Y
C
G
V
---------
A
S
I
I
M
V
L
-----------
N
S
L
G
I
-----
N
--
A
P
E
T
AQYSP
Y
R
V
F
T
Q
D
N
----
F
F
S
N
E
K
T
K
A
V
IA
P
E
V
V
A
-------------------------
R
Q
--------
G
M
T
L
D
E
L
G
R
L
I
---
A
S
Y
-
G
V
K
V
K
V
N
H
-
A
S
D
T
N
-----
I
--
E
-----
D
F
R
K
Q
V
A
E
--------------
N
---
L
K
----
Q
D
G
N
F
V
I
V
---
N
Y
L
------
R
------------
K
EIGQ-----
E
R
G
-
G
H
I
S
P
L
A
A
Y
N
E
QT----
D
R
F
L
I
----
M
D
-----------------------------------------------------------------------------------------------------------------------------
46
Fugue
56.83
27%
-72
- C3 -
-
2LN3
-
?
A:
[1-83]
---------------------------------------------------------------------------------------------------------------------------
M
G
L
----
T
R
T
I
---------
T
S
Q
N
-------------------------
K
E
--------
E
L
L
E
I
A
L
K
F
I
S
---
Q
G
L
-
D
L
E
V
E
F
D
S
-
T
D
D
K
E
-----
I
E
E
F
-----
E
R
D
M
E
D
L
A
K
K
T
G
V
Q
---------
I
Q
K
Q
W
----
Q
G
N
K
L
R
I
R
---
L
K
G
------
S
------------
L
---------
E
H
H
-
H
H
H
H
-----------------------------------------------------------------------------------------------------------------------------------------------------
50
Fugue
56.28
16%
16
- C1 -
-
4KKR
-
?
A:
[9-241]
--------------------------------------V
I
E
A
N
L
S
L
N
Q
N
Q
L
A
S
-
N
--
G
G
Y
--
I
S
S
Q
L
G
I
R
NESC
E
T
V
K
F
K
Y
W
L
S
I
K
G
P
EG
I
Y
F
P
AK
A
V
V
G
V
D
TAG
R
M
--
L
------------
N
V
T
R
----
G
F
W
V
---------
P
E
Y
M
-------------------------
A
D
--------
G
K
Y
T
V
S
L
Q
V
V
A
ENG
K
V
F
-
K
A
N
Q
E
F
V
K
-
G
V
D
L
N
-----
S
L
P
E
LNGL
T
I
D
I
K
N
Q
F
G
I
N
S
V
E
S
T
G
G
F
V
P
F
T
V
D
L
N
N
G
----
R
E
G
E
A
N
V
E
---
F
W
M
------
T
------------
A
---------
V
G
P
D
G
L
I
I
P
V
N
A
R
E
K
------
W
V
I
A
S
----
G
D
---
T
--
Y
--
S
K
V
R
G
I
N
F
D
K
S
Y
P
A
G
E
Y
T
I
N
A
Q
V
V
D
I
V
S
G
E
R
V
E
Q
S
M
T
V
V
K
K---------------------------------------------------------------------------
27
HHSearch
55.47
11%
-80
- C3 -
-
1CV8
1
A:
[9-155]
-----------------------------------------------
L
E
N
F
K
I
R
E
--
T
Q
G
--
N
N
G
W
C
A
G
---------
Y
T
M
S
A
L
L
-----------
N
A
T
Y
N
-----
T
NK
Y
------------
H
A
E
A
----
V
M
R
F
---------
L
H
P
N
LQG
Q
Q
F
Q
------------------
F
T
--------
G
L
T
P
R
E
M
I
Y
F
G
---
Q
T
Q
-
G
R
S
P
Q
L
L
N
-
R
-
M
----------------------------------
T
T
Y
N
E
V
D
N
L
T
----
K
N
N
K
G
I
A
I
---
L
G
S
------
R
VESRN-------
G
---------
M
H
A
-
G
H
A
M
A
V
V
G
N
A
K
L
NNG
Q
-
E
V
I
I
I
----
W
N
PWD
N
G
-
F
--
M
T
Q
D
A
K
N
N
------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
52.21
24%
-10
- C3 -
-
5E4Z
1
?
A:
[88-184]
---------------------------------------------------------------------------------------------------
G
I
-----
S
--
A
------------
I
T
T
T
----
L
L
T
L
---------
C
Q
Q
G
-------------------------
D
H
I
V
S
A
SAIY
G
A
T
H
A
F
L
S
H
S
M
---
P
K
F
-
G
I
N
V
S
F
V
D
-
A
A
K
P
E
E
I
R
A
A
M
R
P
E
-----
T
K
V
V
Y
I
E
T
-----
P
A
N
P
T
L
S
L
V
D
I
E
T
V
A
G
I
A
H
Q
Q
G
A
L
L
V
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
HHSearch
50.98
10%
-79
- C3 -
-
1X9Y
-
SSPB_STAAU
B:
[228-360]
-----------------------------------------------
L
K
N
F
K
I
R
E
--
Q
Q
F
--
D
N
S
W
C
A
G
---------
F
S
M
A
A
L
L
-----------
N
A
T
K
N
-----
T
DT
Y
------------
N
A
H
D
----
I
M
R
T
---------
L
Y
P
E
VSEQDLP------------------
N
C
--------
A
T
F
P
N
Q
M
I
E
Y
G
---
K
S
Q
-
G
R
D
I
H
Y
Q
E
-
G
-----------------------------------
V
P
S
Y
N
Q
V
D
Q
L
T
----
K
D
N
V
G
I
M
I
---
L
A
Q
SVSQNP
N
------------
D
---------
P
H
L
-
G
H
A
L
A
V
V
G
N
A
K
INDQ--
E
K
L
I
Y
----
W
N
-----------------------------------------------------------------------------------------------------------------------------
43
Fugue
48.95
14%
12
- C3 -
-
3ERV
2
?
A:
[29-228]
------------------------------------------D
E
K
V
I
L
S
N
V
P
F
-
I
Q
Q
L
P
E
--
L
D
R
G
C
E
V
---------
T
S
L
A
M
M
L
-----------
Q
Y
A
G
I
-----
T
--
V
------------
D
K
M
K
----
L
A
N
E
---------
I
K
K
V
-------------------------
D
F
--------
M
N
D
G
V
R
G
N
P
N
E
---
G
F
V
-
G
N
I
Y
T
F
S
E
-
S
G
Y
G
V
-----
Y
H
G
P
-----
L
F
Q
L
A
K
K
Y
L
P
N
K
A
V
D
L
T
G
K
S
I
E
E
L
Y
K
S
V
----
K
A
G
Q
P
V
V
I
---
I
T
N
------
A
------------
T
---------
F
A
P
-
L
D
E
D
E
F
T
T
W
E
T
------
N
N
G
D
V
----
S
I
---
T
--
Y
--
N
E
H
C
V
V
L
I
-------
G
Y
D
Q
E
S
V
Y
I
R
D
P
L
K
D
S
L
D
V
K
V
P
R
E
K
F
E
Q
A
W
V
Q
M
GS
Q
A
I
S
Y
V
KRSK--------------------------------------------------------
28
HHSearch
46.97
9%
-52
- C3 -
-
1PXV
-
SSPB_STAAU
A:
[18-150]
-----------------------------------------------
L
K
N
F
K
I
R
E
--
Q
Q
F
--
D
N
S
W
A
A
G
---------
F
S
M
A
A
L
L
-----------
N
A
T
K
N
-----
T
DT
Y
------------
N
A
H
D
----
I
M
R
T
---------
L
Y
P
E
VSEQDLP------------------
N
C
--------
A
T
F
P
N
Q
M
I
E
Y
G
---
K
S
Q
-
G
R
D
I
H
Y
Q
E
-
G
-
V
----------------------------------
P
S
Y
N
Q
V
D
Q
L
T
----
K
D
N
V
G
I
M
I
L
A
Q
S
V
S
------
Q
NPN---------
D
---------
P
H
L
-
G
H
A
L
A
V
V
G
N
A
K
I
ND
Q
--
E
K
L
I
Y
----
W
N
-----------------------------------------------------------------------------------------------------------------------------