@TOME V2.3
(Mar 2018)

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3D Common Core:

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Complexes Modeling
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Values color: [ Good | Correct | Middling | Bad ]Sequence color : MutatedHelixStrandConserved

Query sequence : B0VV42: (2017-12-22 )
MLPLYVTSGEPAGIGPDICLSLAKRVDERPVVVLADRNLLHQRAQKLGLDIKFLEYSGQAESSLQGELYIEHVPLETIVVDGQLNAANAAYVLEQLRRSADYAMSGKSVGVATAPVQKSVINDAGILFSGHTEYYQEFAGVERVVMMLATKTLRVALATTHLPLRDVADAITKERLHQVIDILLRDLKTKFKINDPRVLVCGLNPHAGEDGYLGREEIDTINPVLESYRSQGVKLSLSLPADTLFTPEHLKNADAVLAMYHDQGLPVLKSQGFGEAINITLGLPFIRTSVDHGTALSLAGTGLAKSSSLNVAADLALSLAAS

Atome Classification :

(20 SA) .........10........20.....---.---...30--..---......40......-..50-......-..60--.--.------.--..--....70.------.--.-.-.-.--..80---....-....90........100.......110......-.120.......130.......140.......150.......160.......170.......180.....--..--190.......200.......210...-.-.-------..220.....-----------------------..----------------------230------.--........240.......----------250.......260.......270......----.280--.......290.......-300.-......310.......320
(Atome) (Ident) (Tito) (Num) (QMean) (Ligand) (Uniprot) MLPLYVTSGEPAGIGPDICL-SLAKR---V---DERPV--VV---LADRNLLHQRAQKL-GLDI-KFLEYS-GQA---E--S------S--LQ--GELYIEH------V--P-L-E-T--IVVD---GQLN-AANAAYVLEQLRRSADYAMSGKSVGVATAPVQK-SVINDAGILFSGHTEYYQEFAGVERVVMMLATKTLRVALATTHLPLRDVADAITKERLHQVIDILLRDL--KT--KFKINDPRVLVCGLNPHAGEDGYLGR-E-E-------IDTINPVLES-----------------------YR----------------------S--------Q--GVKLSLSLPADTLFTPEH----------LKNADAVLAMYHDQGLPVLKSQGFGEAIN----ITLG--LPFIRTSVDHGTALSLA-GTGL-AKSSSLNVAADLALSLAAS
33 HHSearch 83.0559% -40 - C1 - - 1YXO PDXA_PSEAE A:[2-326] SLRFALTPGEPAGIGPDLCL-LLARS---A---QPHPL--IA---IASRTLLQERAGQL-GLAI-DLKDVS--PA---AWPERP----A--KA--GQLYVWD------T--P-L-A-A--PVRP---GQLD-RANAAYVLETLTRAGQGCLDGHFAGMITAPVHK-GVINEAGIPFSGHTEFLADLTHTAQVVMMLATRGLRVALATTHLPLREVADAISDERLTRVARILHADL--RD--KFGIAHPRILVCGLNPHAGEGGHLGR-E-E-------IEVIEPCLER-----------------------LR----------------------G--------E--GLDLIGPLPADTLFTPKH----------LEHCDAVLAMYHDQGLPVLKYKGFGAAVN----VTLG--LPIIRTSVDHGTALDLA-GSGR-IDSGSLQVALETAYQMAAS
2 PsiBlast_PDB 80.3158% -30 - C1 - - 1YXO PDXA_PSEAE A:[7-326] -----LTPGEPAGIGPDLCL-LLARS---A---QPHPL--IA---IASRTLLQERAGQL-GLAI-DLKDVS-PAAWPER--P------A--KA--GQLYVWD------T--P-L-A-A--PVRP---GQLD-RANAAYVLETLTRAGQGCLDGHFAGMITAPVHK-GVINEAGIPFSGHTEFLADLTHTAQVVMMLATRGLRVALATTHLPLREVADAISDERLTRVARILHADL--RD--KFGIAHPRILVCGLNPHAGEGGHLGR-E-E-------IEVIEPCLER-----------------------LR----------------------G--------E--GLDLIGPLPADTLFTPKH----------LEHCDAVLAMYHDQGLPVLKYKGFGAAVN----VTLG--LPIIRTSVDHGTALDLA-GSGR-IDSGSLQVALETAYQMAAS
35 HHSearch 79.4755% -31 * C1 * - 3LXY PDXA_YERPE A:[8-331] NNRLVITPGEPAGVGPDLAI-T-LAQ---QD--WPVEL--VV---CADPALLLARASQL-NLPL-QLREYQ--AD---Q--PAI----AQ-QA--GSLTILP------V--K-T-A-V--NVVP---GKLD-VGNSHYVVETLAKACDGAISGEFAALVTGPVQK-SIINDAGIPFIGHTEFFADRSHCQRVVMMLATEELRVALATTHLPLLAVPGAITQASLHEVITILDNDL--KT--KFGITQPQIYVCGLNPHAGEGGHMGH-E-E-------IDTIIPALNT-----------------------LR----------------------Q--------Q--GINLIGPLPADTLFQPKY----------LQHADAVLAMYHDQGLPVLKYQGFGRAVN----ITLG--LPFIRTSVDHGTALELA-ATGT-ADVGSFITALNLAIKMINN
34 HHSearch 78.4557% -16 - C1 - - 1PTM - PDXA_ECOLI A:[4-327] TQRVVITPGEPAGIGPDLVV-Q-LAQ---RE--WPVEL--VV---CADATLLTNRAAML-GLPL-TLRPYSPNSP---A--Q------PQ-TA--GTLTLLP------V--A-L-R-A--PVTA---GQLA-VENGHYVVETLARACDGCLNGEFAALITGPVHK-GVINDAGIPFTGHTEFFEERSQAKKVVMMLATEELRVALATTHLPLRDIADAITPALLHEVIAILHHDL--RT--KFGIAEPRILVCGLNPHAGEGGHMGT-E-E-------IDTIIPVLNE-----------------------LR----------------------A--------Q--GMKLNGPLPADTLFQPKY----------LDNADAVLAMYHDQGLPVLKYQGFGRGVN----ITLG--LPFIRTSVDHGTALELA-GRGK-ADVGSFITALNLAIKMIVN
1 PsiBlast_PDB 78.2359% -37 - C1 - - 1PS6 PDXA_ECOLI A:[8-323] -----ITPGEPAGIGPDLVV-QLAQR--------EWPVELVV---CADATLLTNRAAML-GLPL-TLRPYS-PNS---P--A------Q--PQTAGTLTLLP------V--A-L-R-A--PVTA---GQLA-VENGHYVVETLARACDGCLNGEFAALITGPVHK-GVINDAGIPFTGHTEFFEERSQAKKVVMMLATEELRVALATTHLPLRDIADAITPALLHEVIAILHHDL--RT--KFGIAEPRILVCGLNPHAGEGGHMGT-E-E-------IDTIIPVLNE-----------------------LR----------------------A--------Q--GMKLNGPLPADTLFQPKY----------LDNADAVLAMYHDQGLPVLKYQGFGRGVN----ITLG--LPFIRTSVDHGTALELA-GRGK-ADVGSFITALNLAIKM---
3 PsiBlast_PDB 78.1456% -29 - C1 - - 3LXY PDXA_YERPE A:[11-328] ---LVITPGEPAGVGPDLAI-TLAQQ---D---WPVEL--VV---CADPALLLARASQL-NLPL-QLREYQ-ADQ---P--A------I--AQQAGSLTILP------V--K-T-A-V--NVVP---GKLD-VGNSHYVVETLAKACDGAISGEFAALVTGPVQK-SIINDAGIPFIGHTEFFADRSHCQRVVMMLATEELRVALATTHLPLLAVPGAITQASLHEVITILDNDL--KT--KFGITQPQIYVCGLNPHAGEGGHMGH-E-E-------IDTIIPALNT-----------------------LR----------------------Q--------Q--GINLIGPLPADTLFQPKY----------LQHADAVLAMYHDQGLPVLKYQGFGRAVN----ITLG--LPFIRTSVDHGTALELA-ATGT-ADVGSFITALNLAIKM---
5 PsiBlast_PDB 78.0358% -33 - C1 - - 1PTM - PDXA_ECOLI A:[9-323] -----ITPGEPAGIGPDLVV-QLAQR--------EWPVELVV---CADATLLTNRAAML-GLPL-TLRPYS-PNS---P--A------Q--PQTAGTLTLLP------V--A-L-R-A--PVTA---GQLA-VENGHYVVETLARACDGCLNGEFAALITGPVHK-GVINDAGIPFTGHTEFFEERSQAKKVVMMLATEELRVALATTHLPLRDIADAITPALLHEVIAILHHDL--RT--KFGIAEPRILVCGLNPHAGEGGHMGT-E-E-------IDTIIPVLNE-----------------------LR----------------------A--------Q--GMKLNGPLPADTLFQPKY----------LDNADAVLAMYHDQGLPVLKYQGFGRGVN----ITLG--LPFIRTSVDHGTALELA-GRGK-ADVGSFITALNLAIK----
20 PsiBlast_CBE 77.8659% -34 - C1 - - 1PS6 PDXA_ECOLI B:[8-323] -----ITPGEPAGIGPDLVV-QLAQR--------EWPVELVV---CADATLLTNRAAML-GLPL-TLRPYS-PNS---P--A------Q--PQTAGTLTLLP------V--A-L-R-A--PVTA---GQLA-VENGHYVVETLARACDGCLNGEFAALITGPVHK-GVINDAGIPFTGHTEFFEERSQAKKVVMMLATEELRVALATTHLPLRDIADAITPALLHEVIAILHHDL--RT--KFGIAEPRILVCGLNPHAGEGGHMGT-E-E-------IDTIIPVLNE-----------------------LR----------------------A--------Q--GMKLNGPLPADTLFQPKY----------LDNADAVLAMYHDQGLPVLKYQGFGRGVN----ITLG--LPFIRTSVDHGTALELA-GRGK-ADVGSFITALNLAIKM---
6 PsiBlast_PDB 77.4357% -25 - C1 - - 1R8K - PDXA_SALTY A:[9-322] -----ITPGEPAGSGPDLVV-QLAQR---A---WPIEL--VV---CADGALLTERAAML-GLPL-SLLPYS-PDV---P--A------A--PQPAGTLTLLP------V--S-L-R-A--PAIS---GQLT-VENGPYVVETLARACDGCLNGEFAALITGPVHK-GVINDAGISFTGHTEFFEERSQAKKVVMMLATEELRVALATTHLPLRAIADAITPALLHEVIAILHHDL--RT--KFGIAEPRILVCGLNPHAGEGGHMGT-E-E-------IDTIIPVLDE-----------------------LR----------------------A--------Q--GMKLNGPLPADTLFQPKY----------LDNADAVLAMYHDQGLPVLKYQGFGRGVN----ITLG--LPFIRTSVDHGTALELA-GRGK-ADVGSFITALNLAI-----
4 PsiBlast_PDB 76.7858% -25 - C1 - - 1PS7 - PDXA_ECOLI A:[9-323] -----ITPGEPAGIGPDLVV-QLAQR--------EWPVELVV---CADATLLTNRAAML-GLPL-TLRPYS-PNS---P--A------Q--PQTAGTLTLLP------V--A-L-R-A--PVTA---GQLA-VENGHYVVETLARACDGCLNGEFAALITGPVHK-GVINDAGIPFTGHTEFFEERSQAKKVVMMLATEELRVALATTHLPLRDIADAITPALLHEVIAILHHDL--RT--KFGIAEPRILVCGLNPHAGEGGHMGT-E-E-------IDTIIPVLNE-----------------------LR----------------------A--------Q--GMKLNGPLPADTLFQPKY----------LDNADAVLAMYHDQGLPVLKYQGFGRGVN----ITLG--LPFIRTSVDHGTALELA-GRGK-ADVGSFITALNLAIK----
40 HHSearch 61.3133% 8 - C1 - - 4JQP ? B:[15-340] LPVIGITMGDAAGVGAEVVV-KSLAH---ASVYAQCRP--LV---IGDAKRLERANQIV-GGEM-KIRRIE-DAS---E--AR-----Y--EQ--GTIDCID------L--G-LIP-D--DLPF---GQLS-AIAGDAAYQYIKRAVELAQSGKIDAICTAPLNK-EALHAGGHKYPGHTEMLAHLTGVDEVSMMLVAPQLRVIHVTTHIGIIDAIRKIEPGLVQRTIERGNATL--VK---AGIERPRIGVCGINPHAGENGLFGY-GEE-------EEKIIPAVTL-----------------------LQ----------------------E--------R--GLDVTGPLPADTLFFRAG----------RGDFDLVVAMYHDQGHGPVKVLGLEAGVN----VTVG--LEVIRTSVDHGTAFDIA-GKGV-VDEGSMLEALRQGAELAT-
36 HHSearch 59.3834% -4 - C- - - 2HI1 - PDXA2_SALTY B:[3-327] TKTVAITMGDPAGIGPEIIV-KALSE---DGL-NGAPL--VV---IGCLATLKRLQAKGITPNV-ELRAIE--RV---A--E------ARFAP--GIIHVID------EP-LAQ-P-E--ALEA---GKVQ-AQAGDLAYRCVKRATELALRGDVQAIATAPLNK-EALHLAGHNYPGHTELLATLTHSRDYAMVLYTDKLKVIHVSTHIALRKFLDTLSTARVETVIGIADTFL--KR---VGYVKPRIAVAGVNPHAG---LFGD-E-E-------TRILTPAITD-----------------------AR----------------------A--------K--GMDVYGPCPPDTVFLQAY----------EGQYDMVVAMYHDQGHIPLKLLGF-DGVN----ITAG--LPFIRTSADHGTAFDIA-WTGK-AKSESMAVSIKLAMQLA--
39 HHSearch 58.4829% -2 - C1 - - 3TSN PDXA_CAMJE C:[4-366] MKKLAISIGDINSIGLEILV-RSHEE---LS--KICTP--FY---FIHESLLNKALKLL-NLKLFNAKIVAFKDD---K--DYEFNFIK--KE--NSLEIYSFCLPLGFKVD-E-N-F--EIQA---GEID-AKSGLYGFLSFKAASYFVYEKHAHALLTLPIHK-KAWEDAGLKYKGHTDALRDFFK-KNAIMMLGCKELFVGLFSEHIPLAKVSKKITFKNLSIFLKDFYKE----------THFKKMGLLGFNPHAGDYGVIGG-E-E-------EKIMEKAIAF-----------------------VNAFLHSKKDEKFFKKALKDENLQKELLLNFKGK--GVYLPYPLVADTAFTKTG----------LKNCNRLVAMYHDLALAPLKALYFDKSIN----VSLN--LPIIRVSVDHGTAFDKA-YKNAKINTKSYFEAAKFAINLHSK
37 HHSearch 58.4834% 4 - C- - - 2HI1 - PDXA2_SALTY A:[3-327] TKTVAITMGDPAGIGPEIIV-KALSE---DGL-NGAPL--VV---IGCLATLKRLQAKGITPNV-ELRAIE--RV---A--E------ARFAP--GIIHVID------EP-LAQ-P-E--ALEA---GKVQ-AQAGDLAYRCVKRATELALRGDVQAIATAPLNK-EALHLAGHNYPGHTELLATLTHSRDYAMVLYTDKLKVIHVSTHIALRKFLDTLSTARVETVIGIADTFL--KR---VGYVKPRIAVAGVNPHAGENGLFGD-E-E-------TRILTPAITD-----------------------AR----------------------A--------K--GMDVYGPCPPDTVFLQAY----------EGQYDMVVAMYHDQGHIPLKLLG-YDGVN----ITAG--LPFIRTSADHGTAFDIA-WTGK-AKSESMAVSIKLAMQLA--
7 PsiBlast_PDB 57.7634% 9 - C- - - 2HI1 - PDXA2_SALTY A:[8-327] -----ITMGDPAGIGPEIIV-KALSEDG-L---NGAPL--VVIGCLATLKRLQAKGITP-NVEL-RAIERV-AEA---R--F------A---P--GIIHVID------E--P-L-A-QPEALEA---GKVQ-AQAGDLAYRCVKRATELALRGDVQAIATAPLNK-EALHLAGHNYPGHTELLATLTHSRDYAMVLYTDKLKVIHVSTHIALRKFLDTLSTARVETVIGIADTFL--K---RVGYVKPRIAVAGVNPHAGENGLFGD-E-E-------TRILTPAITD-----------------------AR----------------------A--------K--GMDVYGPCPPDTVFLQAY----------EGQYDMVVAMYHDQGHIPLKLLG-YDGVN----ITAG--LPFIRTSADHGTAFDIA-WTGK-AKSESMAVSIKLAMQLA--
8 PsiBlast_PDB 56.1936% 30 - C1 - - 4JQP - ? A:[20-328] -----ITMGDAAGVGAEVVVKSLAHASVYA---QCRPL--VI----GDAKRLERANQIV-GGEM-KIRRIE-DAS---E--A------R--YE---QGTIDC------I--D-L-G-L--IPDDLPFGQLS-AIAGDAAYQYIKRAVELAQSGKIDAICTAPLNK-EALHAGGHKYPGHTEMLAHLTGVDEVSMMLVAPQLRVIHVTTHI---GIIDAIRKIEPGLVQRTIERGN--ATLVKAGIERPRIGVCGINPHAGENGLFGYGE-E-------EEKIIPAVTL-----------------------LQ----------------------E--------R--GLDVTGPLPADTLFFRAG----------RGDFDLVVAMYHDQGHGPVKVLGLEAGVN----VTVG--LEVIRTSVDHGTAFDIA-GKGV-VDEGSM-------------
21 PsiBlast_CBE 55.8836% 29 - C1 - - 4JQP ? B:[20-328] -----ITMGDAAGVGAEVVVKSLAHASVYA---QCRPL--VI----GDAKRLERANQIV-GGEM-KIRRIE-DAS---E--A------R--YE---QGTIDC------I--D-L-G-L--IPDDLPFGQLS-AIAGDAAYQYIKRAVELAQSGKIDAICTAPLNK-EALHAGGHKYPGHTEMLAHLTGVDEVSMMLVAPQLRVIHVTTHI---GIIDAIRKIEPGLVQRTIERGN--ATLVKAGIERPRIGVCGINPHAGENGLFGYGE-E-------EEKIIPAVTL-----------------------LQ----------------------E--------R--GLDVTGPLPADTLFFRAG----------RGDFDLVVAMYHDQGHGPVKVLGLEAGVN----VTVG--LEVIRTSVDHGTAFDIA-GKGV-VDEGSM-------------
9 PsiBlast_PDB 54.0831% -68 - C1 - - 3TSN PDXA_CAMJE A:[102-363] -------------------------------------------------------------------------------------------------------------------------------GEID-AKSGLYGFLSFKAASYFVYEKHAHALLTLPIHK-KAWEDAGLKYKGHTDALRDFFK-KNAIMMLGCKELFVGLFSEHIPLAKVSKKITFKNL----SIFLKDFYKET--HFK----KMGLLGFNPHAGDYGVIGG-E-EEKIMEKAIAFVNAFLHSKKDEKFFKKALKDENLQKELLLNFK----------------------G--------K--GVYLPYPLVADTAFTKTG----------LKNCNRLVAMYHDLALAPLKALYFDKSIN----VSLN--LPIIRVSVDHGTAFDKAYKNAK-INTKSYFEAAKFAINL---
18 PsiBlast_PDB 36.9443%-129 - C2 - - 4E4R PTAS_STAAR A:[48-84] ----------------------------------------IV---LGDETKVQSLAQKL-NLDI-SNIELI-NPA---T--S------E--LK--AEL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
46 HHSearch 34.2714% 9 - C1 - - 1VMI EUTD_ECOLI A:[26-335] PARVVFPDAL----D-QRVL-KAAQY---LHQQGLATP--IL---VANPFELRQFALSH-GVAMDGLQVID-PH---------------------GNLAMREE-----F--A-H-RWL--A-RA---GEKTPPDALEKLTDPLMFAAAMVSAGKADVCIAGNLSSTANVLRAGLRIIGLQPGCK-TLS--SIFLMLPQYSGPALGFADC----SVVPQPTAAQLADIALASAETW--RA--ITG-EEPRVAMLSFSSN----GSARH-P-C-------VANVQQATEI-----------------------VR----------------------E--------RAPKLVVDGELQFDAAFVPEVAAQKAPASPLQGKANVMVFPSLEAGNIGYKIAQRLGGYRAVGPLIQGLAAPMHDLSRG--------------CSVQEIIELALVAAVPR--