@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VV82: (2017-12-22 )
MLFKKFAVAAAVAATLAFVGCSKKEEAPAAASEAVAAASEATAAAAAASEAAAAAASEAAVAVDAAASETAAASEAAAAH
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------......-...-10......---..20........30---.-........40....-....50........60........70........80----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
L
F
K
K
F
-
A
V
A
-
A
A
V
A
A
T
L
A
---
F
VGCSKKEEAPA
A
----
A
-
S
E
A
V
A
AASE
A
T
A
A
A
-AA
A
S
E
A
A
A
AAASE
A
A
V
A
V
DAAASETAAASEAAAAH-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
75.43
31%
-64
- C6 -
-
5NZT
-
?
G:
[264-380]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
M
-
V
V
Y
-
E
A
A
S
A
I
V
N
---
L
P
G
C
S
A
K
E
L
A
P
A
V
----
S
-
V
L
Q
L
F
C
S
S
P
K
A
A
L
R
-
Y
A
A
V
R
T
L
N
K
V
A
M
K
H
P
S
A
V
T
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
75.19
31%
-64
- C6 -
-
5NZU
-
?
G:
[264-380]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
M
-
V
V
Y
-
E
A
A
S
A
I
V
N
---
L
P
G
C
S
A
K
E
L
A
P
A
V
----
S
-
V
L
Q
L
F
C
S
S
P
K
A
A
L
R
-
Y
A
A
V
R
T
L
N
K
V
A
M
K
H
P
S
A
V
T
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
75.11
31%
-64
- C6 -
-
5NZS
-
?
G:
[264-380]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
M
-
V
V
Y
-
E
A
A
S
A
I
V
N
---
L
P
G
C
S
A
K
E
L
A
P
A
V
----
S
-
V
L
Q
L
F
C
S
S
P
K
A
A
L
R
-
Y
A
A
V
R
T
L
N
K
V
A
M
K
H
P
S
A
V
T
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
75.11
31%
-64
- C6 -
-
5NZR
-
?
G:
[264-380]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
M
-
V
V
Y
-
E
A
A
S
A
I
V
N
---
L
P
G
C
S
A
K
E
L
A
P
A
V
----
S
-
V
L
Q
L
F
C
S
S
P
K
A
A
L
R
-
Y
A
A
V
R
T
L
N
K
V
A
M
K
H
P
S
A
V
T
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
74.08
31%
-66
- C6 -
-
5NZV
-
?
G:
[264-380]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
M
-
V
V
Y
-
E
A
A
S
A
I
V
N
---
L
P
G
C
S
A
K
E
L
A
P
A
V
----
S
-
V
L
Q
L
F
C
S
S
P
K
A
A
L
R
-
Y
A
A
V
R
T
L
N
K
V
A
M
K
H
P
S
A
V
T
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
71.55
31%
-26
- C6 -
-
5A1V
-
COPG1_MOUSE
E:
[264-354]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
M
-
V
V
Y
-
E
A
A
S
A
I
V
N
---
L
P
G
C
S
A
K
E
L
A
P
A
V
----
S
-
V
L
Q
L
F
C
S
S
P
K
A
A
L
R
-
Y
A
A
V
R
T
L
N
K
V
A
M
K
H
P
S
A
V
T
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
71.00
31%
-26
- C6 -
-
5A1U
-
COPG1_MOUSE
E:
[264-354]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
M
-
V
V
Y
-
E
A
A
S
A
I
V
N
---
L
P
G
C
S
A
K
E
L
A
P
A
V
----
S
-
V
L
Q
L
F
C
S
S
P
K
A
A
L
R
-
Y
A
A
V
R
T
L
N
K
V
A
M
K
H
P
S
A
V
T
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
70.64
31%
-26
- C6 -
-
5A1X
-
COPG1_MOUSE
E:
[264-324]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
M
-
V
V
Y
-
E
A
A
S
A
I
V
N
---
L
P
G
C
S
A
K
E
L
A
P
A
V
----
S
-
V
L
Q
L
F
C
S
S
P
K
A
A
L
R
-
Y
A
A
V
R
T
L
N
K
V
A
M
K
H
P
S
A
V
T
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
70.60
31%
-26
- C6 -
-
5A1Y
-
COPG1_MOUSE
E:
[264-354]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
M
-
V
V
Y
-
E
A
A
S
A
I
V
N
---
L
P
G
C
S
A
K
E
L
A
P
A
V
----
S
-
V
L
Q
L
F
C
S
S
P
K
A
A
L
R
-
Y
A
A
V
R
T
L
N
K
V
A
M
K
H
P
S
A
V
T
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
70.17
31%
-26
- C6 -
-
5A1W
-
COPG1_MOUSE
E:
[264-324]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
M
-
V
V
Y
-
E
A
A
S
A
I
V
N
---
L
P
G
C
S
A
K
E
L
A
P
A
V
----
S
-
V
L
Q
L
F
C
S
S
P
K
A
A
L
R
-
Y
A
A
V
R
T
L
N
K
V
A
M
K
H
P
S
A
V
T
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
131
Fugue
65.60
14%
-85
- C6 -
-
4JQU
2
B:
[1-54]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
L
D
K
F
-
H
V
---------------------------------
D
L
N
E
D
M
S
N
L
S
F
K
D
-
L
D
I
E
E
R
K
R
L
L
V
W
Q
A
R
K
N
L
E
T
K
L
Q
S
D
K
D
L
Q
S
L
L
T
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
135
Fugue
61.56
17%
17
- C5 -
-
4XFV
-
ELP2_YEAST
A:
[3-786]
E
C
I
T
P
E
A
I
F
I
G
A
N
KQTQV
S
D
I
H
KVKK
I
V
A
F
G
A
GK
T
I
A
L
W
D
PIEPNNKGVY
A
T
L
K
GHEAEVT
C
V
R
F
VPDSD
F
M
V
S
A
S
EDH
H
V
K
I
W
K
FTDYS
H
L
Q
C
IQTIQHYSKTIV
A
L
S
A
L
PS
L
I
S
V
G
C
ADG
T
I
S
I
W
R
Q
N
IQNDEFGLA
H
E
F
T
IKFFYPL
C
L
S
L
S
K
VEEK
K
Y
L
L
A
I
G
G
TNV
N
V
F
I
A
S
F
I
L
S
DSGIEKCRVV
A
E
L
E
GHEDWVK
S
L
A
F
R
H
Q
ETPGD
Y
L
L
C
S
G
S
QDR
Y
I
R
L
W
R
I
R
I
NDLILSNKQYKFQIDDE
L
R
V
G
I
N
F
E
ALIMGHD
D
W
I
S
S
L
Q
W
H
ESRL
Q
L
L
A
A
T
ADT
S
L
M
V
W
E
P
DSG
I
W
V
C
S
L
R
L
G
EFW
S
C
L
W
F
T
H
ER
M
D
F
F
L
T
N
G
KTG
S
W
R
M
W
A
TCDQ
R
L
G
I
S
G
A
TKDVT
D
I
A
W
SPSGE
Y
L
L
A
T
S
LDQ
T
T
R
L
F
A
P
W
IYDASGRKREIATWHEFSRPQIHGYDMI
C
V
E
T
VTDT
R
F
V
S
G
G
DE
K
I
L
R
S
F
-
D
L
P
-
K
G
V
A
G
M
L
Q
K
--
F
V
G
I
Q
F
E
E
E
C
P
P
M
----
E
--------
D
Q
L
Q
R
H
L
-
L
W
P
E
V
E
K
L
Y
G
H
G
F
E
I
T
C
L
D
I
S
P
D
Q
K
L
I
A
S
A
C
R
S
N
N
VQNA
V
I
R
I
F
S
TENWLEIKP
A
L
P
F
H
SLTIT
R
L
K
F
S
KDGK
F
L
L
S
V
C
RDR
K
W
A
L
W
E
R
NMEDN
T
F
E
L
R
F
KNEKPHTRIIW
D
A
D
W
A
P
LEFGN
V
F
V
T
A
S
RDK
T
V
K
V
W
R
H
Q
KEP
A
D
D
Y
V
L
E
A
S
I
K
H
TKAVT
A
I
S
I
H
DSMIRE
K
I
L
I
S
V
G
L
ENG
E
I
Y
L
Y
S
Y
T
LG
K
F
E
L
ITQLNEDITPADKIT
R
L
R
W
S
HLKRNG
K
L
F
L
G
V
G
S
SDL
S
T
R
I
Y
S
L
A----------------------------------
134
Fugue
59.29
25%
-5
* C6 *
-
2N90
-
NTRK1_HUMAN
A:
[1-39]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
K
D
E
T
P
F
G
----
V
-
S
V
A
V
G
L
A
V
F
A
C
L
F
L
-
S
T
L
L
L
V
L
N
K
A
G
R
R
N
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
133
Fugue
58.66
10%
45
- C6 -
-
3PMI
1
MUM1_HUMAN
A:
[4-125]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SFEVG
M
L
V
W
H
K
H
K
KY
P
F
W
P
A
V
V
KSVRQRDK
K
A
S
V
L
Y
I
E
G
H
M
N
P
K
M
K
G
F
T
V
S
L
K
SLK
H
F
D
C
K
E
K
Q
T
L
L
N
Q
----
A
-
R
E
D
F
N
Q
D
I
G
W
C
V
S
L
-
I
T
D
Y
R
V
R
L
G
C
G
S
F
A
G
S
F
L
E
Y
Y
A
A
D
I
S
Y
P
V
R
K
S
I
Q
Q
D
V
L--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
129
Fugue
57.55
18%
-22
- C6 -
-
2N2U
-
?
A:
[1-77]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
D
L
K
I
-
D
V
S
-
D
--
D
E
E
A
E
---
K
I
I
R
E
I
R
E
Q
W
P
K
A
----
T
-
V
T
R
T
N
--
G
D
I
K
L
D
A
-
Q
T
E
K
E
A
E
K
M
E
K
A
V
K
K
V
K
P
N
A
T
I
R
K
T
G
G
S
L
E
H
H
H
H
H
H----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
137
Fugue
55.11
14%
47
- C6 -
-
5U0P
-
YE44_SCHPO
I:
[47-121]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
-
L
L
R
-
Q
G
I
R
Q
L
K
E
---
K
V
S
K
M
E
P
E
E
M
T
V
K
----
E
-
K
K
S
I
I
E
I
L
K
A
R
I
A
L
-
K
K
A
F
L
K
M
A
L
S
E
S
N
D
T
V
V
K
K
E
D
V
R
E
S
P
V
D
T
F
M
E
N
A
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
138
Fugue
38.87
7%
96
- C4 -
-
2AQW
-
?
A:
[2-322]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
F
K
T
K
L
-
K
N
R
-
R
S
E
V
N
T
C
L
---
C
I
G
L
D
P
D
E
D
D
I
K
N
----
F
M
K
N
E
E
Q
N
G
Y
K
N
I
K
N
N
M
N
S
N
N
N
G
I
E
N
I
I
K
I
G
K
E
I
L
L
T
D
G
E
N
I
Q
N
L
S
E
E
D
K
F
F
Y
F
F
N
H
F
C
F
Y
I
I
N
N
TKEYAL
V
Y
K
M
N
F
A
F
Y
I
P
YG
S
V
G
I
N
A
L
K
N
V
F
D
Y
L
N
S
M
N
I
P
T
M
L
DMK
I
N
D
I
GNTV
K
N
Y
R
K
F
I
FEYLKSD
S
C
T
I
N
VYMGT
N
M
L
K
D
I
CFDYEKN
K
Y
Y
S
A
Y
V
LIKTTNKDSFIFQNELSINDKQ
A
Y
I
V
M
A
D
E
T
Q
K
M
A
T
E
L
KIEQNN
E
F
I
G
F
V
V
G
SNA
F
E
E
M
K
I
I
R
N
K
F
P
D
S
Y
I
L
S
P
GIGAQNGD
L
Y
K
T
L
K
N
G
YNKDYEK
L
L
I
N
V
G
R
A
I
T
K
SPD
P
K
K
S
S
E
S
Y
Y
N
Q
I
I
Q
I
F
K
D
128
HHSearch
31.38
0%
-23
- C7 -
-
2NC8
-
A:
[14-26]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
N
L
Y
F
---
Q
G
H
M
L
R
V
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
130
Fugue
27.15
9%
34
- C2 -
-
2N8B
-
?
A:
[1-36]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
C
-
I
L
N
-
G
R
T
D
L
G
T
L
---
L
F
R
C
R
R
D
S
D
C
P
G
A
CICR
G
-
N
G
Y
C
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
113
HHSearch
18.03
9%
-
- C1 -
-
4R4G
-
YCDA_BACSU
A:
[134-144]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
K
I
---
L
A
T
A
D
K
L
Q
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------