@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VVA8: (2017-12-23 )
MKDFLFLFAFLLAIGKPVTSHADTTYETFDVHFVILTSNPSAQLVATLNQMQEEVNILNNYFVKEDRSPVVKFRFKSVSFYNDVKNSTCSFVSTVNSATPYDSDGWATLFNSCNDPKVRDKNALNFYVYDGYSEANGFNEADSHGKRNSNRPYVMLDWQRINHNTQSPEVHEMGHAFGLEHVCAPGATYNTSTNIMTTVCTGSSGGKRDIGFNAAQVNTIMYYVPLIKAKLSKL
Atome Classification :
(20 SA)
-----------------....------.....10--------.........20........30.----.--......40........50-.....----....60...------------------..----...70...---....------..80----........90-----........100--.........110.-......120---.....------....130----...-----...--..140.......150-------------..--....-----------..160------..-.......--------170.........-180-----....------....190---.----.......-.200.-------...-------------..---.210--------------------------------.....--------...220...--....230...------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-----------------M
K
D
F
------
L
F
L
F
A
F
---------
L
L
AIGKPVTSHADT
T
Y
E
T
F
D
V
H
----
F
--
V
I
L
TSNP
S
A
Q
L
V
A
T
L
N
Q
--
M
Q
E
E
V
----
N
I
L
N
N
Y
FVK------------------ED----RS
P
V
-
V
K
F
---
R
F
KS------
V
S
F
Y
----
N
DVKNS
T
C
S
F
-----
V
S
TVNSATP----YDSD
G
W
A
T
L
F
NSC-NDPKVRD-----KN
A
L
N
------
F
Y
V
YDG-----YSE-----ANG--FNEADSHGKRNSNR--------------
P
Y
--
V
M
L
D
-----------
W
Q
R--------IN-HNTQS
P
E
--------
V
--
H
E
M
G
H
A
FGL-EH------VCAP------GATYN-----T----ST
N
I
M
T
T
-
V
C
TGS-------SGG-------------KR---DI-G--------------------------------FN
A
A
Q
--------
V
N
T
I
M
Y
Y
V
P
--
L
I
K
A
K
-
L
SKL------------
26
Fugue
58.92
14%
14
- C4 -
-
3LUM
3
ULIL_METAC
A:
[1-262]
------------------------------------------------------
R
M
E
I
V
K
I
P
V
V
----
V
--
H
V
V
W
N
E
E
E
E
N
I
--
S
D
A
Q
--
I
Q
S
Q
I
----
D
I
L
N
K
D
F
R
K
------------------
L
N
----
S
D
V
S
Q
V
P
S
---
V
W
S
N
LIADLG
I
E
F
F
LATK
D
P
N
G
N
Q
T
T
G
I
-----
T
R
T
Q
T
S
V
T
F
----
F
T
T
S
D
E
V
K
F
A
S
S
G
-
G
E
D
A
W
P
A
-----
D
R
Y
L
N
------
I
W
V
C
H
V
-----
L
K
S
-----
E
I
G
--
Q
D
I
L
G
Y
A
Q
F
P
G
G
P
A
--------------
E
T
D
G
V
V
I
V
-----------
D
A
A
--------
F
G
-
T
T
G
T
A
L
P
PFDKG
R
T
A
T
--
H
E
I
G
H
W
L
N
L
-
Y
H
------
I
W
G
D
------
E
L
R
F
E
-----
D
----
P
C
S
R
S
D
E
-
V
D
D
T
P
-------
N
Q
A
-------------
D
P
---
N
F
-
G
CPSYPHVSCSNGPNGDMFMNYLDYVDDKC
M
V
M
F
T
Q
G
Q
--------
A
T
R
V
N
A
C
L
D
--
G
P
R
S
S
-
F
L
A
-------------
33
Fugue
51.48
22%
-12
- C2 -
-
4RHJ
1
?
A:
[19-318]
SHMF
S
K
F
L
M
N
V
K
G
VTPR
G
S
D
W
ANRLGP
V
A
L
F
G
Y
G
A
GMPRRAP
L
L
D
F
F
L
Q
S
P
R
D
C
D
H
-
Y
A
E
L
T
I
H
DKGP
I
--
E
C
P
P
E
T
V
M
F
M
P
V
L
N
C
G
Q
--
M
L
D
E
A
AGTE
T
P
T
S
D
E
W
Y
L
------------------
G
S
----
L
E
A
S
-
T
E
L
L
E
K
G
Y
V
P
------
V
S
V
G
----
G
D
-
G
S
A
T
L
S
M
-----
V
E
A
Y
K
R
L
F
P
------
S
D
D
I
V
I
V
H
F
S
A
-
R
-
P
S
V
S
D
P----
R
S
P
L
R
------
V
L
L
D
K
G
LLK
G
V
V
S
V
-----
G
N
R
--
Q
V
S
S
E
D
R
K
V
R
K
L
H
K
--------------
M
F
--
Y
M
-
D
-----------
M
R
D
--------
I
R
-
N
D
Y
P
-----------
V
--
F
I
S
I
D
A
S
V
L
-
D
P
------
A
F
A
P
------
A
V
D
S
P
-----
V
AGGL
S
T
R
D
L
L
H
-
I
M
N
G
I
-------
R
G
P
-------------
K
V
V
G
I
D
V
Y
G
--------------------------------
Y
N
P
D
L
D
V
Y
R
KDNV
G
L
T
A
I
A
L
S
K
--
I
I
K
E
G
-
I
L
K
-------------
35
HHSearch
51.32
17%
17
- C4 -
-
3LUM
2
ULIL_METAC
D:
[3-261]
--------------------------------------------------------
E
I
V
K
I
P
V
V
----
V
HV
V
W
N
E
E
---
E
E
-
N
I
S
D
A
Q
--
I
Q
S
Q
I
----
D
I
L
N
K
D
F
R
K
LNSDVSQVPSVWSNLIAD
L
G
---------
I
E
F
---
F
L
A
T
------
K
-
D
P
----
N
G
--
N
Q
T
T
G
I
-----
T
R
T
Q
T
S
V
T
F
----
F
T
T
-----
S
D
E
V
K
-
F
A
S
S
G
G
E
DAWPA
D
R
Y
L
N
------
I
W
V
C
H
V
-----
L
K
S
EIGQD
I
L
G
--
Y
A
Q
F
P
G
G
P
A
---
E
T
--------------
D
G
--
V
V
I
V
-----------
D
A
A
FGTTGTAL
P
P
-
F
D
K
G
R
T
A
--------
T
--
H
E
I
G
H
W
L
N
L
-
Y
H
------
I
W
G
D
ELRFED
P
C
S
R
S
DEVDD
T
----
P
N
Q
A
D
P
N
F
G
C
P
S
Y
PHVSCSN
G
P
N
GDMFMNYLDYVDD
K
C
---
M
V
-
M
--------------------------------
F
T
Q
G
Q
--------
A
T
R
V
N
A
C
L
D
--
G
P
R
S
S
-
F
L
--------------
34
Fugue
43.57
17%
-5
- C1 -
-
3R6O
-
?
A:
[22-323]
-----------------
M
N
L
R
------
I
V
S
F
A
W
--------------
Q
P
G
V
L
I
D
D
D
T
V
A
P
L
A
P
M
----
S
--
A
R
E
L
I
A
L
L
P
Q
I
S
P
L
I
S
D
E
L
V
P
L
D
S
----
V
A
L
G
A
P
I
P
E
------------------
P
G
----
Q
V
I
A
-
L
G
F
---
N
Y
P
T
------
H
D
P
V
----
V
F
M
K
S
P
T
S
I
S
GPR
D
A
V
I
A
P
R
T
S
H
A
----
L
D
Y
E
I
E
I
A
V
V
I
G
K
-
P
G
Y
R
I
E
R
-----
S
Q
A
I
K
------
H
V
A
--
G
-----
Y
M
L
-----
A
N
D
--
I
T
A
R
D
V
A
L
P
F
G
Q
A
Q
V
V
R
G
K
G
YPTF
C
P
T
G
P
W
--
L
F
T
T
GSDT
T
F
E
T
F
D
F
E
L
R
--------
I
N
G
E
L
R
Q
S
G
S
--------
T
--
V
D
M
--
T
L
G
F
-
A
E
------
V
V
E
T
------
V
S
A
-
T
-----
I
----
A
L
R
A
G
D
I
-
I
L
T
G
T
-------
P
G
G
-------------
C
------------------------------------------
G
F
Q
--------
F
D
P
P
R
Y
L
R
P
G
D
V
I
E
A
H
-
S
A
K
L
G
K
M
R
L
P
V
H
D
E
K
P
31
Fugue
40.14
14%
49
- C4 -
-
1SLM
-
?
?:
[16-250]
----------------L
V
Q
K
Y
------
L
E
N
Y
Y
D
---------
L
K
K
D
S
G
P
V
V
K
K
I
R
E
M
Q
K
F
L
G
L
E
---------
V
T
G
K
L
D
S
D
T
L
E
V
M
R
K
--
P
R
C
G
V
----
P
D
V
G
H
F
R
T
F
------------------
P
G
IPKW
R
K
T
H
-
L
T
Y
---
R
I
V
N
------
Y
T
P
D
LP
K
-
D
A
V
D
S
A
V
E
K
A
-----
L
K
V
W
E
E
V
T
P
L
T
F
S
R
L
Y
E
G
E
A
D
I
M
I
S
F
-
A
V
R
E
H
G
D
-----
F
Y
P
F
D
G
PGNVL
A
H
A
Y
A
P
-----
G
P
G
-----
I
N
G
--
D
A
H
F
D
D
D
E
Q
W
T
K
D
T
--------------
T
------------------------------
G
-
T
N
L
F
L
V
A
--------
A
--
H
E
I
G
H
S
L
G
L
-
F
H
------
S
A
N
T
------
E
A
L
M
Y
-----
P
----
L
Y
H
---------
S
-------
L
T
D
-------------
L
T
---
R
F
-
R
--------------------------------
L
S
Q
D
D
--------
I
N
G
I
Q
S
L
Y
G
--
P
P
P
-------------------
7
PsiBlast_PDB
38.63
66%
-128
- C4 -
-
1HOV
1
MMP2_HUMAN
A:
[119-136]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
--
H
E
F
G
H
A
M
G
L
-
E
H
------
S
Q
D
P
------
G
A
----------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
37.35
31%
-0
- C4 -
-
4HX3
-
SNPA_STRCS
A:
[24-100]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
Q
I
W
N
S
S
V
R
N
V
Q
L
R
A
-----
G
G
N
A
D
------
F
S
Y
Y
E
G
-----
N
D
S
-----
R
G
S
--
Y
A
Q
T
D
G
H
G
-----
R
--------------
G
Y
--
I
F
L
D
-----------
Y
Q
Q
---------
N
-
Q
Q
Y
D
S
T
R
--------
V
T
A
H
E
T
G
H
V
L
G
L
P
D
H
------
Y
Q
G
P
------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
37.18
11%
-46
- C4 -
-
2X7M
-
AMZA_METKA
A:
[14-193]
--------------------------------------------------
L
V
P
R
G
S
H
M
K
L
C
L
V
A
----
F
--
D
G
R
I
P
M
L
S
S
I
V
D
R
F
E
E
H
--
V
S
E
Y
L
----
G
E
V
K
V
K
K
K
R
------------------
A
K
----
L
P
E
H
-
A
-----------------------
Y
S
K
V
R
G
Q
Y
L
A
-----
R
A
L
L
D
T
L
R
G
----
M
K
G
E
Y
D
R
V
L
G
L
T
S
-
E
D
L
Y
A
P
G
-----
L
N
F
V
------------------
F
G
Q
-----
A
R
C
--
P
G
R
E
A
V
V
S
V
A
R
L
L
D
--------------
P
------
D
-----------
P
E
L
--------
Y
L
-
E
R
V
V
K
E
L
--------
T
--
H
E
L
G
H
T
F
G
L
-
G
H
------
C
P
D
R
------
N
C
V
M
S
-----
F
----
S
S
S
L
L
E
V
-
D
R
K
S
P
----------------------------------------------------------------------------------
N
F
C
R
--
R
C
T
E
L
-
L
Q
R
N
L
KR---------
2
PsiBlast_PDB
37.07
31%
-4
- C4 -
-
1KUH
-
SNPA_STRCS
A:
[22-98]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
Q
I
W
N
S
S
V
R
N
V
Q
L
R
A
-----
G
G
N
A
D
------
F
S
Y
Y
E
G
-----
N
D
S
-----
R
G
S
--
Y
A
Q
T
D
G
H
G
-----
R
--------------
G
Y
--
I
F
L
D
-----------
Y
Q
Q
---------
N
-
Q
Q
Y
D
S
T
R
--------
V
T
A
H
E
T
G
H
V
L
G
L
P
D
H
------
Y
Q
G
P
------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
36.46
55%
-84
- C4 -
-
2OY2
-
MMP8_HUMAN
A:
[112-129]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
--
H
E
F
G
H
S
L
G
L
-
A
H
------
S
S
D
P
------
G
A
----------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
36.29
31%
-9
- C4 -
-
1C7K
-
SNPA_STRCS
A:
[22-98]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
Q
I
W
N
S
S
V
R
N
V
Q
L
R
A
-----
G
G
N
A
D
------
F
S
Y
Y
E
G
-----
N
D
S
-----
R
G
S
--
Y
A
Q
T
D
G
H
G
-----
R
--------------
G
Y
--
I
F
L
D
-----------
Y
Q
Q
---------
N
-
Q
Q
Y
D
S
T
R
--------
V
T
A
H
E
T
G
H
V
L
G
L
P
D
H
------
Y
Q
G
P
------------------------------------------------------------------------------------------------------------------------------------------------
48
HHSearch
36.19
19%
-111
- C4 -
-
1HY7
-
MMP3_HUMAN
A:
[112-168]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
L
F
L
V
A
--------
A
--
H
E
I
G
H
S
L
G
L
-
F
H
------
S
A
N
T
----------------------
E
A
L
M
Y
P
-
L
---------------------------
L
T
---
R
F
-
R
--------------------------------
L
S
Q
D
D
--------
I
N
G
I
Q
S
L
Y
G
--
P
P
P
-------------------
29
Fugue
36.11
8%
-95
- C4 -
-
2AVX
1
SDIA_ECOLI
A:
[1-171]
--------------------------------------------------
M
S
D
K
D
F
F
S
W
R
R
T
M
L
----
L
--
R
F
Q
R
M
E
T
A
E
E
V
Y
H
E
I
E
L
--
Q
A
Q
Q
L
----
E
Y
D
Y
Y
S
L
C
V
------------------
R
H
----
P
V
P
F
-
T
R
P
---
K
V
A
F
------
Y
T
N
Y
----------------------------------
P
E
A
W
V
S
Y
Y
Q
A
---------------------------------------------
K
N
--
F
L
A
I
D
P
V
L
N
P
E
N
F
S
--------------
Q
G
--
H
L
M
------------
W
N
D
---------
D
-
L
F
S
E
A
Q
P
--------
L
--
W
E
A
A
R
A
H
G
L
R
R
G
------
V
T
Q
Y
------
L
M
L
P
E
-----
R
----
A
L
G
F
L
S
F
-
S
R
C
S
A
-------
R
E
I
-------------
P
I
---
L
S
-
D
--------------------------------
E
L
Q
L
K
--------
M
Q
L
L
V
R
E
S
L
--
M
A
L
M
R
-
L
N
D
E
------------
37
HHSearch
35.01
25%
-94
* C4 *
-
1L6J
-
MMP9_HUMAN
A:
[374-425]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
S
L
F
L
V
A
--------
A
--
H
E
F
G
H
A
L
G
L
-
D
H
------
S
S
V
P
----------------------
E
A
L
M
Y
P
-
M
Y
R
F
------------------------
T
E
---
G
P
-
P
--------------------------------
L
H
K
D
D
--------
V
N
G
I
R
H
L
Y
G
------------------------
40
HHSearch
34.79
25%
-89
- C4 -
-
1OS2
-
MMP12_HUMAN
E:
[108-164]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
L
F
L
T
A
--------
V
--
H
E
I
G
H
S
L
G
L
-
G
H
------
S
S
D
P
----------------------
K
A
V
M
F
P
-
T
Y
K
Y
V
-------
D
---------------
I
N
---
T
F
-
R
--------------------------------
L
S
A
D
D
--------
I
R
G
I
Q
S
L
Y
G
--
D
P
K
E
------------------
41
HHSearch
34.62
26%
-100
- C4 -
-
5B5O
1
MMP13_HUMAN
A:
[113-169]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
L
F
L
V
A
--------
A
--
H
E
F
G
H
S
L
G
L
-
D
H
------
S
K
D
P
----------------------
G
A
L
M
F
P
-
I
Y
T
Y
---------
T
G
-------------------
F
-
M
--------------------------------
L
P
D
D
D
--------
V
Q
G
I
Q
S
L
Y
G
--
P
G
D
E
------------------
20
PsiBlast_PDB
34.47
55%
-58
- C4 -
-
1A85
1
MMP8_HUMAN
A:
[112-129]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
--
H
E
F
G
H
S
L
G
L
-
A
H
------
S
S
D
P
------
G
A
----------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
34.15
55%
-76
- C4 -
-
1JH1
1
MMP8_HUMAN
A:
[112-129]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
--
H
E
F
G
H
S
L
G
L
-
A
H
------
S
S
D
P
------
G
A
----------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
34.00
13%
33
- C4 -
-
1BKC
1
ADA17_HUMAN
A:
[1-255]
------DPMKN
T
C
K
L
L
V
V
A
D
H
------
R
F
Y
R
Y
M
---------
G
R
G
E
E
S
T
T
T
N
Y
L
I
E
L
I
D
R
V
D
D
I
----
Y
--
R
N
T
A
W
D
N
A
G
F
K
G
Y
G
I
Q
I
--
E
Q
I
R
I
----
L
K
S
P
Q
E
-
V
K
------------------
P
G
----
E
K
H
Y
-
N
M
A
---
K
S
Y
P
------
N
E
E
K
----
D
A
W
D
V
K
M
L
L
E
-----
Q
F
S
F
D
I
A
E
E
----
A
S
K
V
C
L
A
H
L
F
T
Y
Q
-
D
---
F
D
M
-----
G
T
L
G
L
------
A
Y
V
G
S
P
-----
R
A
N
-----
S
H
G
GV
C
P
K
A
Y
Y
S
P
V
G
K
K
N
I
--------------
Y
L
--
N
S
G
L
-----------
T
S
T
--------
K
N
-
Y
G
K
T
I
L
T
K
E
A
D
L
V
T
-
T
--
H
E
L
G
H
N
F
G
A
-
E
H
D
P
D
GLA
E
C
A
P
------
N
E
D
Q
G
-----
G
----
K
Y
V
M
Y
P
I
-
A
V
S
G
D
-------
H
---------------
E
N
---
N
K
-
M
--------------------------------
F
S
Q
C
S
--------
K
Q
S
I
Y
K
T
I
E
--
S
K
A
Q
E
C
F
Q
E
R
------------
25
PsiBlast_CBE
33.95
31%
1
- C4 -
-
4HX3
1
SNPA_STRCS
C:
[24-100]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
Q
I
W
N
S
S
V
R
N
V
Q
L
R
A
-----
G
G
N
A
D
------
F
S
Y
Y
E
G
-----
N
D
S
-----
R
G
S
--
Y
A
Q
T
D
G
H
G
-----
R
--------------
G
Y
--
I
F
L
D
-----------
Y
Q
Q
---------
N
-
Q
Q
Y
D
S
T
R
--------
V
TA
H
E
T
G
H
V
L
G
L
P
D
H
------
Y
Q
G
P
------------------------------------------------------------------------------------------------------------------------------------------------