@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VVB8: (2017-12-23 )
MAGGSQVIINKNGITFITPAKFEAKAGQHLFKSGTEVGVNIKGLPTYEAYNEKFQMLLPSGEPFKNADYKISNASDEFMAIADNKGRSKRINSLQEESLKLDLNWMKLEAEPSEGDD
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20----.---.......30..--......------40.---.......50....---------....60.-.......70.-.......80......--------------..------------90........100...-....-110.....--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAGG
S
Q
V
I
I
NKN
G
I
T
F
ITPAK----F---E
A
K
A
G
Q
H
L
F
KS--G
T
E
V
G
V
------
N
I
K---GLP
T
Y
E
A
Y
N
E
K
F
Q
---------MLLPSGE-PFKNA
D
Y
K
IS-NASD
E
F
M
A
IADNKG
R
--------------
S
K
------------
R
I
N
S
L
Q
E
E
S
L
K
L
D
L
N
W
-
M
K
L
E-AEPSEGDD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
63.80
24%
79
- C6 -
-
2YN5
-
?
A:
[1-283]
-------------------------------------------------------------------------------TPP
N
A
P
V
V
T
Y
S
D
I
V
ND
L
I
I
M
Q
G
T
A
EAK
S
Q
L
I
I
T
D
SEG
N
T
Y
T
L
T
V
P
DNG
K
W
S
M
A
I
P
YPSEG
K
F
T
I
T
S
V
D
AIGNR
S
D
D
V
P
L
D
I
M
K
E
V
P
V
I
S
L
S
P
D
S
D
S
G
T
V
G
D
N
I
T
R
D
K
Q
P
T
----
F
---
I
I
G
---
N
L
E
S
D
--
V
V
V
V
Q
V
------
D
I
N
---
G
T
V
Y
N
A
E
K
N
A
D
G
V
---------
W
F
F
T
P
G
T
-
P
L
A
D
G
S
Y
T
I
S
V
I
A
S
D
A
---------
A
--------------
G
N
------------
Q
K
N
S
L
P
-
I
T
V
T
I
D
S
T
L
-
T
V
P
E
-
I
A
L
A
A
G
E
D
NGASDSDNVTNHTQ
P
K
F
T
L
Q
HIDADVT
G
V
T
V
N
V
T
H
NG
V
T
D
I
Y
Q
A
T
Q
G
AD
G
W
T
F
T
PP
A
A
W
N
D
G
N
Y
T
L
S
V
T
V
V
D
RAG
N
S
Q
Q
S
A
S
L
A
V
T
V
D
S---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
63.57
25%
-17
- C6 -
-
2MHD
-
?
A:
[1-110]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
D
E
D
D
K
V
E
I
P
Q
L
V
G
K
W
I
V
K
---------------
E
P
V
L
Q
D
--
D
F
V
T
C
Y
------
T
F
N
---
A
D
K
T
Y
E
V
Y
T
G
S
------------
P
L
S
N
G
V
-
P
F
R
-
G
T
Y
I
I
S
-
L
-
D
E
K
L
I
K
L
Y
D
K
E
E
H
------------------------------
C
T
E
Q
Y
H
I
L
K
L
T
S
K
E
-
M
K
W
E
N
A
S
P
K
D
G
N
S
D
K
R
L
EKYND-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
56.07
22%
50
- C4 -
-
4TJV
-
VSR1_ARATH
A:
[1-165]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
R
F
V
V
E
K
N
N
L
K
V
T
S
P
D
S
I
K
G
I
Y
---
E
C
A
I
G
N
F
G
V
P
Q
Y
G
G
T
L
V
G
T
V
V
Y
P
KS
N
Q
K
---
A
C
K
S
Y
S
D
F
D
I
S
F
K
SKPGR
L
P
T
F
V
L
I
D
R
G
D
C
Y
F
T
L
K
A
W
I
A
Q
-
Q
A
G
A
A
A
I
L
V
A
D
S
K
A
E
PLITMDTPEEDKSD
A
D
------------
Y
L
Q
N
I
T
I
P
S
A
L
I
T
K
T
L
G
D
S
I
K
-
S
A
L
S
G
G
D
M
V
N
M
K
L
D
W
TESVPHP------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
51.52
26%
-
* C5 *
-
3O0Z
-
ROCK1_HUMAN
A:
[555-657]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
----
T
---
E
S
D
T
A
V
R
L
R
K
S
--
H
T
E
M
S
---------
K
---
S
I
S
Q
L
E
S
L
N
R
E
L
Q
E
R
N
------
R
I
L
E
N
S
K
-
S
Q
T
D
K
D
Y
Y
-------
Q
L
Q
A
I
L
E
A
E
R
R
--------------
D
R
G
H
D
S
E
M
I
G
D
L
Q
A
R
I
T
S
L
Q
E
E
V
K
H
L
K
H
N
L
-
E
K
V
E
-
G
E
R
K
E
A
Q
D
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
51.33
15%
60
- C4 -
-
4C4A
3
ANM7_MOUSE
A:
[27-688]
H
Q
E
I
A
R
SS
Y
A
D
M
L
H
D
K
D
R
N
I
K
Y
Y
Q
G
I
R
A
A
V
S
R
V
K
D
R
G
Q
K
A
L
V
L
D
I
GTGTG
L
L
S
M
M
A
V
T
A
GAD
F
C
Y
A
I
E
VF
K
P
M
A
E
A
A
V
K
I
V
E
R
N
GFSDK
I
K
V
I
NKHSTEVTVGPDGDLPCRAN
I
L
I
T
ELFDTELIGEG
A
L
P
S
Y
E
H
A
H
K
HLVQEDCEAVPH
R
A
T
V
Y
A
Q
L
V
E
S
R
R
M
W
S
W
N
K
L
F
P
V
R
V
R
T
S
L
G
E
Q
V
I
V
P
P
S
E
----
L
---
E
R
C
P
G
A
---
P
S
--
V
C
D
I
-----------------
Q
L
N
Q
V
S
P
A
D
F
---------
T
V
L
S
D
V
L
-
P
M
F
S
V
D
F
S
K
Q
-
V
S
S
S
A
-------
A
C
H
--------------
S
R
------------
Q
F
V
P
L
A
S
G
Q
A
Q
V
V
L
S
W
-
W
D
I
E
-
M
D
P
E
G
K
I
K
C
T
MAPFWAQTDPQE
L
Q
W
R
DH
W
M
Q
C
V
Y
F
L
P
Q
E
E
P
V
V
QG
S
P
R
C
L
V
A
H
H
D
DY
C
V
W
Y
S
L
Q
R
TSPQVRPVCDCQAHLLWN
R
P
R
F
G
E
I
N
D
Q
D
R
T
D
H
Y
A
Q
A
L
R
T
V
LLPG
S
V
C
L
C
V
S
D
GSL
L
S
M
L
A
H
H
L
GAE
Q
V
F
T
V
E
SS
V
A
S
Y
R
L
M
K
R
I
F
K
V
N
HLEDK
I
S
V
I
NKRPELLTAADLEGKKVS
L
L
L
G
EPFFTTSLLPWHNL
Y
F
W
Y
V
R
T
S
V
DQHLAPGAVVMPQ
A
A
S
L
H
A
V
I
V
E
F
RDLWRIRSPCGDCEGFDV
H
I
M
D
D
M
I
K
H
S
L
D
FRE
S
R
E
A
E
P
H
PLWE
Y
P
C
R
S
LSK
P
Q
E
I
L
TFDFQQPIPQ
Q
P
M
Q
S
K
G
T
M
E
LTRPGKSH
G
A
V
L
W
M
E
Y
QLTPD
S
T
I
S
TGLINPG
D
C
C
W
NPH
C
K
Q
A
V
Y
F
L
STPR
S
V
S
Y
V
V
E
F
H
PLTG
D
I
T
M
E
F
R
L
A
29
Fugue
47.47
23%
85
- C6 -
-
2HEQ
-
YORP_BACSU
A:
[1-84]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
G
D
P
L
------------
P
K
Y
----
W
---
S
-------
Y
P
V
--
G
L
A
V
E
I
------
N
N
N
ARY
G
C
P
H
H
V
G
R
K
G
K
I
I
---------
E
H
L
H
S
-----
A
T
Y
D
Y
A
V
S
-
D
E
T
G
D
---------------------------------------
I
T
Y
F
K
E
H
E
L
T
P
L
K
G
G
-
L
A
Y
V
-
L
E
H
H
H
H
H
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
44.90
35%
128
- C8 -
-
3USD
2
A:
[274-319]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
A
L
F
G
K
N
G
K
N
--
C
P
D
K
----
F
CLF
K
S
E
T
K
N
L
L
F
N
D
--
N
T
E
C
L
A
------
K
L
G
---
G
R
P
T
Y
E
E
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
44.64
35%
143
- C8 -
-
3V5A
2
?
A:
[274-319]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
A
L
F
G
K
N
G
K
N
--
C
P
D
K
----
F
CLF
K
S
E
T
K
N
L
L
F
N
D
--
N
T
E
C
L
A
------
K
L
G
---
G
R
P
T
Y
E
E
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
44.54
35%
138
- C8 -
-
3UGW
2
A:
[274-319]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
A
L
F
G
K
N
G
K
N
--
C
P
D
K
----
F
CLF
K
S
E
T
K
N
L
L
F
N
D
--
N
T
E
C
L
A
------
K
L
G
---
G
R
P
T
Y
E
E
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
44.33
35%
142
- C8 -
-
4GRK
2
?
A:
[274-319]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
A
L
F
G
K
N
G
K
N
--
C
P
D
K
----
F
CLF
K
S
E
T
K
N
L
L
F
N
D
--
N
T
E
C
L
A
------
K
L
G
---
G
R
P
T
Y
E
E
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
44.29
35%
140
- C8 -
-
3U72
2
A:
[274-319]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
A
L
F
G
K
N
G
K
N
--
C
P
D
K
----
F
CLF
K
S
E
T
K
N
L
L
F
N
D
--
N
T
E
C
L
A
------
K
L
G
---
G
R
P
T
Y
E
E
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
44.28
35%
138
- C8 -
-
3UK4
1
?
A:
[274-319]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
A
L
F
G
K
N
G
K
N
--
C
P
D
K
----
F
CLF
K
S
E
T
K
N
L
L
F
N
D
--
N
T
E
C
L
A
------
K
L
G
---
G
R
P
T
Y
E
E
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
43.90
35%
152
- C8 -
-
4G2Z
2
A:
[274-319]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
A
L
F
G
K
N
G
K
N
--
C
P
D
K
----
F
CLF
K
S
E
T
K
N
L
L
F
N
D
--
N
T
E
C
L
A
------
K
L
G
---
G
R
P
T
Y
E
E
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
43.78
35%
147
- C8 -
-
3U8Q
2
A:
[274-319]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
A
L
F
G
K
N
G
K
N
--
C
P
D
K
----
F
CLF
K
S
E
T
K
N
L
L
F
N
D
--
N
T
E
C
L
A
------
K
L
G
---
G
R
P
T
Y
E
E
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
43.66
35%
145
- C8 -
-
4DIG
2
?
A:
[274-319]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
A
L
F
G
K
N
G
K
N
--
C
P
D
K
----
F
CLF
K
S
E
T
K
N
L
L
F
N
D
--
N
T
E
C
L
A
------
K
L
G
---
G
R
P
T
Y
E
E
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
43.65
35%
146
* C8 *
-
4FIM
2
?
A:
[274-319]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
A
L
F
G
K
N
G
K
N
--
C
P
D
K
----
F
CLF
K
S
E
T
K
N
L
L
F
N
D
--
N
T
E
C
L
A
------
K
L
G
---
G
R
P
T
Y
E
E
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
43.56
35%
141
- C8 -
-
4FJP
2
A:
[274-319]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
A
L
F
G
K
N
G
K
N
--
C
P
D
K
----
F
CLF
K
S
E
T
K
N
L
L
F
N
D
--
N
T
E
C
L
A
------
K
L
G
---
G
R
P
T
Y
E
E
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
43.19
35%
147
- C8 -
-
3VDF
1
A:
[274-319]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
A
L
F
G
K
N
G
K
N
--
C
P
D
K
----
F
CLF
K
S
E
T
K
N
L
L
F
N
D
--
N
T
E
C
L
A
------
K
L
G
---
G
R
P
T
Y
E
E
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
HHSearch
42.95
19%
-179
* C7 *
-
4RU3
-
?
A:
[155-185]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
A
T
R
I
S
I
R
G
D
N
I
K
I
T
A
P
S
N
----
V
---
T
V
D
T
P
Q
A
N
F
T
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
42.79
35%
144
- C8 -
-
4FOR
2
?
A:
[274-319]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
A
L
F
G
K
N
G
K
N
--
C
P
D
K
----
F
CLF
K
S
E
T
K
N
L
L
F
N
D
--
N
T
E
C
L
A
------
K
L
G
---
G
R
P
T
Y
E
E
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------