@TOME V2.3
(Mar 2018)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VVD2: (2017-12-23 )
MKKLSIGLIIMLSLFGCTDSKAKNQEKFLTHIHNNTPEPYKECMVMYIKNHWDDVWKTYDSEKVREARGETDIVNFMIERFLPECKK
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------........---.10........20---........30....-....40..------......50-----------.......-.60.------.......70........80......----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------MKKL
S
I
G
L
---
I
I
M
L
S
L
FGCTDSK---AK
N
Q
E
K
F
L
T
H
I
HNN-T
P
E
P
Y
K
E
C
------
M
V
M
Y
I
K
N
H
-----------
W
D
D
V
W
K
T-Y
D
S
E
------
K
V
R
E
ARGE
T
D
I
V
N
F
M
I
E
R
F
L
P
ECKK----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
66
Fugue
61.02
19%
68
- C5 -
-
5EUR
-
?
A:
[2-128]
------------------------------------------------------------------------------------------------------------------------------------------------------------S
I
S
Y
R
K
L
D
I
A
L
S
AD
K
E
T
V
L
V
F
G
Q
E
L
S
T
---
K
Y
F
T
E
I
V
V
T
T
M
L
N
S
-
T
G
S
D
M
A
N
S
------
N
R
I
L
N
D
I
H
A
A
GLDAGDYG
K
Y
S
R
W
W
A
Q
-
S
N
A
Q
------
E
R
Q
E
A
E
R
R
R
K
E
A
K
A
H
Q
E
R
M
A
A
I
H
A
R
E
E
A
L
I
K
R
FG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
71
Fugue
56.87
18%
73
* C6 *
-
4BHW
1
EP300_HUMAN
A:
[14-576]
K
K
I
F
K
P
E
E
L
R
Q
A
L
M
P
T
L
E
A
L
Y
R
QDPESLPFRQPVDPQLLGIPDYFDIVK
S
P
M
D
L
S
T
I
K
R
K
L
D
T
GQYQE
P
W
Q
Y
V
D
D
I
W
L
M
F
N
N
A
W
L
Y
NRKTS
R
V
Y
K
Y
C
S
K
L
S
E
V
F
E
Q
E
I
D
P
V
M
Q
S
L
GYCCGRK
L
E
F
S
PQTLCCYGKQL
C
T
I
P
R
D
A
T
Y
Y
S
Y
QNR
Y
H
F
C
E
K
C
F
N
E
I
Q
-
G
E
---
S
V
S
L
G
D
D
P
S
Q
P
Q
T
---
T
I
N
K
E
Q
F
S
K
R
K
N
D
T
L
D
P
E
L
F
V
E
C
TECGRK
M
H
Q
I
C
V
L
H
-----------
H
E
I
I
W
P
A
G
F
V
C
D
------
G
C
L
K
K
S
A
R
T
R
K
E
N
K
F
S
A
K
R
L
P
S
T
R
L
G
T
F
L
E
N
R
V
N
D
F
L
R
R
Q
NHPE
S
G
E
V
T
V
R
V
V
H
A
S
D
K
T
V
E
V
K
P
G
M
K
A
R
FVDSGEMAE
S
F
P
Y
R
T
K
A
L
F
A
F
E
E
I
DG
V
D
L
C
F
F
G
M
H
V
Q
E
Y
G
SDCPPPNQR
R
V
Y
IS
Y
L
D
S
V
HFFRPKCL
R
T
A
V
Y
H
E
I
L
I
G
Y
L
E
Y
V
K
K
L
GYT
T
G
H
I
WACPPSEGDDYIFHCHPPDQ
K
I
P
K
P
K
R
L
Q
E
W
F
K
K
M
L
D
K
A
V
S
E
RIVH
D
Y
K
D
I
F
K
Q
A
T
E
D
RLTSAKE
L
P
Y
F
E
GD
F
W
P
N
V
L
E
E
S
I
K
E
S
GGSGSQK
L
Y
A
T
M
E
K
H
KEV
F
F
V
I
R
LIAGPAANSL
P
P
I
V
D
PD
P
L
I
P
C
DLMDGR
D
A
F
L
T
L
A
R
D
K
HLEFSS
L
R
R
A
Q
W
S
T
M
C
M
L
V
E
L
H
T
Q
S
Q
D
69
Fugue
56.76
18%
-19
- C5 -
-
5A34
1
AIMP2_HUMAN
B:
[19-232]
--------------------------------------------------------------------------------------------------------------------------------DLNSVLGKDYGALK
D
I
V
I
N
A
N
PASPP
L
S
L
L
V
L
H
R
L
L
C
E
H
---
F
R
V
L
S
T
V
H
T
H
S
S
V
---
K
S
V
P
E
N
L
L
K
C
F
G
R
Q
----
D
Y
Q
L
G
------
F
T
L
I
W
K
N
V
-----------
P
K
T
Q
M
K
--
F
S
I
Q
------
T
M
C
P
I
E
G
E
G
N
I
A
R
F
L
F
S
L
F
G
Q
K
H
N
A
V
N
A
T
L
I
D
S
W
V
D
I
A
I
FQLKEGS
S
K
E
K
A
A
V
F
R
S
M
N
S
A
L
G
K
SPWLAGNELT
V
A
D
V
V
L
W
S
V
L
Q
Q
IS
V
T
V
P
A
N
V
Q
R
W
M
R
S
C
E
N
L
A
P
F
N
T
A
L
K
L
L
K----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
56.23
21%
-62
- C7 -
-
1N8V
3
?
B:
[57-95]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
C
T
E
N
Q
---
E
K
G
A
Y
R
V
I
E
H
L
I
K
N
-
E
I
------------------
E
I
-----------
W
R
E
L
T
A
K
-
Y
D
P
T
------
G
N
W
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
68
Fugue
54.36
15%
-3
- C5 -
-
2AN7
-
PARD_ECOLX
A:
[1-83]
---------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
R
L
T
I
D
M
-------------
T
D
Q
---
Q
H
Q
S
L
K
A
L
A
A
L
Q
G
K
-
T
I
K
Q
Y
A
L
E
------
R
L
F
P
G
D
A
D
-----------
A
D
Q
A
W
Q
E
-
L
K
T
M
LGNRIN
D
G
L
A
G
K
V
S
T
K
S
V
G
E
I
L
D
E
E
L
S
G
D
R
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
54.18
19%
-43
- C7 -
-
2JNT
-
?
A:
[54-96]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
C
T
E
A
Q
---
E
K
G
A
E
T
S
I
D
Y
L
I
K
N
-
E
L
------------------
E
I
-----------
W
K
E
L
T
A
H
-
F
D
P
D
------
G
K
W
R
K
K
Y
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
51.38
23%
-12
- C7 -
-
2GVS
-
?
A:
[59-98]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
C
N
E
K
Q
---
K
E
G
T
K
K
V
L
K
H
L
I
N
H
-
K
P
------------------
D
V
-----------
W
A
Q
L
K
A
K
-
Y
D
P
D
------
G
T
Y
S
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
73
Fugue
50.79
14%
-90
- C5 -
-
1VBV
-
HSPQ_ECOLI
A:
[3-97]
---------------------------------------------------------------------------------------------------------------------------------------------------------------
A
S
K
F
G
I
G
Q
---
Q
V
R
H
S
L
L
G
--------------
Y
L
G
V
V
V
D
I
-
D
P
V
A
A
P
W
Y
------
H
V
V
M
E
D
D
N
-----------
G
L
P
V
H
T
Y
-
L
A
E
A
------
Q
L
S
S
E
L
Q
D
E
H
P
E
Q
P
S
M
D
E
L
A
Q
T
I
R
K
Q---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
74
Fugue
50.60
15%
-31
- C5 -
-
2JRM
-
?
A:
[1-60]
---------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
R
Q
K
R
D
R
---
L
E
R
A
Q
S
Q
G
Y
K
A
G
L
---
N
G
R
S
Q
E
A
C
----------
P
Y
Q
Q
---------
V
D
A
R
S
Y
-----------
W
L
G
G
W
R
D
-
A
R
D
E
------
K
Q
S
G
L
Y
K
L
E
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
72
Fugue
47.42
31%
-110
- C6 -
-
1WO4
-
A:
[1-25]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
V
S
A
C
A
L
S
K
CAA
A
A
N
V
A
A
H
M
T
H
C
A
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
47.26
35%
-119
- C7 -
-
1VL2
-
ASSY_THEMA
A:
[143-176]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
K
---
D
P
E
------
F
L
A
K
F
K
--
T
D
L
I
N
Y
A
M
E
K
G
I
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
HHSearch
47.11
13%
-129
- C7 -
-
2CP9
-
A:
[6-37]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
G
S
S
K
E
L
L
M
K
L
R
R
K
-
T
G
Y
S
F
V
N
C
------
K
K
A
L
E
T
C
G
-----------
G
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
75
Fugue
43.87
37%
27
* C5 *
-
2KHF
-
?
A:
[1-25]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
A
W
K
N
F
-----------
W
S
S
L
R
K
G
F
Y
D
G
E
------
A
G
R
A
I
R
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
59
HHSearch
40.90
11%
-117
- C7 -
-
1AIP
-
EFTS_THET8
C:
[5-32]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
I
K
K
L
R
E
A
-
T
G
A
G
M
M
D
V
------
K
R
A
L
E
D
A
G
-----------
W
D
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
54
HHSearch
36.45
30%
-34
- C7 -
-
5U89
-
?
B:
[44-63]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
N
T
R
S
A
C
-------
L
D
Y
I
N
A
H
-----------
W
I
D
M
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
70
Fugue
35.02
26%
147
- C5 -
-
1P5L
1
RL1_HELPY
A:
[1-19]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
K
V
---
S
K
R
L
E
K
L
F
S
K
I
Q
N
D
-
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
34.72
55%
23
- C4 -
-
4EQB
-
?
A:
[119-136]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
N
E
T
------
M
V
D
E
A
P
E
H
-----------
W
D
D
L
W
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
41
HHSearch
34.05
33%
-54
- C7 -
-
2GPF
-
?
A:
[41-58]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
G
L
K
K
D
C
-------
L
A
Y
I
E
E
V
-----------
W
T
D
M
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
HHSearch
33.22
33%
-33
- C7 -
-
2PST
-
?
X:
[41-58]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
G
L
K
K
D
C
-------
L
A
Y
I
E
E
V
-----------
W
T
D
M
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
53
HHSearch
31.88
16%
-
- C1 -
-
4IED
-
?
C:
[8-17]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
I
S
F
G
N
E
N
---
Q
F
M
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------