@TOME V2.3
(Mar 2018)
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
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Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : I3U071: (2017-12-18 )
MTRLKTMREKKQTSTFAKVTKFVIWTMLILTIGSVVLTAVMSVM
Atome Classification :
(15 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------........-.10.......----.20....----.----...30.---.......----40...-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MTRLKTMR-EKKQTSTFAK----VTKFVIW----T----MLILTI---GSVVLTA----VMSVM-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
80.36
29%
-124
* C5 *
-
4FHL
9
YEKI_SCHPO
A:
[2-392]
-------------------------------------------------G
S
M
T
L
S
S
N
Q
Y
Q
L
P
LN
V
R
P
Y
T
TTWCSQSPSCSN
L
L
A
I
G
H
DT
G
I
T
I
Y
C
A
S
E
ES
T
G
L
T
L
Q
E
L
F
TIQTGLPTL
H
L
S
F
S
SS
C
S
Y
S
ENSPVYS
L
F
L
A
C
V
C
QDN
T
V
R
L
I
I
T
KNETII
T
Q
H
V
L
G
G
KSGHHNFVN
D
I
D
I
A
D
V
Y
S
ADNRLA
E
Q
V
I
A
S
V
GDDC
T
L
I
I
W
R
LTDE
G
P
I
L
A
G
Y
P
L
SSPGI
S
V
Q
F
R
PSNPN
Q
L
I
V
G
E
RNG
N
I
R
I
F
DWTLNLTELVKNPWL
L
T
L
N
TLPLVNSSLA
N
V
R
W
I
G
SDGS
G
I
L
A
M
C
KSG
A
W
L
R
W
N
LFKNLLPN
V
Q
G
I
S
LFPSLL
G
A
C
P
H
PRYMD
Y
F
A
T
A
HSQHG
L
I
Q
L
I
N
T
Y
-
E
K
D
S
N
S
I
P
I
Q
LGMP
I
V
D
F
C
W
H
QDGS
H
----
L
A
I
A
T
E
---
G
S
V
L
L
T
R
----
L
M
G
F
T
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
72.49
26%
44
* C4 *
-
4C4A
3
ANM7_MOUSE
A:
[27-688]
H
Q
E
I
A
R
SS
Y
A
D
M
L
H
D
K
D
R
N
I
K
Y
Y
Q
G
I
R
A
A
V
S
R
V
K
D
R
G
Q
K
A
L
V
L
D
I
GTGTG
L
L
S
M
M
A
V
T
A
GAD
F
C
Y
A
I
E
VF
K
P
M
A
E
A
A
V
K
I
V
E
R
N
GFSDK
I
K
V
I
NKHSTEVTVGPDGDLPCRAN
I
L
I
T
ELFDTELIGEG
A
L
P
S
Y
E
H
A
H
K
HLVQEDCEAVPH
R
A
T
V
Y
A
Q
L
V
E
S
R
R
M
W
S
W
N
KL
F
P
V
R
V
R
T
SL
G
E
Q
V
I
V
P
P
S
E
L
E
R
CPGAPSVCDIQLNQVSPADFTVLSDVLPM
F
S
V
D
FSKQVSS
S
A
A
C
H
S
R
Q
F
V
P
LASGQA
Q
V
V
L
S
W
W
D
I
E
MDPEGK
I
K
C
T
MAPFWAQTDPQE
L
Q
W
R
DH
W
M
Q
C
V
Y
F
L
P
Q
E
E
P
V
V
QG
S
P
R
C
L
V
A
H
H
D
DY
C
V
W
Y
S
L
Q
R
TSPQVRPVCDCQAHLLWN
R
P
R
F
G
E
I
N
-
D
Q
D
R
T
D
H
Y
A
Q
----
A
L
R
T
V
--------------
L
L
P
---
G
S
V
C
L
C
V
S
D
GS
L
L
S
M
L
A
H
H
L
GAE
Q
V
F
T
V
E
SS
V
A
S
Y
R
L
M
K
R
I
F
K
V
N
HLEDK
I
S
V
I
NKRPELLTAADLEGKKVS
L
L
L
G
EPFFTTSLLPWHNL
Y
F
W
Y
V
R
T
S
V
DQHLAPGAVVMPQ
A
A
S
L
H
A
V
I
V
E
F
RDLWRIRSPCGDCEGFDV
H
I
M
D
D
M
I
K
H
S
L
D
FRE
S
R
E
A
E
P
H
PLWE
Y
P
C
R
S
LSK
P
Q
E
I
L
TFDFQQPIPQ
Q
P
M
Q
S
K
G
T
M
E
LTRPGKSH
G
A
V
L
W
M
E
Y
QLTPD
S
T
I
S
TGLINPG
D
C
C
W
NPH
C
K
Q
A
V
Y
F
L
STPR
S
V
S
Y
V
V
E
F
H
PLTG
D
I
T
M
E
F
R
L
A--------------
12
Fugue
58.21
21%
-114
- C3 -
-
1FH1
-
NODF_RHILV
A:
[5-86]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
L
E
-
I
I
S
A
I
N
K
L
V
L
----
G
L
A
D
V
L
W
----
D
----
L
E
Q
L
N
I
---
G
D
V
V
E
A
V
----
R
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
53.65
6%
-108
- C4 -
-
2N72
-
A:
[1-69]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
Q
Q
K
Q
Q
I
M
-
A
A
L
N
S
Q
T
A
V
Q
----
F
Q
Q
Y
A
A
Q
----
Q
----
Y
P
G
N
Y
E
---
Q
Q
Q
I
L
I
R
----
Q
L
Q
E
Q
H
Y
Q
Q
Y
M
Q
Q
L
Y
Q
V
Q
L
A
Q
Q
Q
A
A
L
QKQQ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
51.63
15%
37
- C5 -
-
1BF4
2
DN7D_SULAC
A:
[1-63]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
T
V
K
F
K
Y
K
G
-
E
E
K
E
V
D
I
S
K
I
----
K
K
V
W
R
V
G
----
K
----
M
I
S
F
T
Y
D
E
G
G
G
K
T
G
R
G
----
A
V
S
E
K
DAP
K
E
L
L
Q
M
L
E
K
QKK----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
48.23
9%
-54
- C4 -
-
3J46
-
SECG_ECOLI
G:
[47-68]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
G
N
F
M
T
R
----
M
T
A
L
L
A
T
----
L
----
F
F
I
I
S
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
47.93
9%
-40
- C4 -
-
3J45
-
SECG_ECOLI
G:
[46-68]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
G
S
G
N
F
M
T
R
----
M
T
A
L
L
A
T
----
L
----
F
F
I
I
S
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
Fugue
44.92
13%
-52
- C4 -
-
2KA6
-
B:
[1-45]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
H
M
S
E
V
H
P
S
R
L
Q
T
T
D
N
L
L
----
P
M
S
P
E
E
F
----
D
----
E
V
S
R
I
V
---
G
S
V
E
F
D
S
----
M
M
N
T
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
43.21
17%
47
- C4 -
-
3DIN
-
SECG_THEMA
H:
[46-68]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
K
G
L
D
T
G
G
K
----
I
T
L
V
L
S
V
----
L
----
F
F
V
S
C
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
38.85
8%
-
- C4 -
-
2AKH
-
SECG_ECOLI
A:
[47-70]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
G
N
F
M
T
R
----
M
T
A
L
L
A
T
----
L
----
F
F
I
I
S
L
---
V
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
36.92
27%
-
- C4 -
-
4PL0
-
MCJD_ECOLX
B:
[4-15]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
Q
K
N
S
L
F
N
Y
----
I
Y
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
35.48
11%
-
- C4 -
-
3HD7
1
STX1A_RAT
B:
[71-89]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
T
K
K
A
V
-
K
Y
Q
S
K
A
R
R
K
K
----
I
M
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
34.74
9%
-27
- C4 -
-
5HC3
-
?
A:
[22-365]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MTNKIAEDPRID
P
R
I
K
A
I
FSGMDL
G
G
G
G
D
V
E
S
R
E
A
M
L
-
E
A
A
S
S
E
E
A
T
A
----
V
R
D
G
L
R
V
----
F
----
L
D
A
C
D
N
---
E
E
I
A
P
S
A
----
G
L
K
I
E
D
Y
E
F
T
S
E
PDG
N
I
A
K
I
QYIRPDST
D
K
L
P
C
V
Y
Y
I
H
G
GGMQSLSCYY
G
N
Y
R
A
W
G
K
I
I
A
S
N
G
V
A
V
A
M
V
E
F
RNALVPSALP
E
V
A
P
Y
P
A
G
L
N
D
C
V
S
G
V
K
W
V
A
A
H
ADELGIDAS
R
I
I
I
A
G
E
S
G
G
G
N
L
T
L
A
A
G
L
R
L
K
Q
E
GSQDLIQ
G
L
Y
A
L
CPYIAGSWPSEDS
P
S
S
T
E
N
NGILLDLHNN
Q
G
A
M
G
Y
G
I
E
A
Y
E
M
RDPLAWPGFATEEDVSGL
V
P
T
F
I
S
V
N
ECDPL
R
D
E
G
I
N
F
Y
R
L
L
L
R
A
GVS
A
K
C
R
Q
V
M
GTIHGTEIFPIAC
P
D
V
S
R
D
T
A
A
S
I
A
N
F
C
K
GG
10
Fugue
33.34
15%
136
- C1 -
-
2RVB
-
XPC_HUMAN
A:
[109-156]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
H
H
L
K
R
G
A
-
T
M
N
E
D
S
N
E
E
E
----
E
E
S
E
N
D
W
----
E
EVEE
L
S
E
P
V
L
---
G
D
V
R
E
S
T
----
A
F
S
R
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
19.34
11%
273
- C2 -
-
2M8R
-
STX1A_RAT
A:
[250-268]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
T
K
K
A
V
-
K
Y
Q
S
K
A
R
R
K
K
----
I
M
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------