@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : I3U386: (2017-12-24 )
MRRVLCAAYFFSFQRSDLVVKALCQMMLVKRNLRIIWTEQKEENLFLFCLFG
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10----.....-...20-----------........30..----..-....40---.........50.-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MR
R
V
L
C
A
A
Y
F
F
----
S
FQRS-
D
L
V
V
K
-----------
A
L
C
Q
M
M
L
V
KRN
L
----
R
I
-
I
W
T
EQ----KEE
N
L
F
L
F
C
LFG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
58.89
41%
-242
- C4 -
-
4O36
-
?
B:
[5-28]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
C
N
Q
M
M
K
S
R
N
L
---------
T
K
D
RC--
K
P
V
N
T
F
V
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
58.02
41%
-282
- C4 -
-
1RBD
-
RNAS1_BOVIN
A:
[5-28]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
C
N
Q
M
M
K
S
R
N
L
---------
T
K
D
RC--
K
P
V
N
T
F
V
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
56.45
29%
-302
- C4 -
-
5AR6
2
RNAS4_PIG
A:
[25-50]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
-----------
A
Y
C
N
L
M
M
Q
R
R
K
M
--------
T
-
S
H
YC--
K
R
F
N
T
F
I
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
55.90
24%
-367
- C2 -
-
4NRN
-
?
B:
[61-81]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
P
D
L
----
L
L
-
V
Y
Q
I
K
----
K
Q
E
N
T
L
F
L
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
55.06
32%
-2
- C3 -
-
4UFC
1
?
A:
[21-807]
DL
K
L
W
Y
SQPAQNWSE
A
L
P
I
G
NSR
L
G
A
M
V
YGGIE
R
E
E
L
Q
L
N
E
ETFWAGSPYNNNNP
N
A
V
H
V
L
P
V
V
R
K
L
I
F
E
GR
N
K
E
A
Q
R
L
I
D
A
NFLTQQH
G
M
S
Y
L
T
L
G
S
L
Y
L
E
FPEHQNGSG
F
Y
R
D
L
N
LENA
T
T
T
T
R
Y
Q
V
DD
V
T
Y
T
R
T
T
F
ASFTDN
V
I
I
M
H
I
K
A
SKANA
L
N
F
T
I
A
Y
N
C
P
L
V
H
K
V
N
V
Q
ND
Q
L
T
V
T
C
Q
G
K
E
Q
EGLKAA
L
R
A
E
C
Q
I
Q
V
K
T
N
G
T
L
R
P
A
GN
T
L
Q
I
N
EGT
E
A
T
L
Y
I
S
A
ATNYVNYQDVSAD
E
S
H
R
T
S
E
Y
L
K
R
A
M
Q
IP
Y
E
K
A
L
K
N
H
I
A
Y
Y
K
K
Q
F
D
R
V
R
L
T
L
P
AGKASQLE
T
P
K
R
I
E
N
FGNGED
M
A
M
A
A
L
L
F
H
Y
G
R
Y
L
L
I
S
S
SQPGGQPANLQGIWNNSTHAPWDSKYTINI
N
T
E
M
N
Y
W
PAEVTNLSETH
S
P
L
F
S
M
L
K
D
L
S
V
T
G
A
E
T
A
R
T
M
YDC
R
G
W
V
A
H
HNTDLWRICGVVDFAAAGMWPS
G
G
A
W
L
A
Q
H
I
W
Q
H
Y
L
F
T
GN
K
E
F
L
K
E
Y
Y
P
I
L
K
G
T
A
Q
F
Y
M
D
F
LVEHPVYK
W
L
V
V
S
PSVSPEHGPITAGC
T
M
D
N
Q
I
A
F
D
A
L
H
N
T
L
L
A
S
Y
I
A
GEA
P
S
F
Q
D
S
L
K
Q
T
L
E
-----------
K
L
P
P
M
Q
I
G
K
H
N
Q
----
L
Q
-
E
W
L
E
D
IDNP
K
D
E
H
R
H
I
S
H
L
Y
G
LYPSNQISPYSN
P
E
L
F
Q
A
A
R
N
T
L
L
Q
R
GDKAT
G
W
S
I
G
W
K
V
N
F
W
A
R
M
LD
G
N
H
A
F
Q
I
I
K
N
M
IQLLPNDHLAKEYPNGRTYPNMLDAHPPFQI
D
G
N
F
G
Y
T
A
G
V
A
E
M
L
LQSHDGAVHLLPALPDAWE
E
G
S
V
K
GLVARGN
F
T
V
D
M
D
W
K
NNVLN
K
A
I
I
R
S
NIG
S
T
L
R
I
R
S
Y
V
P
L
K
GKG
L
K
Q
V
N
GKECSNRLF
A
T
T
P
I
K
Q
P
L
V
A
K
GVS
A
Q
S
P
K
L
Q
K
V
Y
E
Y
D
I
ETKAG
K
T
Y
I
V
N
T
I
21
Fugue
54.65
15%
-5
- C3 -
-
2EPS
-
A:
[1-54]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSSGSSGSV
G
K
P
Y
I
C
Q
S
C
G
K
----
G
F
S
R
P
-
D
H
L
N
G
-----------
H
I
K
Q
V
H
T
S
E
R
P
H
----
K
C
Q
V
W
V
S
G
----
P
S
S
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
52.68
50%
-368
- C1 -
-
1D2B
-
A:
[11-22]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
F
C
N
S
-
D
L
V
I
R
-----------
A
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
51.93
27%
-325
* C5 *
-
2GBW
-
?
F:
[153-174]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
F
R
R
K
L
----
I
L
-
D
A
R
V
T
----
Q
D
K
N
L
Y
F
F
C
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
49.17
27%
-258
- C5 -
-
2GBX
-
?
B:
[153-174]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
F
R
R
K
L
----
I
L
-
D
A
R
V
T
----
Q
D
K
N
L
Y
F
F
C
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
48.62
31%
-68
- C4 -
-
4WYZ
1
RNAS1_BOVIN
A:
[24-49]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
-----------
N
Y
C
N
Q
M
M
K
S
R
N
L
----
T
--
K
D
-
R
C
----
K
P
V
N
T
F
V
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
46.82
31%
-77
- C4 -
-
4WYP
-
?
B:
[24-49]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
-----------
N
Y
C
N
Q
M
M
K
S
R
N
L
----
T
--
K
D
-
R
C
----
K
P
V
N
T
F
V
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
44.56
17%
-285
- C4 -
-
1M07
1
RNASO_LITCT
B:
[17-42]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
N
C
N
T
I
M
D
N
N
I
Y
----
I
----
V
G
G
QC--
K
R
V
N
T
F
I
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
43.91
31%
-89
- C4 -
-
1DY5
1
?
B:
[23-46]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
-----------
N
Y
C
N
Q
M
M
K
S
R
N
L
----
T
--
K
D
-
R
C
----
K
P
V
N
T
F
V
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
43.04
30%
-
- C4 -
-
4PER
-
ANGI_CHICK
B:
[24-52]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
-----------
A
Y
C
N
V
M
M
V
R
R
G
I
----
N
V
-
H
G
-
R
C
----
K
S
L
N
T
F
V
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
41.60
31%
-76
- C4 -
-
1RBJ
1
RNAS1_BOVIN
A:
[23-48]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
-----------
N
Y
C
N
Q
M
M
K
S
R
N
L
----
T
--
K
D
-
R
C
----
K
P
V
N
T
F
V
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
37.34
15%
140
- C4 -
-
2P7S
2
AMPS2_LITPI
A:
[10-49]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
F
K
T
K
-
H
I
T
S
Q
SVAD-------
F
N
C
N
R
T
M
N
D
P
A
Y
----
T
P
----
D
G
QC--
K
P
I
N
T
F
I
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
37.17
20%
-171
- C3 -
-
5KTF
-
A:
[1-73]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSKI
E
P
V
V
L
P
L
L
W
F
E
Q
S
GA
M
G
G
K
P
L
S
T
F
Y
T
----
Q
L
V
L
M
-
P
Q
V
L
H
-----------
Y
A
Q
Y
V
L
L
G
L
G
G
L
L
L
L
V
P
I
-
I
C
Q
L
R
----
S
Q
E
K
C
F
L
F
--
W
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
36.68
17%
-60
- C3 -
-
2HG7
-
XKDW_BACSU
A:
[1-60]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
L
Y
D
A
I
M
Y
K
Y
P
N--
A
V
S
R
K
-
D
F
E
L
R
N
DGN
G
S
Y
I
EKW
N
L
R
A
P
L
P
T
Q
A
E
L
----
E
T
-
W
W
E
E
L
----
Q
K
N
P
P
Y
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
36.36
9%
-152
- C3 -
-
1B9U
-
ATPF_ECOLI
A:
[1-33]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
N
L
N
A
-
T
I
L
G
Q
-----------
A
I
A
F
V
L
F
V
L
F
C
M
----
K
Y
-
V
W
P
P
L
----
M
A
A
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
35.57
10%
120
- C3 -
-
4BPY
-
?
A:
[42-216]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QA
A
T
V
L
D
K
P
F
E
KPDLVLTDTQGKKYD
L
R
E
Q
T
A
G
K
P
T
L
I
Y
F
----
G
Y
T
H
P
-
D
V
A
P
L
-----------
T
M
N
N
I
A
V
A
K
K
Q
L
----
S
----
Q
A
E
----
Q
D
K
L
R
V
V
F
V
S
T
D
PERDT
P
A
A
L
G
K
W
L
K
G
I
DPQ
I
V
G
L
T
G
E
F
D
T
I
Q
A
G
A
R
T
L
G
I
S
I
D
P
PGTQ
V
V
A
F
S
PKSDAGY
V
L
Y
G
EDAT
V
D
D
Y
T
K
D
L
P
K
L
I
K
GENP-----------------------------------------------------------------------------------------------------------------------------------------------