@TOME V2.3
(Mar 2018)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Q3XZ73: (2018-01-12 )
MGLKFERTDNLDKLFESFAVDPEKTVAPKEEIDRFLKPQPQNEKKKDKKQK
Atome Classification :
(18 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------..----..--....----.10----........-.----------20.....-----...30........40........50-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------MG----LK--FERT----D
N
-----
L
D
K
L
F
E
S
F-A----------VDPEKTV-----A
P
K
E
E
I
D
R
F
LKPQPQN
E
K
K
KDKKQK-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
66.74
23%
138
- C7 -
-
4P0G
3
MLTF_PSEAE
A:
[7-435]
--------------------------------------------------------------------------------------------------------------APT
A
L
E
R
V
Q
K
E
G
V
L
R
V
I
T
R
NSPA
T
Y
F
Q
D
RN
G
E
T
G
F
E
Y
E
L
A
K
R
F
A
E
R
L
G
V
E
----
L
K
--
I
E
T
A
----
D
N
-----
L
D
D
L
Y
A
Q
L
-
S
----------
R
E
G
G
P
A
L
-----
A
A
A
G
-----
L
T
P
G
R
E
D
D
A
S
V
R
Y
S
H
T
Y
L
D
V
T
P
Q
I
I
Y
R
N
GQQRPTRPEDLVGKR
I
M
V
L
K
GS
S
H
A
E
Q
L
A
E
L
K
K
Q
Y
PE
L
K
Y
E
E
S
DAVE
V
V
D
L
L
R
M
V
D
V
GDID
L
T
L
V
D
S
N
E
L
A
M
N
QVYFPNVRVAFDFG
E
A
R
G
L
A
W
A
L
P
G
G
DDD
S
L
M
N
E
V
N
A
F
L
D
Q
A
K
K
E
G
L
L
Q
R
L
K
D
R
Y
YGHVDVLG
Y
V
G
A
Y
T
F
A
Q
H
L
Q
Q
RLPRY
E
S
H
F
K
Q
S
G
K
Q
L
DTD
W
R
L
L
A
A
I
G
Y
Q
E
SLWQPGATSKTGVRGLMMLT
N
R
T
A
Q
A
M
GVSNRLD
P
K
Q
S
I
Q
G
G
S
K
Y
F
V
Q
I
R
S
E
LPESIKE
P
D
R
S
W
F
A
L
A
A
Y
N
IG
G
A
H
L
E
D
A
R
K
M
A
E
K
E
GLNPNK
W
L
D
V
K
K
M
LPRLAQKQWYAKTRYGYAR
G
G
E
T
V
H
F
V
Q
N
V
R
R
Y
Y
D
I
L
T
W
V
T
Q
P
Q
12
Fugue
63.93
13%
148
- C6 -
-
2GQC
-
?
A:
[1-70]
--------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
AVQV
L
K
--
F
P
L
S
----
V
D
-----
L
A
G
F
V
G
L
L
-
R
R
L
NVP
H
R
V
S
E
E
S
G
Q
Q
V
L
W
V
P
DE
R
L
A
E
Q
V
R
E
L
Y
R
R
Y
P
E
G
D
P
Q
A
T
L
E
A
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
62.27
19%
104
- C7 -
-
1BW5
-
A:
[1-66]
--------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
----
T
T
--
R
V
R
T
V
L
N
E
K
Q
-----
L
H
T
L
R
T
C
Y
-
A
----------
A
N
P
R
P
D
A
-----
L
M
K
E
Q
L
V
E
M
T
G
L
S
P
R
V
I
R
V
W
F
Q
N
K
R
C
K
D
K
KRSIMMK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
60.09
37%
-129
- C7 -
-
3UF8
-
SMT3_YEAST
A:
[35-53]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
K
--
I
K
K
T
----
T
P
-----
L
R
R
L
M
E
A
F
-
A
----------
K
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
56.43
13%
13
- C7 -
-
2N2C
-
TADBP_HUMAN
A:
[307-349]
--------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
----
G
G
--
M
N
-----------------
F
G
A
F
-
S
----------
I
N
P
A
M
M
A
-----
A
A
Q
A
A
L
Q
S
S
W
G
M
M
G
M
L
A
S
Q
Q
N
Q
S
G
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
Fugue
51.38
21%
-12
- C7 -
-
4US3
11
?
A:
[10-450]
GREQWASRL
G
F
I
L
A
A
M
G
S
A
VGLGNI
W
R
F
S
Y
V
T
G
E
N
GG
A
A
F
L
L
V
Y
L
G
F
I
A
LI
G
I
P
I
V
L
A
E
F
T
I
G
R
R
A
QSD
A
V
G
S
F
E
K
L
APGKPWK
V
A
G
L
M
G
V
A
A
G
F
L
I
L
S
F
Y
G
V
I
A
G
W
I
L
F
Y
L
F
N
Y
I
T
GQLWSAPAEG
F
G
G
F
F
E
G
F
I
A
NPT
L
P
L
F
W
Q
A
L
F
M
I
A
T
I
W
I
V
A
I
G
----
V
K
KG
I
E
R
S
----
N
K
I
L
M
P
L
L
G
V
L
L
I
A
L
-
A
----------
I
Y
S
L
T
L
G
-----
G
A
K
E
G
L
A
F
L
F
S
P
D
W
S
A
L
K
D
P
G
V
Y
L
A
A
I
S
Q
A
F
F
T
L
SLGMG
A
L
I
T
Y
G
S
Y
VSKDSR
L
P
G
A
A
V
S
V
A
G
L
D
T
A
F
A
I
I
A
G
I
M
I
F
P
A
V
F
A
L
GLSPSGGPG
L
V
F
V
V
L
P
D
I
F
D
S
IRL
G
P
I
V
G
I
A
F
F
I
L
L
G
A
A
A
L
S
S
A
V
S
L
L
E
V
P
V
A
Y
F
M
R
K
F
DWS
R
K
Q
A
A
I
T
L
G
V
I
I
T
L
L
G
I
P
S
S
L
S
F
GVLGEVTIIPGLN
I
F
D
S
V
D
F
I
A
SSV
F
L
P
L
G
G
M
I
I
A
L
F
I
G
WGWK
T
S
D
A
L
A
E
S
DLTDS
V
W
G
K
L
W
I
L
S
L
R
F
I
A
P
I
A
I
L
I
V
F
L
S
A
F--------------------------------------------------------------------------------------------------------------
3
HHSearch
51.13
25%
-60
- C7 -
-
4Q63
1
?
A:
[75-98]
--------------------------------------------------------------------------------------------------------------------------------------------------------------
I
V
----
L
H
--
F
T
K
E
----
D
E
-----
T
N
K
L
F
L
V
L
-
K
----------
R
L
R
D
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
48.67
21%
111
- C7 -
-
1K4U
-
NCF1_HUMAN
P:
[359-390]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
K
P
Q
P
A
V
-----
P
P
R
P
S
A
D
L
I
L
N
R
C
S
E
S
T
K
R
K
L
A
S
A
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
48.16
9%
131
- C7 -
-
1OHT
3
PGPLB_DROME
A:
[12-184]
-------------------------------------T
A
R
L
L
S
RSDWGARLPK
S
V
E
H
F
Q
G
PAP
Y
V
I
I
H
H
SYMPAVCYS
T
P
D
C
M
K
S
M
R
D
M
Q
D
F
H
QLERGWNDIGYS
F
G
I
G
GDG
M
I
Y
T
G
RGFNVIGAHAPKYNDK
S
V
G
I
V
LIGDWRTELPP
K
Q
M
L
D
A
A
K
N
L
I
----
A
F
--
G
V
F
K
----
G
Y
-----
I
D
P
A
Y
K
L
L
G
H
----------
R
Q
V
R
D
T
E
-----
C
P
G
G
R
L
F
A
E
I
S
S
W
P
H
F
T
H
I
N
D
T
E
G
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
45.00
20%
-
* C7 *
-
2AG3
-
?
A:
[5-29]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
E
D
K
L
E
E
I
L
S
Y
H
I
E
N
E
L
A
R
I
K
K
L
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
42.64
16%
-95
- C7 -
-
2L76
-
NF2IP_HUMAN
A:
[278-296]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
P
--
L
R
M
S
----
E
P
-----
L
Q
S
V
V
D
H
M
-
A
----------
T
H
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
40.45
17%
14
- C7 -
-
3LQV
-
SF3B6_HUMAN
B:
[96-113]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
E
----
E
Q
-----
L
K
L
L
K
E
K
Y
-
G
----------
I
N
T
D
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
38.28
27%
-40
- C4 -
-
3JUA
-
YAP1_MOUSE
B:
[1-11]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
----
T
D
-----
L
E
A
L
F
N
A
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
36.11
40%
-
- C2 -
-
5GN0
-
?
F:
[6-12]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
A
L
F
N
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
29.90
40%
290
- C3 -
-
5GN0
-
?
G:
[3-12]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
----
T
D
-----
L
E
A
L
F
N
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
22.80
27%
277
- C1 -
-
3JUA
-
YAP1_MOUSE
F:
[2-11]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
D
-----
L
E
A
L
F
N
A
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
14.31
23%
-
- C5 -
-
3ZDL
-
AB1IP_HUMAN
B:
[7-15]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
-----
I
D
Q
M
F
S
T
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
9.49
7%
-
- C7 -
-
4NPX
-
?
A:
[29-43]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
----
K
V
-----
F
E
E
F
F
A
D
H
-
I
----------
A
M
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------