@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : MGG_02207T0: (2018-03-19 )
KKGDCFMGLYEAGGRNPNHIIGQETPDDSGIFELRRENGSVIQVKVKKCQLVAYWGWVPLGQELRVFPSVGYDAKRKTAPLPSLSPNRHSGQGLKVRGANTWIAF
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------------------.......-..-10.....----------...20.-------...--....30-.---........40.---..---------.--...-.50-------......--..60.....-..----.----70...---..--...80.-........-------90......----..100....-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------KKG
D
C
F
M
-
G
L
-
Y
EAGGRN----------PNHIIG-------QET--PDDS
G
--
I
---
F
E
L
RRENG
S
V
I
---
Q
V
---------
K
--
V
K
K
-
C
Q
L
-------
V
A
Y
WGW--VPLGQE
L
R
V-FP----S----VGYDA---KR--KTAP-L-PSLSPNRH-------SGQ
G
L
K
V
R----GAN-TWIAF-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
46
Fugue
54.30
24%
-10
- C5 -
-
3FHC
-
NU214_HUMAN
A:
[9-405]
I
P
E
R
E
M
KDFQFRA
L
K
K
V
R
IFDSPEELPKER
S
S
L
L
AVSNKYG
L
V
F
A
G
G
AS
G
L
Q
I
F
PTKNL
L
I
Q
N
K
PGDDPNKIVD
K
V
Q
G
L
L
V
P
M
KFPIH
H
L
A
L
S
CDNL
T
L
S
A
C
M
M
S
SEY
G
S
I
I
A
F
F
DVRTFSNEAQ
K
R
P
F
A
Y
H
-
K
L
-
L
K
D
A
G
G
M
----------
V
I
D
M
K
W
-------
N
P
T
--
V
P
S
M
V
--
A
---
V
C
L
A
D
G
S
I
A
V
L
---
Q
V
---------
T
E
T
V
K
V
-
C
A
T
L
P
STVA-
V
T
S
V
C
W
--
S
P
K
G
K
Q
L
A
V
-
G
K
----
Q
NG
T
V
V
Q
Y
L
P
TLQ
E
K
--
K
V
I
P
-
C
-
P
P
F
Y
E
S
D
H
-------
P
V
R
V
L
D
V
L
----
W
I
G
-
T
Y
V
F
A
I
V
Y
A
AADGTLE
T
S
P
D
V
V
M
A
L
L
P
KKEEK
H
P
E
I
F
V
N
FMEPCYGSCTERQ
H
H
Y
Y
L
S
Y
I
EEWD
L
V
L
A
A
S
AAST
E
V
S
I
L
A
R
Q
SDQI
N
W
E
S
W
L
L
E
DSSRA
E
L
P
V
T
DKS
D
D
S
L
P
M
G
V
V
V
D
YTNA
P
V
L
M
L
L
S
TDG
V
L
C
P
F
Y
M
I
N---------------------------------------------
45
Fugue
52.77
33%
32
- C9 -
-
1ZEL
10
?
A:
[2-297]
---------------------------------------------------------------------------------------------A
M
V
V
S
PAGA
D
R
R
I
P
TWA
S
R
V
V
S
G
L
A
R
D
RPVVV
T
K
E
D
L
T
Q
-
R
L
-
T
E
A
G
C
G
R
----------
D
------------------
P
D
S
A
--
I
---
R
E
L
R
R
I
-
G
W
L
V
---
Q
L
---------
P
--
V
K
G
-------------
T
W
A
F
--
I
P
P
G
E
A
A
I
S
-
D
P
----
Y
------------------
L
P
-
L
-
R
S
W
L
A
R
D
Q
-------
N
A
-
G
F
M
L
A
----
G
A
S
-
A
A
W
H
L
GYLD
R
Q
P
D
G
R
I
P
I
W
L
P
PAKRLPDGLASY
V
S
V
V
R
I
PWNAAD
T
A
L
L
A
PR
P
A
L
L
V
R
R
RLDLVAWATG
L
P
A
L
G
P
E
A
L
L
V
Q
I
A
T
RPASFGPWADLVPH
L
D
D
L
V
A
D
CS
D
E
R
L
E
R
L
L
SGRP
T
S
A
W
Q
R
A
S
Y
L
L
D
S
G
GE
P
A
R
G
Q
A
L
L
A
K
RHTEVMPVTRFTTAHSG
E
S
V
W
A
PEYQLVDEL
V
V
P
L
L
R
V
I
G
K
39
Fugue
47.69
23%
-122
- C8 -
-
3C5X
-
?
C:
[1-81]
-----------------------------------------------------------------------------------------------------------------------------------
F
-
H
L
-
T
T
R
N
G
-
E
----------
P
H
M
I
V
S
-------
R
Q
E
--
K
G
K
S
-------
L
L
F
K
T
E
D
G
--------------------
V
N
M
-
C
T
L
-------
M
A
M
------
D
L
G
E
L
C
E
D
-
T
I
----
T
----
Y
K
C
----------------
P
L
L
R
Q
N
E
P
-------
E
D
I
D
C
W
C
N
----
S
T
S
-
T
W
V
T
Y
GTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
47.28
30%
-74
- C8 -
-
1XUB
-
PHZF_PSEFL
A:
[104-158]
-------------------------------------------------------------------------------------------------------------------------------------------
G
A
H
T
----------
D
N
H
R
L
Y
-------
L
E
T
--
Q
M
G
T
I
--
A
---
F
E
L
E
R
Q
N
G
S
V
I
---
A
A
---------
S
--
M
D
Q
------------
P
I
P
T
W
--
T
A
L
G
R
D
A
E
L
-
L
K
----
A
----
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
47.01
30%
-75
- C8 -
-
1T6K
-
PHZF_PSEFL
A:
[84-138]
-------------------------------------------------------------------------------------------------------------------------------------------
G
A
H
T
----------
D
N
H
R
L
Y
-------
L
E
T
--
Q
M
G
T
I
--
A
---
F
E
L
E
R
Q
N
G
S
V
I
---
A
A
---------
S
--
M
D
Q
------------
P
I
P
T
W
--
T
A
L
G
R
D
A
E
L
-
L
K
----
A
----
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
46.80
30%
-70
- C8 -
-
1U1V
-
PHZF_PSEFL
A:
[104-158]
-------------------------------------------------------------------------------------------------------------------------------------------
G
A
H
T
----------
D
N
H
R
L
Y
-------
L
E
T
--
Q
M
G
T
I
--
A
---
F
E
L
E
R
Q
N
G
S
V
I
---
A
A
---------
S
--
M
D
Q
------------
P
I
P
T
W
--
T
A
L
G
R
D
A
E
L
-
L
K
----
A
----
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
Fugue
46.64
17%
-
* C6 *
-
3RNV
-
A:
[336-458]
-------------------------------------------------------------------------------------------------------------------------M
Y
I
A
K
E
G
Y
C
Y
I
-
N
I
-
F
L
A
M
L
V
N
----------
V
K
E
S
Q
A
-------
K
E
F
--
T
K
V
V
R
DK
L
---
V
G
E
L
G
K
W
P
T
L
L
---
D
V
---------
A
--
T
A
C
-
Y
F
L
-------
K
V
F
Y
P
D
--
V
A
N
A
E
-----
L
P
----
R
----
M
L
V
D
H
---
K
T
--
K
I
I
H
-
V
V
D
S
Y
G
S
L
S
T
-------
G
Y
H
V
L
K
T
N
----
T
V
E
-
Q
L
I
K
F
T
R
CNLESSLKHYRVG----------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
46.10
30%
-80
- C8 -
-
1XUA
-
PHZF_PSEFL
A:
[104-158]
-------------------------------------------------------------------------------------------------------------------------------------------
G
A
H
T
----------
D
N
H
R
L
Y
-------
L
E
T
--
Q
M
G
T
I
--
A
---
F
E
L
E
R
Q
N
G
S
V
I
---
A
A
---------
S
--
M
D
Q
------------
P
I
P
T
W
--
T
A
L
G
R
D
A
E
L
-
L
K
----
A
----
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
45.61
30%
-68
- C8 -
-
1U1W
-
PHZF_PSEFL
A:
[104-158]
-------------------------------------------------------------------------------------------------------------------------------------------
G
A
H
T
----------
D
N
H
R
L
Y
-------
L
E
T
--
Q
M
G
T
I
--
A
---
F
E
L
E
R
Q
N
G
S
V
I
---
A
A
---------
S
--
M
D
Q
------------
P
I
P
T
W
--
T
A
L
G
R
D
A
E
L
-
L
K
----
A
----
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
45.57
30%
-62
- C8 -
-
1U1X
-
PHZF_PSEFL
A:
[104-158]
-------------------------------------------------------------------------------------------------------------------------------------------
G
A
H
T
----------
D
N
H
R
L
Y
-------
L
E
T
--
Q
M
G
T
I
--
A
---
F
E
L
E
R
Q
N
G
S
V
I
---
A
A
---------
S
--
M
D
Q
------------
P
I
P
T
W
--
T
A
L
G
R
D
A
E
L
-
L
K
----
A
----
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
45.29
30%
-58
- C8 -
-
5IWE
5
PHZF_PSEFL
A:
[104-158]
-------------------------------------------------------------------------------------------------------------------------------------------
G
A
H
T
----------
D
N
H
R
L
Y
-------
L
E
T
--
Q
M
G
T
I
--
A
---
F
E
L
E
R
Q
N
G
S
V
I
---
A
A
---------
S
--
M
D
Q
------------
P
I
P
T
W
--
T
A
L
G
R
D
A
E
L
-
L
K
----
A
----
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
41
Fugue
43.90
20%
-108
- C8 -
-
3L9A
1
?
X:
[9-88]
-------------------------------------------------------------------------------------------------------------------------------
R
D
F
F
V
-
I
T
-------
N
----------
S
E
Y
T
F
A
------------------------
G
V
H
Y
A
K
G
A
V
L
---
H
V
---------
S
--
P
T
---
Q
K
-------
R
A
F
W
----
V
I
A
D
Q
E
N
F
I
-
K
Q
----
V
----
N
K
N
I
E
---
Y
V
--
E
K
N
A
-
S
-
P
A
F
L
Q
R
I
V
-------
E
I
Y
Q
V
K
F
E
----
G
K
N
-
V
H
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
53
SP3
40.38
15%
-18
- C5 -
-
1V3W
4
?
A:
[1-173]
-----------------------------------------------------------------------------------------------------------------------------------
M
-
A
I
-
Y
E
I
N
G
K
K
P
R
I
H
PS
A
F
V
D
E
N
A
V
V
I
-------
G
D
V
V
L
E
E
K
T
S
--
V
W
P
S
A
V
L
R
G
D
I
E
Q
I
Y
V
G
K
Y
S
---------
N
--
V
Q
D
N
V
S
I
H
T
S
HG
Y
P
T
E
I
G
E
Y
--
V
T
I
G
H
N
A
M
V
-
H
G
----
A
K
---
V
G
N
Y
V
-------
I
I
G
I
-
S
-
S
V
I
L
D
G
A
K
-------
I
G
D
H
V
I
I
-----
G
A
G
-
A
V
V
P
P
N
K
E
I
P
D
Y
S
L
V
L
G
VPGKVV
R
Q
L
T
E
E
E
I
E
W
T
K
K
N
A
E
I
Y
V
E
L
A
E
K
H
I
K
GRKRI-----------------------------------------------------------------------------------------------------------------------------------
33
HHSearch
37.65
29%
-235
- C14 -
-
1YD6
-
UVRC_GEOKA
D:
[11-31]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
--
P
E
Q
P
G
--
C
---
Y
L
M
K
D
K
H
G
T
V
I
---
Y
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
HHSearch
36.64
29%
-231
- C14 -
-
1YD6
-
UVRC_GEOKA
C:
[11-31]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
--
P
E
Q
P
G
--
C
---
Y
L
M
K
D
K
H
G
T
V
I
---
Y
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
43
Fugue
36.62
16%
11
* C9 *
-
3Q93
3
8ODP_HUMAN
A:
[23-176]
-------------------------------------------------------------------------------------------------------------------A
S
R
L
Y
T
L
V
L
V
L
Q
P
Q
R
V
L
-
L
G
-
M
K
K
R
G
F
G
----------
A
G
R
W
N
G
F
GGKVQE
G
E
T
--
I
E
D
G
A
--
R
---
R
E
L
Q
E
E
S
G
L
T
V
---
D
A
---------
L
--
H
K
V
-
G
Q
I
-------
V
F
E
F
V
G
--
E
P
E
L
M
D
V
H
V
-
F
C
----
T
----
D
S
I
Q
G
---
T
P
--
V
E
S
D
----
E
M
R
P
C
W
F
-------
Q
L
D
Q
I
P
F
K
DMW
P
D
D
S
-
Y
W
F
P
L
L
L
Q
K
K
K
F
H
G
Y
F
K
F
QGQDTIL
D
Y
T
L
R
E
V
DTV-------------------------------------------------------------------------------------------------------------------------------------------------------
40
Fugue
36.10
20%
-1
- C6 -
-
5TPM
-
PDHR_ECOLI
A:
[1-155]
-----------------------------------------------------------------------------------------------------------------------------
S
N
A
D
L
L
E
-
T
R
-
H
A
L
E
G
I
A
----------
A
Y
Y
A
A
L
-------
R
S
T
--
D
E
D
K
E
--
R
---
I
R
E
L
H
H
A
I
E
L
A
---
Q
Q
S
GD
L
D
A
E
S
N
A
--
V
L
Q
-
Y
Q
I
-------
A
V
T
E
A
A
HN
V
V
L
L
H
L
L
R
C
M
E
P
M
L
A
Q
N
----
V
R
Q
N
F
---
E
L
L
Y
S
R
R
E
M
L
-
P
L
V
S
S
H
R
T
R
I
F
E
A
I
M
A
G
K
P
E
E
A
R
----
E
A
S
H
R
H
L
A
F
I
E
E
I
L
L
D
R
S
R
E
E
S
R
R
E
R
S
L
R
R
LE--------------------------------------------------------------------------------------------------------------------------------------------------------------
44
Fugue
35.12
17%
-5
- C6 -
-
5TKZ
-
?
A:
[4-92]
-----------------------------------------------------------------------------------------------------------------------------
Q
V
R
T
L
F
V
S
G
L
P
M
D
A
K
P
R
E
----------
L
Y
L
L
F
R
-------
G
A
R
--
G
Y
E
G
A
--
L
---
L
K
M
T
S
K
N
G
-------------------------
K
P
-------
T
S
P
V
G
F
--
V
T
F
L
S
-----------------
Q
Q
D
A
---
Q
D
--
A
R
K
M
-
L
-
Q
G
V
R
F
D
P
E
-------
A
A
Q
V
L
R
L
E
----
L
A
K
-
S
N
T
K
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
34.12
28%
-303
* C13 *
-
2JVW
-
DNABP_VIBF1
A:
[22-39]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
E
L
-------
V
E
H
Y
G
W
--
E
E
L
S
Y
M
V
N
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
Fugue
32.92
13%
-46
* C8 *
-
2MHG
-
?
A:
[1-75]
----------------------------------------------------------------------------------------------------------------------------------------
G
A
D
D
D
A
P
----------
S
G
E
P
D
V
-------
T
I
R
--
Q
E
G
D
K
--
T
---
I
Q
E
Y
R
V
N
G
F
L
Y
---
A
I
---------
K
--
V
V
P
-
K
H
G
-------
K
P
Y
F
L
V
--
R
A
D
G
S
D
G
N
F
-
I
R
----
S
----
D
Q
P
D
K
---
L
I
--
P
Q
W
E
-
I
-
F
S
W
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------