@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : MGG_04735T0: (2018-03-19 )
DVPKHGQVDSRHGQGSSNHGNNKPDKQFLWGWRCQVALIEHVDGKKVEVGKVVTEIGGEGSLHNVQLGEKGYVRFKTRQNCYPDIIEGTMDGDRFELGHKRRWTVVRTTKVPGEDKAPLVAETQ
Atome Classification :
(20 SA)
----------------------------------------------........--.10....-------....-20--.--........-----------------30--...-...-.------.40........50-.....-.----..---------60..-....------.-.----70---.....--...80...-.....90--.........100........110-.......-120..-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
----------------------------------------------DVPKHGQV--DSRHGQG-------SSNH-G---N--NKPDK
Q
F
L
-----------------
W
G
--
W
R
C
-
Q
V
A
-
L
------
I
EHVDGK
K
V
E
V
G
K
-
V
V
T
E
I-G----GE---------GSL
H
-
N
V
Q
L------G-E----K
G
---
Y
V
R
F
K--TRQNC
Y
P
D
-
I
I
EGTM---DGDRFELGHK
R
-
R
W
T
V
V
R
T
TKVP-GEDKAPL-VAETQ-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
57.91
20%
-9
- C6 -
-
3TIJ
6
?
A:
[8-422]
S
L
F
M
S
L
I
G
M
A
V
L
L
G
I
A
V
L
L
SSNRKAIN
L
R
T
V
G
G
A
F
A
I
Q
F
S
L
G
A
F
I
L
Y
V
P
W
G
Q
E
L
--
L
R
G
F
S
D
A
-------
V
S
N
V
I
N
---
Y
--
G
N
D
G
T
S
F
L
-----------------
F
G
--
G
L
V
-
S
G
K
-
M
------
F
E
V
F
G
G
G
G
F
I
F
A
F
-
R
V
L
P
T
-
L
----
I
F
---------
F
S
A
L
-
I
S
V
L
------
Y
-
Y
----
L
G
--------------
V
M
Q
W
-
V
I
R
I
L
G
---
G
G
L
Q
K
A
L
G
T
S
R
-
A
E
S
M
S
A
A
A
N
I
F
V
G
Q
T
E
A
P
L
-
V
V
R
P
F
VPKMT
Q
S
E
L
F
A
V
M
C
G
G
L
A
S
IA
G
G
V
L
A
G
Y
A
S
M
GVK
I
E
Y
L
V
A
A
S
F
M
A
A
P
G
G
L
L
F
A
K
L
M
MPET
E
K
P
Q
DKPAN
V
I
D
A
A
A
G
G
A
S
A
G
L
Q
L
A
L
N
V
G
A
M
L
I
A
F
I
G
L
I
A
L
I
N
G
M
L
G
G
I
G
G
W
F
GMPELK
L
E
M
L
L
G
W
L
F
A
P
L
A
F
L
I
GVPWNE
A
T
V
A
G
E
F
I
G
L
K
T
V
AN
E
F
V
A
Y
S
Q
F
APYLTEAAP
V
V
L
S
E
K
T
K
A
I
I
S
F
A
L
CGFAN
L
S
S
I
A
I
L
L
G
G
L
G
S
L
A
PKR
R
G
D
I
A
R
M
G
V
K
A
V
I
A
G
T
L
S
N
L
M
A
A
T
I
A
G
F
F
L
35
SP3
51.71
20%
54
* C7 *
-
1LPL
-
TBCB_CAEEL
A:
[135-229]
-----------------------------------------------------------------------
S
D
K
-
L
---
N
--
E
E
A
A
K
N
I
M
-----------------
V
G
--
N
R
C
-
E
V
-----------
T
V
G
A
Q
M
A
R
R
G
--
E
V
A
Y
V
-
G
A
T
KF
K
E
---------
G
V
W
V
-
G
V
K
Y
------
D
-
E
P---
V
G
-------
K
--
N
D
----------
G
S
V
---
A
G
V
R
Y
F
D
C
D
P
K
-
Y
G
G
F
V
R
P
V
D
V
K
-
V
G
D
F
P
E
L
S
I
D
E
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
SP3
51.64
10%
8
* C5 *
-
1WHY
-
A:
[74-170]
--------------------------------------------------------
G
S
S
G
S
S
G
-------
K
I
G
Y
-
G
---
K
--
A
N
P
T
T
-----------------------------
R
L
-
W
------
V
G
G
L
G
-
P
N
T
S
L
A
A
-
L
A
R
E
F
-
D
----
R
F
---------
G
S
I
R
-
T
I
D
H
V
-----
K
-
G
----
D
S
F
A
-
Y
I
Q
Y
E
--
S
L
D
A
A
-
Q
A
-
A
C
A
-
K
M
---
R
G
F
P
L
G
G
P
D
R
R
L
R
V
D
F
A
K
S
G
P
S
S
-
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
SP3
51.55
15%
72
- C5 -
-
1WI8
-
IF4B_HUMAN
A:
[81-184]
---------------------------------------------------------
G
S
S
G
S
S
-------
G
S
R
L
-
P
---
K
--
S
P
P
Y
T
A
F
L
-----------------
G
N
LP
Y
D
V
T
E
E
S
-
I
------
K
E
F
F
R
G
L
N
I
S
A
V
R
-
L
P
R
E
P
-
S
----
N
P
---------
E
R
---------------
L
----
K
G
F
G
-
Y
A
E
F
E
--
D
-----
L
D
-
S
L
L
S
A
L
---
S
L
N
E
E
S
L
G
N
-
K
-
R
I
R
V
D
V
A
D
Q
A
Q
-
D
K
D
S
G
P
S
-
S
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
SP3
51.05
15%
2
- C7 -
-
1F39
-
RPC1_LAMBD
A:
[136-236]
-------------------------------------------------
A
S
A
S
A
--
F
W
L
E
V
E
G
-------
N
S
M
T
-
A
---
P
--
T
G
S
K
P
S
F
P
-----------------
D
G
------
M
L
I
-
L
------
V
D
P
--
E
Q
A
V
E
P
G
D
F
C
I
A
R
L
G
G
----
D
E
---------
F
T
F
K
-
K
L
I
R
--------
D
----
S
G
---
Q
V
F
L
Q
--
P
L
N
P
Q
Y
P
M
-
I
---
P
C
---
N
E
S
C
S
V
V
G
------
K
V
I
A
S
-
Q
W
P
-
E
E
T
F
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
50.62
20%
12
- C- -
-
3GW2
-
?
A:
[7-99]
----------------------------------------------
R
K
A
A
L
L
D
Q
--
V
A
R
V
G
K
A
-------
L
A
N
G
---------------------------------------
R
-
R
L
Q
-
I
------
L
D
L
L
A
Q
G
E
R
A
V
E
A
-
I
A
T
A
T
-
G
M---
N
L
---------
T
T
A
S
A
N
L
Q
A
------
L
-
K
----
S
G
-----------------
G
-
L
V
E
A
R
R
---
E
G
T
-------------
R
Q
Y
Y
R
I
A
-
G
E
D
V
A
R
L
-
F
A
L
V
Q
V
V
A
D
E--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
50.10
44%
-70
- C10 -
-
3GD4
2
AIFM1_MOUSE
A:
[278-346]
-----------------------------------------------------------------------------------------------------------------------
L
------
I
K
L
K
D
G
R
K
V
E
T
D
H
-
I
V
T
A
V
-
G
----
L
E
---------
P
----
N
V
E
L
------
A
-
K
----
T
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
49.50
19%
42
* C8 *
-
5MMI
-
RK21_SPIOL
S:
[68-237]
---------------------------------LKAEFEEFQRPPN
Q
K
P
Q
L
S
D
V
LP
D
D
F
Q
A
P
E
-------
P
G
T
P
-
E
---
Y
--
N
D
I
I
N
Q
F
L
PKKGPPPPREEIFAVVV
I
G
--
S
R
Q
-
Y
I
V
-
I
PGRWIY
T
Q
R
L
K
G
A
T
V
N
D
K
I
-
V
L
N
K
V
-
L
----
L
V
---------
G
T
K
A
-
S
T
Y
I
------
G
-
T
PIVT
N
A
---
A
V
H
A
V
--
V
E
E
Q
L
L
D
D
K
V
I
V
F
K
Y
KKK
K
N
Y
R
R
N
I
G
H
R
Q
-
P
I
T
R
I
K
I
T
G
I
T
-
G
Y
E
D
Y
P
A
-
S
T
L
E
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
SP3
49.29
14%
62
- C5 -
-
1WF1
-
RALY_HUMAN
A:
[1-110]
---------------------------------------------------
G
S
S
--
G
S
S
G
M
S
L
-------
K
L
Q
A
-
S
---
N
VT
N
K
N
D
P
K
S
I
------------------
N
--
S
R
V
-
F
I
G
----------
N
L
N
T
A
L
V
K
K
S
D
-
V
E
T
I
F
-
S
----
K
Y
---------
G
R
V
A
-
G
C
S
V
--------
H
----
K
G
Y
A
-
F
V
Q
Y
S
--
N
E
R
H
A
-
R
A
-
A
V
L
G
-
E
---
N
G
R
V
L
A
-
G
--
Q
-
T
L
D
I
N
M
A
G
E
P
K
-
P
D
R
S
G
P
S
-
S
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
48.30
17%
-29
- C6 -
-
4U1R
-
PFKAP_HUMAN
A:
[446-537]
----------------------------------------------------
D
V
--
G
G
W
T
G
Q
G
-------
G
S
I
L
-
G
---
T
--
K
R
V
-
L
P
G
K
---------------------
Y
L
E
-
E
---
I
------
A
T
Q
M
R
T
H
S
--
I
-
N
-
A
L
L
I
I
-
G
----
G
F
---------
E
A
Y
L
-
G
L
L
E
------
L
-
S
----
A
A
R
EK
H
E
E
F
C
--
V
P
M
V
M
V
P
A
-
T
V
S
N
N
V
---
P
G
S
D
F
S
I
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
48.08
44%
-36
- C10 -
-
3GD3
1
AIFM1_MOUSE
A:
[302-352]
-----------------------------------------------------------------------------------------------------------------------
L
------
I
K
L
K
D
G
R
K
V
E
T
D
H
-
I
V
T
A
V
-
G
----
L
E
---------
P
----
N
V
E
L
------
A
-
K
----
T
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
47.04
19%
47
- C6 -
-
5M72
2
SRP72_HUMAN
A:
[2-151]
----------------------------------------------
S
V
P
A
L
W
S
E
--
V
N
R
Y
G
Q
N
GD
F
T
R
A
L
K
T
V
N
-
K
---
I
--
L
Q
I
N
K
D
D
V
-----------------
T
A
--
L
H
C
-
K
V
V
-
C
------
L
I
Q
-
N
G
S
F
K
E
A
L
N
-
V
I
N
T
-------
H
T
---------
K
V
L
A
-
N
N
S
L
------
S
F
E
----
K
A
---
Y
C
E
Y
R
L
N
R
I
E
N
A
L
K
T
-
I
E
S
A
N
Q
---
Q
T
D
K
L
K
E
L
Y
G
Q
-
V
L
Y
R
L
E
R
Y
D
E
C
-
L
A
V
Y
R
D
L
-
V
R
N
S
Q
DDY
D
E
E
R
K
T
N
L
S
A
V
V
A
A
Q
S------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
SP3
46.96
13%
97
- C5 -
-
1WG4
-
A:
[1-98]
------------------------------------------------------------
G
S
S
-------
G
S
S
G
-
G
---
P
--
P
T
R
R
S
D
F
-----------------------
R
V
-
L
V
S
G
L
------
P
P
S
G
S
------
W
Q
-
D
L
K
D
H
-
M
----
R
E
A--------
G
D
V
C
-
Y
A
D
V
------
Q
-
K
----
D
G
M
G
-
M
V
E
Y
L
--
R
K
E
D
-
M
E
Y
-
A
L
R
-
K
L
---
D
D
T
K
F
R
-
S
H
E
G
-
E
T
S
Y
I
R
V
--
Y
P
-
E
R
S
S
G
P
S
-
S
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
46.94
44%
-21
* C10 *
-
1GV4
1
AIFM1_MOUSE
A:
[297-327]
-----------------------------------------------------------------------------------------------------------------------
L
------
I
K
L
K
D
G
R
K
V
E
T
D
H
-
I
V
T
A
V
-
G
----
L
E
---------
P
----
N
V
E
L
------
A
-
K
----
T
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
46.83
20%
-16
- C8 -
-
2KCC
-
A:
[1-84]
-----------------------------------------------------------
M
E
N
D
-------
P
T
V
L
-
R
---
S
--
P
S
A
G
K
L
T
Q
-----------------
Y
T
--
V
E
-----------------
D
G
G
H
V
E
A
G
S
-
S
Y
A
E
M
-
E
----
V
M
---------
K
M
I
M
-
T
L
N
V
------
Q
-
E
----
R
G
---
R
V
K
Y
I
--
K
R
----------------
P
G
A
V
L
E
A
G
C
-----
V
V
A
R
L
E
L
-----
D
D
L
E
H
-
H
H
H
H
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
SP3
45.79
13%
29
- C5 -
-
1WEZ
-
A:
[1-102]
---------------------------------------------------
G
S
----
S
G
S
S
G
S
-------
S
F
Q
S
-
T
---
T
--
G
H
--
C
V
H
M
-----------------
R
G
LP
Y
R
A
-
T
E
N
D
I
------
Y
N
F
F
S
P
L
N
P
M
R
V
H
-
I
E
I
G
P
-
D
----
G
R
---------
V
T
-------------
G
-
E
-----
A
---
D
V
E
F
A
--
T
H
E
----
D
-
A
V
A
A
-
M
---
A
K
D
K
A
N
M
Q
H
-
R
-
Y
V
E
L
F
L
N
S
T
A
G
-
T
S
G
S
G
P
S
-
S
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
45.45
44%
-2
- C10 -
-
5MIU
1
AIFM1_MOUSE
A:
[302-361]
-----------------------------------------------------------------------------------------------------------------------
L
------
I
K
L
K
D
G
R
K
V
E
T
D
H
-
I
V
T
A
V
-
G
----
L
E
---------
P
----
N
V
E
L
------
A
-
K
----
T
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
SP3
44.49
13%
67
- C7 -
-
1WHH
-
A:
[1-102]
---------------------------------------------------
G
S
S
--
G
S
S
G
K
S
P
-------
S
S
P
S
-
L
GSL
Q
--
Q
R
E
G
A
K
A
E
-----------------
V
G
--
D
Q
V
-
L
V
-------------
A
G
Q
K
Q
G
I
V
R
-
F
Y
G
K
T
D
F
----
A
P
---------
G
Y
W
Y
-
G
I
E
L
------
D
-
Q
P---
T
G
-------
K
--
H
D
----------
G
S
V
---
F
G
V
R
Y
F
T
C
A
P
R
-
H
G
V
F
A
P
A
S
R
I
Q
-
R
I
G
S
G
P
S
-
S
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
SP3
43.72
12%
45
- C5 -
-
1U6F
-
?
A:
[1-139]
--------------------------------------------MS
Q
I
P
L
V
S
Q
Y
--
D
P
Y
G
Q
T
A
-------
Q
L
Q
Q
-
L
---
Q
--
Q
Q
Q
Q
Q
H
I
-----------------------
P
P
-
T
Q
M
-
N
------
P
E
P
D
V
L
R
N
L
M
V
N
Y
-
I
P
T
T
V
-
D
----
E
V
Q
L
R
Q
L
F
E
R
Y
G
P
I
E
-
S
V
K
I
VCDRET
R
-
Q
S---
R
G
Y
G
-
F
V
K
F
Q
--
S
G
S
S
A
-
Q
Q
-
A
I
A
-
G
L
---
N
G
--
F
N
I
L
-
N
K
-
R
L
K
V
A
L
A
A
S
G
H
-
Q
R
P
G
I
A
G
-
A
V
G
D
G
NGYL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
43.16
44%
-10
- C10 -
-
5MIV
2
AIFM1_MOUSE
A:
[302-374]
-----------------------------------------------------------------------------------------------------------------------
L
------
I
K
L
K
D
G
R
K
V
E
T
D
H
-
I
V
T
A
V
-
G
----
L
E
---------
P
----
N
V
E
L
------
A
-
K
----
T
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------