@TOME V2.3
(Mar 2018)
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : MGG_05896T0: (2018-03-19 )
STSTKVKLDNRKEPALCHVVIVKPAQIRHPLDTWVETFAWVKAGKVVEWHSPKYGSVKVKTDEDDCHLTFLVNELINGYTCQLSR
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.....--...----.10.....--...20-----------------.--.--......30.......-.40-.---------.------.-.-.-..-----------.--.50-------..----.------..--....60-----.....-----..----.------.70....----.--.-.--.80....-----------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------STS
T
K
--
V
K
L----DNRKEP
A
L
--
C
H
V
V
I
-----------------V--
K
--
P
A
QIRH
P
L
D
T
W
V
E
T
F
-
A
W
--
V
---------K------A-G-
K
-
V
V
-----------
E
--WH--------SP----K------YG--
S
V
K
V
K
------TDEDD-----C
H
----
L
------
T
F
L
V
N
E
L
----I--N-G--
Y
T
C
QLSR-----------------------------
26
Fugue
68.02
21%
16
- C4 -
-
2EO1
-
A:
[1-102]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G
S
S
G
S
S
G
--
K
V
V
----
F
A
K
E
Q
P
A
H
--
R
E
V
Q
A
-----------------
E
--
A
G
A
S
A
T
L
S
C
E
V
A
Q
A
Q
T
E
V
-
T
W
--
Y
---------
K
------
D
-
G
-
K
-
K
L
-----------
S
--------------------------
S
--
S
S
K
V
R
------
V
E
A
V
G
-----
C
T
----
R
------
R
L
V
V
Q
Q
A
GQAE
A
--
G
-
E
--
Y
S
C
E
A
G
G
Q
Q
L
S
F
R
L
Q
V
A
G
QCFG--------------
33
Fugue
58.60
18%
-10
- C4 -
-
4GJT
-
NECT4_HUMAN
C:
[2-113]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
E
--
L
E
T
----
S
D
V
V
T
V
V
L
--
G
Q
D
A
K
-----------------
L
-----
P
C
F
Y
R
G
D
S
G
E
Q
V
G
Q
V
-
A
W
--
A
---------
R
VDAGEG
A
-
Q
-
E
-
L
A
-----------
L
--
L
H
SKYGLHVS
P
A
----
Y
------
E
G
--
R
V
E
Q
P
------
P
P
P
R
N
PLDGS
V
L
----
L
------
R
N
A
V
Q
A
D
----
E
--
G
-
E
--
Y
E
C
R
V
S
T
FPAGSFQARLRL-----------------
36
SP3
55.33
17%
-0
- C4 -
-
1CPZ
-
COPZ_ENTHA
A:
[1-68]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
Q
E
--
F
S
V
----
K
G
M
S
C
N
H
---
C
-
V
A
R
-----------------
I
--
E
--
E
A
V
G
R
I
S
--------------------------------
G
V
K
-
K
V
-----------
K
--
V
---------
Q
L
----
K
------
K
E
--
K
A
V
V
K
------
F
D
E
A
N
-----
V
Q
----
A
------
T
E
I
C
Q
A
I
----
N
--
E
L
G
--
Y
Q
A
E
V
I
------------------------------
1
PsiBlast_PDB
53.93
41%
-121
- C5 -
-
3EQU
-
PBP2_NEIGO
A:
[200-239]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
D
Q
R
I
Q
T
L
-
A
Y
--
E
---------
E
------
L
-
N
-
K
-
A
V
-----------
E
--
Y
H
--------
Q
A
----
K
------
A
G
--
T
V
V
V
-------------------------------------------------------------------------------------
2
PsiBlast_PDB
53.56
41%
-118
* C5 *
-
3EQV
-
PBP2_NEIGO
A:
[200-236]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
D
Q
R
I
Q
T
L
-
A
Y
--
E
---------
E
------
L
-
N
-
K
-
A
V
-----------
E
--
Y
H
--------
Q
A
----
K
------
A
G
--
T
V
V
V
-------------------------------------------------------------------------------------
29
Fugue
53.03
21%
-47
- C4 -
-
1TTW
-
?
A:
[3-120]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
Y
S
S
L
L
E
E
F
A
T
E
--
L
G
L
----
E
E
I
E
T
N
E
L
--
G
H
G
A
V
-----------------
T
I
D
K
--
I
W
V
V
H
L
A
P
I
N
E
K
E
L
V
-
A
F
--
M
---------
R
------
A
-
G
-
I
-
L
T
GQS
Q
L
Y
D
I
L
R
K
N
--
L
F
--------
S
P
----
L
------
S
G
--
V
I
R
C
A
------
L
D
K
D
D
------
H
----
W
------
L
L
W
S
Q
L
N
----
I
--
N
-
D
--
T
S
G
T
Q
L
A
S
V
L
T
S
L
V
D
K
A
V
T
L
S---------------
41
SP3
52.73
27%
49
- C4 -
-
1JMT
1
U2AF1_HUMAN
A:
[1-104]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
Q
T
--
I
A
L
LNI
Y
R
N
P
Q
D
G
L
R
--
S
A
V
S
D
-----------------
V
--
E
--
M
Q
E
H
Y
D
E
F
F
E
E
V
F
T
E
-
M
E
--
E
---------
K
------
Y
-
G
-
E
-
V
E
-----------
E
--
M
N
--------
V
C
----
D
NLGDHL
V
G
--
N
V
Y
V
K
F
-----
R
R
E
E
D
-----
A
E
K
A
--
V
------
I
D
L
N
N
R
W
----
F
--
N
-
G
Q
P
I
H
A
E
L
S
P
-----------------------------
28
Fugue
52.46
15%
-19
- C4 -
-
2WB6
-
Y102_AFV1Y
A:
[11-124]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
S
T
--
S
L
Y
----
K
K
A
G
S
E
N
L
--
Y
F
Q
G
I
-----------------
V
--
D
--
K
N
K
I
V
I
P
M
S
E
F
L
D
S
M
-
F
L
--
V
I
EKLG
V
H
A
E
K
------
K
-
G
-
S
-
M
I
-----------
F
--
L
S
--------
S
E
----
R
------
V
K
--
L
A
D
W
K
Q
L
G
A
M
C
S
D
C
Y
H
-----
C
K
----
L
P
L
S
S
F
I
E
I
V
T
R
K
A
----
K
--
D
-
K
--
F
L
V
M
Y
N
E
K
E
V
T
L
V
ARG--------------------
4
PsiBlast_PDB
52.40
41%
-121
- C5 -
-
5KSH
-
PBP2_NEIGO
A:
[198-226]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
D
Q
R
I
Q
T
L
-
A
Y
--
E
---------
E
------
L
-
N
-
K
-
A
V
-----------
E
--
Y
H
--------
Q
A
----
K
------
A
G
--
T
V
V
V
-------------------------------------------------------------------------------------
3
PsiBlast_PDB
51.70
41%
0
- C- -
-
4U3T
-
PBP2_NEIGO
A:
[239-285]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
D
Q
R
I
Q
T
L
-
A
Y
--
E
---------
E
------
L
-
N
-
K
-
A
V
-----------
E
--
Y
H
--------
Q
A
----
K
------
A
G
--
T
V
V
V
-------------------------------------------------------------------------------------
38
SP3
50.63
10%
-103
- C4 -
-
1FVQ
-
ATU2_YEAST
A:
[1-72]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
R
E
V
I
--
L
A
V
----
H
G
M
T
C
S
A
---
C
-
T
N
T
-----------------
I
--
N
--
T
Q
L
R
A
L
K
----------
G
--
V
---------
T
------
K
-
C
-
D
-
I
-------------------------
S
L
----
V
------
T
N
--
E
C
Q
V
T
------
Y
D
-
N
E
-----
V
T
----
A
------
D
S
I
K
E
I
I
----
E
--
D
C
G
--
F
D
C
E
I
L
R
DS---------------------------
9
HHSearch
49.67
47%
-260
- C5 -
-
1BGF
-
STAT4_MOUSE
A:
[27-45]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
M
E
I
R
H
L
L
A
Q
W
I
E
T
Q
-
D
W
--
E
---------
V
------------------------------------------------------------------------------------------------------------------------------------------------
35
SP3
49.65
15%
69
- C4 -
-
1FX7
-
IDER_MYCTU
A:
[145-230]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA
D
D
A
N
L
--
V
R
L
----
T
E
L
P
A
G
S
P
--
V
A
V
V
V
-----------------
R
--
Q
L-
T
E
H
V
Q
G
D
I
D
L
I
T
R
L
K
D
A
G
--
V
---------
V
------
P
-
N
-
A
-
R
V
-----------
T
--
V
E
--------
T
T
----
P
------
G
G
--
G
V
T
I
V
------
I
P
G
H
E
------
N
----
V
------
T
-
L
P
H
E
M
----
A
--
H
-
A
--
V
K
V
E
K
V
------------------------------
20
HHSearch
49.53
12%
-45
- C4 -
-
1UKF
-
AVRP3_PSESH
A:
[199-261]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
H
L
L
S
-----------------
L
--
R
F
-
A
N
V
Q
G
H
A
I
A
C
-------
S
--
C
---------
E
--------
G
-
S
-
Q
F
-----------
K
--
L
F
--------
D
P
----
N
------
L
G
--
E
F
Q
S
S
------
R
S
A
A
P
-----
Q
L
----
I
------
K
G
L
I
D
H
Y
----
N
S
L
N
-
Y
--
D
V
A
C
V
-------------------------------
24
Fugue
49.13
17%
31
* C6 *
-
5FAA
1
?
A:
[149-271]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
T
Y
E
R
T
F
V
K
K
----
D
A
E
T
K
E
V
L
EG
A
G
F
K
I
S
N
SDG
K
F
L
K
L
T
D
KDG
Q
S
V
--
S
--
I
G
E
G
F
I
D
V
L
A
N
N
Y
R
L
-
T
W
--
V
---------
A
------
E
-
S
-
D
-
A
T
-----------
V
--
F
T
--------
S
D
----
K
------
S
G
--
K
F
G
L
N
G-----
F
A
D
N
T
-----
T
T
----
Y
------
T
A
V
E
T
N
V
----
P
--
D
-
G
--
Y
D
A
A
A
N
T
D
F
K
ADN
S
S
S
D
I
L
D
A
PS-------------
43
SP3
48.97
21%
-1
- C6 -
-
1H8L
1
CBPD_LOPSP
A:
[302-380]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
I
W
G
F
--
V
L
D
----
A
T
D
G
R
G
I
L
--
N
A
T
I
S
-----------------
V
--
A
----
D
I
N
H
P
V
T
T
Y
K
D
G
D
-
Y
W
R
L
L
---------
V
------
Q
-
G
-
T
Y
K
V
-----------
T
--
A
S
--------
A
R
----
G
------
Y
D
P
V
T
K
T
V
E
------
V
D
S
K
G
------------------
G
V
Q
V
N
----------------
F
T
L
S
R
T----------------------------
34
SP3
47.80
14%
107
- C4 -
-
1AW0
-
?
?:
[1-72]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L
T
Q
E
T
V
--
I
N
I
----
D
G
M
T
C
N
S
---
C
-
V
Q
S
-----------------
I
--
E
--
G
V
I
S
K
K
P
-----------------------
G
------
V
-
K
-
S
-
I
R
-----------
V
------------
S
L
----
A
------
N
S
--
N
G
T
V
E
------
Y
D
P
L
L
-----
T
S
----
P
------
E
T
L
R
G
A
I
----
E
--
D
M
G
--
F
D
A
T
L
S
D
-----------------------------
32
Fugue
46.24
17%
31
- C2 -
-
5CZL
-
?
A:
[23-337]
LPRAWADT
A
W
E
S
Y
K
S
R
FMMADGRIVDTGNGSVSH
T
E
G
Q
G
F
A
M
L
L
A
V
A
K
ND
R
P
A
F
D
K
L
W
Q
W
T
D
K
T
LRNKDNGLFYWRYNPVAPDPIADKNDA
T
D
G
D
T
L
I
A
W
A
L
L
R
A
Q
Q
Q
WGD
K
S
Y
G
I
A
S
D
A
I
T
A
S
L
L
K
ST
V
I
T
F
AG
H
Q
V
M
L
PGAKGFNRND
H
V
N
L
N
PSYFI
F
P
A
W
Q
A
F
A
A
R
T
HL
T
A
W
R
K
L
Q
S
D
G
K
A
L
L
G
K
MAWGKAQLP
S
D
W
V
A
--
L
R
A
----
D
G
R
M
E
P
A
K
--
E
W
P
P
R
-----------------
M
--
S
--
Y
D
A
I
R
I
P
L
Y
L
S
W
A
D
P
-
Q
S
--
A
---------
L
------
L
-
T
-
P
-
W
K
-----------
S
--
W
F
--------
Q
S
Y
PR-
L
------
Q
T
--
P
A
W
V
N
------
V
N
T
N
D
-----
V
A
----
P
------
W
F
M
T
G
G
L
----
L
--
A
-
V
--
R
D
L
T
T
G
E
AQDD
P
Q
L
S
AQDD
Y
Y
S
A
S
L
K
M
L
V
W
L
A
K
N
DR
7
PsiBlast_PDB
44.13
36%
8
- C3 -
-
4NBM
-
UVR8_ARATH
A:
[273-305]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
R
H
T
M
-
A
L
--
T
---------
S
------
D
-
G
-
K
-
L
Y
-----------
G
--
W
G
--------
W
N
----
K
------
F
G
--
Q
V
G
V
G
------
N
N
L
D
Q
-----
C
-------------------------------------------------------------------
39
SP3
43.49
14%
9
- C4 -
-
1USM
-
?
A:
[1-80]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
----
D
W
E
E
R
K
R
L
--
V
K
T
F
A
-----------------
F
--
P
-----------
N
F
R
E
A
L
-
D
F
--
A
---------
N
------
R
V
G
-
A
-
L
A
-----------
E
R
E
N
H
--------
H
P
R
L
T
V
E
------
W
G
--
R
V
T
V
E
------
W
W
T
H
S
-----
A
G
GVT
E
K
------
D
R
E
M
A
R
L
----
T
--
D
-------
A
L
L
Q
R----------------------------