@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : MGG_08992T0: (2018-03-19 )
PWDERVCQVTVFYPGKETGTLMPHLMEPEEPIVIPKINGKRYYAVSDANCKYKRYDVDPEGNPWPSGLRVKGVAVKLWKEKLD
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10...-.....20-......------...-30------------.......--------.40-.........50------..-----......60........70-.........80..-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PWDE
R
V
C
Q
V
T
V
F
YP-GKETGT--LMPHLM------EPE-E
P
------------
I
V
I
P
KIN--------G
K
--
R
Y
Y
A
VSDAN
C
K
------
Y
K
-----RYDVDPEGNPWPSG
L
R
V
--
K
G
V
A
V
K
L
W
K
E
KLD-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
96.67
30%
0
- C- -
-
5A31
-
APC1_HUMAN
A:
[702-668]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
L
C
Q
R
T
M
A
L
P
V
G
R
G
M
F
T
--
L
F
S
Y
H
P
------
V
P
T
-
E
P
------------
L
P
I
P
K
L
N
L
T
------
G
R
--
A
P
P
R
N
T
T
V
D
L
N
------
S
G
-----
N
I
D
V
P
P
N
M
T
S
W
A
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
88.63
30%
-
- C12 -
-
5L9T
-
APC1_HUMAN
A:
[1072-1246]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
L
C
Q
R
T
M
A
L
P
V
G
R
G
M
F
T
--
L
F
S
Y
H
P
------
V
P
T
-
E
P
------------
L
P
I
P
K
L
N
L
T
------
G
R
--
A
P
P
R
N
T
T
V
D
L
N
------
S
G
-----
N
I
D
V
P
P
N
M
T
S
W
A
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
88.63
30%
-
- C12 -
-
5L9U
-
APC1_HUMAN
A:
[1072-1251]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
L
C
Q
R
T
M
A
L
P
V
G
R
G
M
F
T
--
L
F
S
Y
H
P
------
V
P
T
-
E
P
------------
L
P
I
P
K
L
N
L
T
------
G
R
--
A
P
P
R
N
T
T
V
D
L
N
------
S
G
-----
N
I
D
V
P
P
N
M
T
S
W
A
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
88.63
30%
-
- C12 -
-
5KHR
-
APC1_HUMAN
A:
[1072-1222]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
L
C
Q
R
T
M
A
L
P
V
G
R
G
M
F
T
--
L
F
S
Y
H
P
------
V
P
T
-
E
P
------------
L
P
I
P
K
L
N
L
T
------
G
R
--
A
P
P
R
N
T
T
V
D
L
N
------
S
G
-----
N
I
D
V
P
P
N
M
T
S
W
A
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
88.60
30%
-
- C12 -
-
5KHU
-
APC1_HUMAN
A:
[1072-1242]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
L
C
Q
R
T
M
A
L
P
V
G
R
G
M
F
T
--
L
F
S
Y
H
P
------
V
P
T
-
E
P
------------
L
P
I
P
K
L
N
L
T
------
G
R
--
A
P
P
R
N
T
T
V
D
L
N
------
S
G
-----
N
I
D
V
P
P
N
M
T
S
W
A
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
48
SP3
57.65
20%
65
- C7 -
-
1SOU
-
?
A:
[1-194]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ML
K
S
E
L
R
K
K
V
L
H
K
R
I
N
LSEE
E
R
R
R
L
S
E
K
V
I
S
N
L
K
S
L
P
E
F
K
K
S
K
K
V
A
L
Y
C
P
I
K
G
E
V
D
L
TP
L
F
P
E
V
L
------
K
-
E
-
K
E
------------
L
I
L
P
K
V
E
--------
G
N
E
I
S
L
Y
R
V
H
S
P
A
---------------
C
L
G
V
G
A
F
G
I
M
E
P
V
E
--------
G
E
R
V
N
P
E
D
V
D
F
I
A
V
P
G
VAFDLEGYRLGFGKGY
Y
D
R
L
L
K
R
V
K
G
L
K
V
G
V
A
Y
SFQVFERLPRDAWDIPVD
V
L
V
T
EK
N
V
R
R
LRDGRSLEHHHHHH----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
56.04
30%
45
* C12 *
-
5LCW
-
APC1_HUMAN
A:
[1072-1213]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
L
C
Q
R
T
M
A
L
P
V
G
R
G
M
F
T
--
L
F
S
Y
H
P
------
V
P
T
-
E
P
------------
L
P
I
P
K
L
N
L
T
------
G
R
--
A
P
P
R
N
T
T
V
D
L
N
------
S
G
-----
N
I
D
V
P
P
N
M
T
S
W
A
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
54.64
30%
60
- C12 -
-
5G05
-
APC1_HUMAN
A:
[1072-1166]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
L
C
Q
R
T
M
A
L
P
V
G
R
G
M
F
T
--
L
F
S
Y
H
P
------
V
P
T
-
E
P
------------
L
P
I
P
K
L
N
L
T
------
G
R
--
A
P
P
R
N
T
T
V
D
L
N
------
S
G
-----
N
I
D
V
P
P
N
M
T
S
W
A
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
54.22
30%
61
- C12 -
-
4UI9
-
APC1_HUMAN
A:
[1072-1209]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
L
C
Q
R
T
M
A
L
P
V
G
R
G
M
F
T
--
L
F
S
Y
H
P
------
V
P
T
-
E
P
------------
L
P
I
P
K
L
N
L
T
------
G
R
--
A
P
P
R
N
T
T
V
D
L
N
------
S
G
-----
N
I
D
V
P
P
N
M
T
S
W
A
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
53.46
30%
66
- C12 -
-
5G04
-
APC1_HUMAN
A:
[1072-1210]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
L
C
Q
R
T
M
A
L
P
V
G
R
G
M
F
T
--
L
F
S
Y
H
P
------
V
P
T
-
E
P
------------
L
P
I
P
K
L
N
L
T
------
G
R
--
A
P
P
R
N
T
T
V
D
L
N
------
S
G
-----
N
I
D
V
P
P
N
M
T
S
W
A
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
42
SP3
52.40
19%
121
- C10 -
-
1H6L
-
PHYT_BACSD
A:
[1-353]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KLSD
P
Y
H
F
T
V
N
A
AAETEPVDTAGDAA
D
D
P
A
I
W
L
D
PKNPQN
S
K
L
I
T
T
NKK
S
G
L
A
V
Y
S
LEGKMLHSYHTGKLN
N
V
D
I
R
Y
DFPLNG
K
K
V
D
I
A
A
A
S
N
R
S
E
G
K
N
T
I
E
I
Y
A
I
-
D
G
K
N
G
T
--
L
-
Q
S
I
T
------
D
P
N
-
R
P
IASAIDEV
Y
G
F
S
L
Y
H
S
Q
K
T
--------
G
K
--
Y
Y
A
M
V
T
G
K
E
G
E
------
F
E
-----
Q
Y
E
L
N
A
D
K
N
G
Y
I
S
G
K
K
V
--
R
A
F
-------
K
M
N
SQT
E
G
M
A
A
D
DEYG
S
L
Y
I
A
EED
E
A
I
W
K
F
S
AEPDGGS
N
G
T
V
IDRADGRHLTPDI
E
G
L
T
I
Y
Y
A
A
DG
K
G
Y
L
L
A
S
SQGNS
S
Y
A
I
Y
E
RQGQNKYV
A
D
F
Q
I
T
D
GPE
T
D
G
T
S
DTD
G
I
D
V
L
GFGLGPEYPF
G
L
F
V
A
Q
N
G
E
N
I
D
HG
Q
K
A
N
Q
N
F
K
M
V
P
W
E
R
I
A
D
K
I
G
F
H
P
Q
VNKQVDPR
K
M
T
D
RS-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
51.68
41%
-401
* C11 *
-
3WW3
-
?
B:
[147-169]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
F
S
P
M
P
E
G
S
P
W
P
E
G
V
A
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
Fugue
50.14
23%
35
* C7 *
-
4FYP
-
VSP1_ARATH
A:
[34-261]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------G
L
S
I
N
Y
PN
C
R
S
W
H
L
G
V
E
T
SNIINFDTVPANC
K
A
Y
V
E
D
Y
L
ITSK
Q
Y
Q
Y
D
S
K
T
V
N
K
E
A
Y
F
Y
A
K
G
LALKNDTV
N
V
W
I
F
D
L
DDTLLSS
I
P
Y
Y
A
K
Y
GYGT
E
N
T
A
PG
A
Y
W
S
W
L
E
S
G
E
S
T
P
G
-
L
P
E
T
L
H
--
L
Y
E
N
L
L
------
E
L
G
I
E
P
------------
I
I
I
S
D
R
W
---------
K
--
K
L
S
E
V
T
V
E
N
L
K
A
V
GVTK
W
K
-----
H
L
I
L
K
P
N
G
S
K
L
T
Q
V
V
Y
K
--
S
K
V
R
N
S
L
V
K
K
G
Y
N
IV
G
N
I
G
DQWADLVED
T
P
G
R
V
F
K
L
P
N
PLYY
V
P
S
L
E
H
H
H
H-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
49.81
35%
-401
- C11 -
-
4Q0V
1
?
A:
[151-167]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
F
S
G
M
P
V
G
S
P
W
P
E
G
V
A
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
47.20
25%
125
- C8 -
-
4D6W
-
GLYCO_CHAV
A:
[1-415]
Y
L
S
I
A
F
PENTKLD
W
K
P
V
T
K
N
T
R
Y
C
PPG
L
Q
E
E
S
F
L
S
S
T
P
IGATPSKS
D
G
F
L
C
H
A
A
K
W
V
T
T
C
D
F
R
WYG
P
K
Y
I
T
H
S
I
H
N
I
K
P
T
R
S
D
C
D
T
A
L
A
S
Y
K
S
GTLVSLGFPPESCGYASV
T
D
S
E
F
L
V
I
M
I
T
P
H
H
V
G
V
DDYRG
H
W
V
D
PLFVGGECDQS
Y
C
D
T
IHNS
S
V
W
I
P
ADQTKKNICG
Q
S
F
T
P
L
T
V
T
V
A
Y
D
KTKEIAAGG
I
V
F
K
S
KYHSHMEGAR
T
C
R
L
S
Y
CG
R
N
G
I
K
F
PNG
E
W
V
S
L
D
VKTRIQEKHLLPLFKECPAG
T
E
V
R
S
T
L
Q
S
D
G
A
Q
V
L
T
S
E
I
Q
R
I
L
D
Y
S
L
C
Q
N
T
W
D
K
V
-
E
R
K
E
-
P
--
L
S
P
L
D
L
S
Y
L
ASK
S
P
G
-
K
G
------------
L
A
Y
T
V
I
N
--------
G
------
T
L
S
F
A
H
T
R
------
Y
V
-----
R
M
W
I
D
G
P
V
L
K
E
P
K
G
K
R
E
SP
S
G
I
S
S
D
I
W
T
Q
W
F
K
Y
GD
M
E
I
G
P
NGLLKTAG
G
Y
K
F
P
W
H
L
I
G
M
G
I
V
D
N
E
L
H
E
L
S
E
A
N
P
L
D
H
P
Q
L
P------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
41
Fugue
47.15
24%
72
- C10 -
-
4UNM
-
?
A:
[8-615]
----------------------------------------------------------------------------------------------------------------------------------------------------K
Y
H
Q
Y
K
I
N
Q
P
E
Y
K
A
A
N
G
K
W
E
I
I
E
F
PEKYRQNTI
H
A
A
L
L
RTG
K
V
L
M
V
A
GSGNN
Q
D
N
S
D
D
KQ
Y
D
T
R
I
W
D
PVKG
T
I
K
K
V
PTPSDLFC
T
G
H
T
Q
L
ANG
N
L
L
I
A
G
GTKRYEKLKGDVT
K
A
G
G
L
M
V
V
H
N
EN
P
D
K
P
I
T
L
P
A
G
T
K
F
T
-
G
K
E
N
G
K
------
T
F
------
V
S
K
-
D
P
------------
V
L
V
P
R
A
E
KVRND
P
G
L
G
R
--
I
Y
V
E
A
Q
K
S
G
S
A
------
Y
E
TG
T
E
D
N
Y
R
V
--
Q
G
L
S
G
A
D
A
R
N
T
--
Y
G
I
A
Q
K
L
A
L
D
K
K
D
F
Q
G
I
R
D
A
F
E
F
D
PVAE
K
Y
I
K
V
DPMH
E
A
R
W
Y
P
T
L
T
T
L
GDG
K
I
L
S
V
S
G
L
DDIGQLVPGK
N
E
V
Y
D
PKTK
A
W
T
Y
T
D
K
V
R
Q
F
P
T
YPA
L
F
L
M
QNG
K
I
F
Y
SGANAGYGPDDVGR
T
P
G
V
W
DVETN
K
F
T
K
V
P
GMSDANMLET
A
N
T
V
LLPPAQDE
K
Y
M
V
I
G
GGGVGESKLSSE
K
T
R
I
A
D
LKAD
D
P
K
F
V
D
G
P
SLE
K
G
T
R
Y
P
Q
A
S
I
L
PDD
S
V
L
V
S
G
G
S
QDYRGRGDSNIL
Q
A
R
L
Y
H
PDTN
E
F
E
R
V
A
DPL
V
G
R
N
Y
H
S
G
S
I
L
L
PDG
R
L
M
F
F
G
S
D
S
LYADKANT
K
P
G
K
F
EQ
R
I
E
I
Y
T
P
P
Y
L
Y
R
DS
R
P
D
L
S
GGP
Q
T
I
A
RG
G
S
G
T
F
T
S
RAASTVKKVRLIRPSASTHVTDVD
Q
R
S
I
A
L
D
F
K
A
D
GD
K
L
T
V
T
V
P
SGKNLVQS
G
W
Y
M
M
F
V
T
D
GEGTPSK
A
E
W
V
R
V
P
29
HHSearch
47.14
47%
-303
- C6 -
-
4QXL
-
?
A:
[41-57]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
W
-----
R
Y
E
L
N
G
---
P
T
P
A
G
L
R
V
--
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
44.36
19%
39
* C8 *
-
4R6H
-
MSME_BACSU
A:
[28-421]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ADTA
K
K
T
L
T
I
Y
S
TMST
D
S
E
R
D
T
F
R
K
L
A
A
A
F
E
K
E
H
S
D
I
H
V
S
L
H
F
P
-
G
N
D
Y
E
N
--
M
M
R
V
R
M
------
A
A
N
-
D
L
------------
P
D
L
F
D
T
H
--------
G
W
---------
G
K
I
R
------
Y
G
-----
E
Y
T
A
D
L
R
D
----------------
M
K
W
T
Q
D
L
D
PNLNSILKNKSGKVYAYPI
N
Q
A
K
D
G
L
AYN
R
N
I
L
D
R
Y
GIAPPET
M
D
D
F
I
K
A
L
R
T
I
K
E
K
S
K
GSIVPFWFAGYD
K
S
S
F
A
Q
Y
Y
D
Q
F
A
T
P
L
LITDPAHNE
K
K
Q
L
I
N
GTFQWSKF
T
Y
L
S
E
I
L
K
Q
M
Q
K
E
KLINIDAVTAKKSQ
L
I
E
L
M
A
Q
NKIAFTMQGGT
L
G
Q
D
V
A
Q
I
NPN
V
K
V
G
I
I
P
TPAIHPG
D
D
P
I
W
I
G
GER
Y
T
L
A
A
W
KDSPQ
L
K
E
A
K
D
F
I
A
F
M
A
R
P
A
N
A
K
Q
M
A
E
A
T
SLPSGLTNVKADIFY
A
N
D
Y
E
Y
Y
QD
V
K
V
E
P
YFDRLYLPNG
M
W
D
V
L
G
T
V
G
Q
E
L
A
A
DILA
P
Q
D
I
S
Q
K
L
G
R
E
Y
K
R
L
R
E
Q
S
E
T-----------------------------------------------------------------------------------
38
Fugue
42.36
15%
-46
- C8 -
-
4V0B
-
FTSH_ECOLI
A:
[8-70]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
-
K
V
D
Y
S
T
--
F
L
Q
E
V
N
------
N
D
Q
---------------
V
R
E
A
R
I
N
--------
G
R
--
E
I
N
V
T
K
K
D
S
N
R
------
Y
T
-----
T
Y
-
I
P
V
Q
D
P
K
L
L
D
N
L
L
T
--
K
N
V
K
V
V
G
E
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
47
SP3
39.11
12%
70
- C- -
-
1JAT
-
MMS2_YEAST
B:
[2-137]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SKVP
R
N
F
R
L
L
E
E
L
E
K
G
E
KES
C
S
Y
G
L
ADSDDITMT
K
W
N
G
T
I
L
G
PPHS
N
H
E
N
R
I
Y
S
L
S
I
D
C
G
---
P
N
Y
P
--
D
S
P
P
K
V
------
T
F
I
-
S
K
------------
I
N
L
P
C
V
N
--------
P
T
-------
T
G
E
V
Q
T
---------------
D
F
H
T
L
R
D
-
W
K
R
A
Y
T
M
--
E
T
L
L
L
D
L
R
K
E
M
A
T
P
A
N
K
K
L
R
Q
P
KEGETF----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------