@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : MGG_09675T0: (2018-03-19 )
GAKCRVDLKHGQAVVSSFEVLAGSRKTVKEEGFSWTCSTERDTCNAVNCILPKGLTAVGVQISSGKPKDRAAEESAARQAAAPKVVALWLLENVYSGRKWPRIFKTGGHLGILWGASG
Atome Classification :
(20 SA)
-------------------------------------------------------...--......10........20.-.--..------------....30----.----.......40---......-----.-..50----....----....60......-..70.--.......80---..---..---.....90.---...-.--..--------.100....--...110-.......------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-------------------------------------------------------GA
K
--
C
R
V
D
LKH
G
Q
A
V
V
S
S
F
E
V
L
A-G--SR------------K
T
V
KEE----G----
F
S
W
T
CSTE----RDTCN
A
-----
V
-
N
C
IL----PKG
L
----
T
A
V
G
V
Q
ISSGKP-KDR
A
A
--
E
E
S
A
A
RQA----AA---
P
K
---
V
V
A
L
W
L
L
E
---
N
V
Y-S--GR--------KW
P
R
I
FKT--GG
H
L
G
--
I
L
WGASG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
SP3
55.18
22%
35
- C4 -
-
1DW0
1
SHP_RHOS4
A:
[1-112]
-------------------------------------------------------
G
D
T
--
S
------
P
A
Q
L
I
A
G
Y
E
A
A
A
-
G
--
A
P
------------
A
D
-
A
E
R
----
G
R
A
L
F
L
S
T
Q
T
G
G
K
----
P
D
T
P
S
C
-----
T
-
T
C
-
H
----
G
A
D
V
----
T
R
A
G
-
Q
T
R
T
G
K
E
-
I
A
P
L
A
--
P
S
A
T
P
D
R
F
----
T
D
---
S
A
---
R
V
E
K
W
L
G
R
---
N
C
N
-
S
V
I
G
R
--------
D
-----
C
T
--
P
G
E
K
A
D
L
L
A
W
L
A
A
Q
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
52.72
20%
46
- C8 -
-
3ALM
2
?
A:
[10-379]
K
T
R
R
A
E
V
A
G
GG
F
A
G
L
T
A
A
I
A
L
K
Q
N
GWD
V
R
L
H
E
KSS
E
L
R
A
F
GA
G
I
Y
L
W
H
N
G
L
R
V
L
E
G
L
G
--
A
L
D
D
V
L
Q
G
S
H
T
P
P
T
Y
E
T
W
M
-
H
--
N
K
------------
S
V
S
K
E
T
FN--
G
----
L
P
W
R
I
M
T
R
----
S
H
L
H
D
A
-----
L
-
V
N
R
A
----
R
A
--------
L
G
V
D
I
S
V
N
S
E
-
A
V
A
A
D
--
P
V
G
R
L
T
L
Q
----
T
G
---
E
V
---
L
E
A
---------------------------------------
D
--
L
I
V
G
A
D
G
VGS
K
V
R
D
S
I
GFKQD
R
W
V
S
K
D
G
L
I
R
L
I
V
P
RMKKELGHGEWDNTIDMWNFWPRVQRILYSPCNEN
E
L
Y
L
G
L
M
A
P
AADPRGSSVPID
L
E
V
W
V
E
M
F
PFL
E
P
C
L
I
E
A
A
K
LKTARY
D
K
Y
E
T
T
K
L
DSWTRGK
V
A
L
V
G
DAA
H
A
M
A
PALAQ
G
A
G
C
A
M
V
N
A
F
S
L
S
Q
D
L
E
EGSS
V
E
D
A
L
V
A
W
E
T
R
I
R
P
I
T
D
R
C
Q
A
L
S
G
D
Y
A
A
N
RSLSKGNMFTPAALEAARYDPLRRVYSWPQ
19
Fugue
47.04
23%
-445
- C8 -
-
4RVY
-
PSBT_THEEB
T:
[1-30]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
T
I
T
Y
V
F
----
I
F
---
A
C
---
I
I
A
L
F
F
F
A
---
I
F
F
-----
R
--------
E
P
P
R
I
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
45.69
18%
-19
- C8 -
-
1QYS
-
?
A:
[3-94]
-------------------------------------------------------
D
I
Q
--
V
Q
V
N
I
D
D
N
G
-------------------------------
K
N
F
----
D
----
Y
T
Y
T
V
T
T
E
S
E
L
-
Q
K
V
L
N
E
-----
L
M
D
Y
I
K
----
K
Q
G
A
----
K
R
V
R
I
S
I
T
A
R
T
K
-
K
E
A
E
K
--
F
A
A
I
L
I
K
V
----
F
A
---
E
---------
L
G
Y
---
N
D
I
-
N
--
V
T
--------
F
D
G
D
T
V
T
V
--
E
G
Q
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
SP3
44.71
13%
50
- C4 -
-
1JD5
-
A:
[14-118]
-------------------------------------------------------
G
N
Y
FP
Q
Y
P
E
Y
A
I
E
T
A
R
L
R
T
F
E
A
W
P
-
R
--
N
L
------------
K
Q
K
P
H
Q
L
A
E
A
G
----
F
F
Y
T
--
G
V
----
G
D
R
V
R
C
-----
F
-
S
C
-----------------
G
G
G
L
M
D
W
N
D
-
N
D
E
P
W
--
E
Q
H
A
L
W
L
S
----
Q
C
---
R
F
---
V
K
L
M
K
G
Q
L
---
Y
I
D
-
T
--
V
A
--------
A
K
P
V
L
A
E
E
--
K
E
E
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
SP3
44.41
19%
80
- C6 -
-
1QBA
-
?
?:
[754-858]
-------------------------------------------------------
G
E
T
--
H
F
V
D
T
Q
A
L
E
K
D
W
L
R
F
A
N
I
L
-
G
--
Q
R
------------
E
L
A
K
L
D
K
G
--
G
----
V
A
Y
R
L
P
V
P
G
A
R
V
A
G
G
K
L
E
-----
A
-
N
I
A
L
----
P
-
G
L
-------
G
I
E
Y
S
T
D
G
G
-
K
Q
W
Q
R
--
Y
D
A
K
A
K
P
A
----
V
S
---
G
E
---
V
----
Q
V
R
---
S
V
S
P
D
--
G
K
--------
R
Y
S
R
A
E
K
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
SP3
44.30
17%
80
* C4 *
-
1E8E
1
CYCA_METME
A:
[1-124]
---------------------------------------------------------------
D
V
T
N
A
E
K
L
V
Y
K
Y
T
N
I
A
-
H
--
S
A
NPMYEAPSITDG
K
I
F
F
N
R
----
K
----
F
K
-
T
P
S
G
K
----
E
A
A
C
A
S
--------
C
-
H
----
T
N
N
P
----
A
N
V
G
K
N
I
V
T
G
K
E
I
P
P
L
A
P
--
R
V
N
T
K
R
F
T
----
D
I
---
D
K
----
V
E
D
E
F
T
K
---
H
C
N
-
D
I
L
G
A
--------
D
-----
C
S
--
P
S
E
K
A
N
F
I
A
Y
L
L
T
E
TKPTK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
SP3
43.26
15%
48
* C6 *
-
1TOL
-
A:
[125-215]
------------------------------------------------------------------
S
G
A
D
I
N
N
Y
A
G
Q
I
K
-
S
A
I
E
S
------------
K
F
Y
D
A
S
----
S
----
Y
------
A
----
G
K
T
C
T
L
-----
R
-
I
K
L
A
----
P
D
G
-----
M
L
L
D
I
K
P
E
G
G
D
P
-
A
L
C
Q
A
--
A
L
A
A
A
K
L
A
----
K
I
---
P
K
---
P
P
S
Q
A
V
Y
E
---
V
F
------
K
--------
N
A
P
L
D
F
K
P
--
A
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
SP3
41.97
11%
-21
* C8 *
-
1JQL
-
HOLA_ECOLI
B:
[1-140]
-----------------------------------------M
I
R
L
Y
PEQLRAQLN
E
G
L
--
R
A
A
Y
L
L
L
G
N
D
P
L
L
L
Q
E
S
Q
D
-
A
--
V
R
------------
Q
V
A
A
A
Q
----
G
----
F
-----
E
E
----
H
H
T
F
S
I
DPNTD
W
-
N
A
I
F
S
L
C
Q
A
M
S
L
FA
S
R
Q
T
L
L
L
L
L
P
E
N
G
P
-
N
A
A
I
N
--
E
--
Q
L
L
T
L
----
T
G
L
LH
D
D
---
L
L
L
I
V
R
G
N
---
K
L
S
-
K
--
A
Q
--------
E
N
A
A
W
F
T
A
--
L
A
N
R
S
--
V
Q
V
T
C
Q
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
41.81
23%
-207
- C- -
-
5E79
-
PSBT_THEEB
T:
[1-30]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
T
I
T
Y
V
F
----
I
F
---
A
C
---
I
I
A
L
F
F
F
A
---
I
F
F
-----
R
--------
E
P
P
R
I
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
41.71
23%
-204
- C- -
-
5E7C
-
PSBT_THEEB
T:
[1-30]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
T
I
T
Y
V
F
----
I
F
---
A
C
---
I
I
A
L
F
F
F
A
---
I
F
F
-----
R
--------
E
P
P
R
I
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
41.05
17%
28
- C8 -
-
2CTO
-
MAEL_HUMAN
A:
[1-93]
-------------------------------------------------------
G
S
S
--
G
S
S
G
M
P
N
R
K
A
S
R
N
A
Y
Y
F
F
V
Q
E
--
K
I
------------
P
E
L
R
R
R
----
G
--------------------------------
L
----
P
V
A
R
----
V
A
D
A
I
P
Y
C
S
S
D
W
-
A
L
L
R
E
--
E
E
K
E
K
Y
A
E
----
M
A
---
R
E
---
W
R
A
A
Q
G
K
D
---
P
G
P
-
S
--
E
K
--------
Q
K
P
V
-
F
T
S
--
G
P
S
S
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
40.37
40%
-141
- C7 -
-
4MAK
1
CAS2_ECOLI
A:
[19-61]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
I
W
L
L
E
VRA
G
V
Y
-
V
--
G
D
V
S
A
K
I
R
E
M
I
W
E
Q
I
A
G
L
AE
E
G
N
V
V
--
M
A
W
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
37.01
25%
-50
- C8 -
-
2F95
-
HTR2_NATPH
B:
[24-76]
-------------------------------------------------------------------------------------------------------------------------------------------
I
F
----
V
G
A
L
----
T
V
L
F
G
A
I
A
Y
G
E
V
-
T
A
A
A
A
T
G
D
A
A
A
V
Q
E
A
----
A
V
---
S
A
---
I
L
G
L
I
I
L
L
---
G
I
N
-
L
--
G
L
--------
V
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
36.75
37%
-176
- C9 -
-
1LUP
-
MTX2_GRARO
A:
[4-22]
-----------------------------------------------------------------------------------------------------------
K
----
W
M
W
T
C
D
E
E
----
R
K
C
C
E
G
-----
L
-
V
C
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
SP3
36.41
10%
-7
- C3 -
-
1KRH
1
BENC_ACIAD
A:
[2-105]
--------------------------------------------------------
S
N
--
H
Q
V
A
L
Q
F
E
D
G
V
T
R
F
I
C
I
A
Q
-
G
--
E
T
L
S
----------
D
A
A
Y
R
Q
----
Q
----
I
N
I
P
M
D
C
R
----
E
G
E
C
G
T
-----
C
-
R
A
F
C
----
E
S
G
N
----
Y
D
M
P
E
D
--
N
Y
I
E
-
D
A
L
T
P
--
E
E
A
Q
Q
G
Y
V
LACQ
C
R
---
P
T
S
D
A
V
F
Q
I
---------------
Q
--------
A
S
S
E
V
C
K
T
--
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
SP3
35.41
13%
22
- C- -
-
1AY7
-
BARS_BACAM
B:
[1-89]
--------------------------------------------------------
K
K
--
A
V
I
N
G
E
Q
----
I
R
S
I
S
D
L
H
------------------
Q
T
L
K
K
E
L
---
A
----
L
P
E
--
Y
Y
G
----
E
N
L
-
D
A
-----
L
-
W
D
C
L
-----
T
G
W
----
V
E
Y
P
L
V
L
------
E
W
R
Q
F
--
E
Q
S
K
Q
L
T
E
----
N
G
---
A
E
---
S
V
L
Q
V
F
R
E
---
A
K
A
-
E
--
G
C
--------
D
I
-
T
I
I
L
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
34.58
33%
41
* C7 *
-
4UI9
-
?
U:
[1-24]
----------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
R
R
P
-
C
S
C
A
L
--
R
P
P
A
A
A
A
A
----
A
A
---
A
A
---
A
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
SP3
33.38
12%
49
- C4 -
-
1OXN
1
BIRC7_HUMAN
A:
[32-130]
-------------------------------------------------A
G
A
T
L
S
R
G
P
--
A
F
P
G
M
G
S
E
E
L
R
L
A
S
F
Y
D
W
P
-
L
--
T
A
------------
E
V
P
P
E
L
L
A
A
A
G
----
F
F
H
T
--
G
H
----
Q
D
K
V
R
C
-----
F
-
F
C
-----------------
Y
G
G
L
Q
S
W
K
R
-
G
D
D
P
W
--
T
E
H
A
K
W
F
P
----
S
C
---
Q
F
---
L
L
R
S
K
G
R
D
---
F
V
H
-
S
--
V
Q
--------
E
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
33.37
37%
-188
* C9 *
-
2N9T
-
TXPR2_THRPR
A:
[4-22]
-----------------------------------------------------------------------------------------------------------
K
----
W
M
W
T
C
D
S
E
----
R
K
C
C
E
G
-----
M
-
V
C
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------