@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : MGG_10975T0: (2018-03-19 )
TPMLDSLIEHRSPIFCLVQMCEMLDGGKKYCTRWYKVYPGGSHTFQEGGRDTITVTFDNKCKKSLSGSTKKRSIGFPTQLVYRSDDPILAGISKIFEPGRAPNYH
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------.........10........20........-30...------......40--......-..50.-.....-----..60....---------....70...--....------------.80.....--...90.-.......100...---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------T
P
M
L
D
S
L
I
E
HR
S
P
I
F
C
L
V
Q
M
C
E
M
LDG
G
K
K
-
Y
-
C
T
R
------
W
Y
K
VYPGG--SH
T
F
QE-GGR
D
T
-
I
T
V
TF-----D
N
K
C
K
K
SL---------SGSTKKRSI--GFP
T
------------
Q
L
V
YRSD
D
--
P
I
L
A
G
I
-
S
K
IFEPGRAPNYH---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
72.12
35%
0
- C- -
-
5T6L
4
?
H:
[90-149]
------------------------------------------------------------------------------------------------------------------------------
M
E
D
S
G
L
Y
-
F
-
C
A
R
TGKYYD
F
W
S
G
Y
P
P
G
--
E
E
Y
F
Q
D
-
W
G
R
G
T
L
V
T
V
S
-----------------------
S
A
S
T
K
G
P
S
V
---
F
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
60
SP3
60.53
24%
42
- C13 -
-
1EAX
1
A:
[1-241]
VVGGTDADEGEWPW
Q
V
S
L
H
A
LGQGHI
C
G
A
S
L
ISPN
W
L
V
S
A
AHCYIDDRGFRYSDPTQ
W
T
A
F
L
GLHDQSQRSAPG
V
Q
E
R
R
L
K
R
I
I
S
HPFFNDFTFDYD
I
A
L
L
E
L
E
K
P
A
--
E
Y
S
S
M
V
R
P
I
-
C
L
P
D
A
S
H
V
F
P
A
G
K
A
I
W
-
V
T
G
------
W
G
H
T
Q
Y
G
G
T
G
A
L
I
L
Q
K
-
G
---
E
-
I
R
V
I
N
-----
Q
T
T
C
E
N
L
L
---------
P
Q
Q
I
T
P
R
M
M
C
V
G
F
L
S
GG
V
D
S
C
QGDSGG
P
L
S
S
V
E
A
D
G
R
I
F
Q
A
G
V
V
S
W
G
D
G
C
A
Q
-
R
N
K
P
G
V
Y
T
R
L
PLF
R
D
W
I
K
E
N
TGV--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
56.90
27%
-10
- C11 -
-
1EW2
-
PPB1_HUMAN
A:
[199-272]
------------------------------------------------------------------------------------------------------------------------------
I
L
G
G
G
R
K
-
Y
-
M
F
R
------
M
G
T
P
D
P
E
Y
--
P
D
D
Y
S
Q
-
G
G
----
T
R
L
D
G
-----
K
N
L
V
Q
E
W
L
---------
A
K
R
Q
G
A
R
Y
V
--
W
N
R
T
------------
E
L
M
Q
A
S
L
D
--
P
S
V
T
H
L
-
M
G
L
F
E
P
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
56.81
27%
-5
- C11 -
-
2GLQ
1
PPB1_HUMAN
A:
[199-272]
------------------------------------------------------------------------------------------------------------------------------
I
L
G
G
G
R
K
-
Y
-
M
F
R
------
M
G
T
P
D
P
E
Y
--
P
D
D
Y
S
Q
-
G
G
----
T
R
L
D
G
-----
K
N
L
V
Q
E
W
L
---------
A
K
R
Q
G
A
R
Y
V
--
W
N
R
T
------------
E
L
M
Q
A
S
L
D
--
P
S
V
T
H
L
-
M
G
L
F
E
P
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
56.59
27%
-5
- C11 -
-
1ZEF
2
PPB1_HUMAN
A:
[199-272]
------------------------------------------------------------------------------------------------------------------------------
I
L
G
G
G
R
K
-
Y
-
M
F
R
------
M
G
T
P
D
P
E
Y
--
P
D
D
Y
S
Q
-
G
G
----
T
R
L
D
G
-----
K
N
L
V
Q
E
W
L
---------
A
K
R
Q
G
A
R
Y
V
--
W
N
R
T
------------
E
L
M
Q
A
S
L
D
--
P
S
V
T
H
L
-
M
G
L
F
E
P
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
56.35
27%
-7
- C11 -
-
1ZED
2
PPB1_HUMAN
A:
[199-272]
------------------------------------------------------------------------------------------------------------------------------
I
L
G
G
G
R
K
-
Y
-
M
F
R
------
M
G
T
P
D
P
E
Y
--
P
D
D
Y
S
Q
-
G
G
----
T
R
L
D
G
-----
K
N
L
V
Q
E
W
L
---------
A
K
R
Q
G
A
R
Y
V
--
W
N
R
T
------------
E
L
M
Q
A
S
L
D
--
P
S
V
T
H
L
-
M
G
L
F
E
P
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
56.21
35%
27
- C15 -
-
5T80
1
?
H:
[90-141]
------------------------------------------------------------------------------------------------------------------------------
M
E
D
S
G
L
Y
-
F
-
C
A
R
TGKYYD
F
W
S
G
Y
P
P
G
--
E
E
Y
F
Q
D
-
W
G
R
G
T
L
V
T
V
S
-----------------------
S
A
S
T
K
G
P
S
V
---
F
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
56.18
27%
-6
- C11 -
-
3MK2
2
PPB1_HUMAN
A:
[199-272]
------------------------------------------------------------------------------------------------------------------------------
I
L
G
G
G
R
K
-
Y
-
M
F
R
------
M
G
T
P
D
P
E
Y
--
P
D
D
Y
S
Q
-
G
G
----
T
R
L
D
G
-----
K
N
L
V
Q
E
W
L
---------
A
K
R
Q
G
A
R
Y
V
--
W
N
R
T
------------
E
L
M
Q
A
S
L
D
--
P
S
V
T
H
L
-
M
G
L
F
E
P
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
56.10
27%
-4
- C11 -
-
1ZEB
1
PPB1_HUMAN
A:
[199-272]
------------------------------------------------------------------------------------------------------------------------------
I
L
G
G
G
R
K
-
Y
-
M
F
R
------
M
G
T
P
D
P
E
Y
--
P
D
D
Y
S
Q
-
G
G
----
T
R
L
D
G
-----
K
N
L
V
Q
E
W
L
---------
A
K
R
Q
G
A
R
Y
V
--
W
N
R
T
------------
E
L
M
Q
A
S
L
D
--
P
S
V
T
H
L
-
M
G
L
F
E
P
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
56.06
35%
6
- C15 -
-
5GHW
-
?
H:
[93-144]
------------------------------------------------------------------------------------------------------------------------------
M
E
D
S
G
L
Y
-
F
-
C
A
R
TGKYYD
F
W
S
G
Y
P
P
G
--
E
E
Y
F
Q
D
-
W
G
R
G
T
L
V
T
V
S
-----------------------
S
A
S
T
K
G
P
S
V
---
F
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
56.02
27%
-5
- C11 -
-
3MK0
2
PPB1_HUMAN
A:
[199-272]
------------------------------------------------------------------------------------------------------------------------------
I
L
G
G
G
R
K
-
Y
-
M
F
R
------
M
G
T
P
D
P
E
Y
--
P
D
D
Y
S
Q
-
G
G
----
T
R
L
D
G
-----
K
N
L
V
Q
E
W
L
---------
A
K
R
Q
G
A
R
Y
V
--
W
N
R
T
------------
E
L
M
Q
A
S
L
D
--
P
S
V
T
H
L
-
M
G
L
F
E
P
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
55.96
27%
-4
- C11 -
-
3MK1
2
PPB1_HUMAN
A:
[199-272]
------------------------------------------------------------------------------------------------------------------------------
I
L
G
G
G
R
K
-
Y
-
M
F
R
------
M
G
T
P
D
P
E
Y
--
P
D
D
Y
S
Q
-
G
G
----
T
R
L
D
G
-----
K
N
L
V
Q
E
W
L
---------
A
K
R
Q
G
A
R
Y
V
--
W
N
R
T
------------
E
L
M
Q
A
S
L
D
--
P
S
V
T
H
L
-
M
G
L
F
E
P
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
55.72
35%
28
* C15 *
-
5SY8
1
?
H:
[90-141]
------------------------------------------------------------------------------------------------------------------------------
M
E
D
S
G
L
Y
-
F
-
C
A
R
TGKYYD
F
W
S
G
Y
P
P
G
--
E
E
Y
F
Q
D
-
W
G
R
G
T
L
V
T
V
S
-----------------------
S
A
S
T
K
G
P
S
V
---
F
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
55.51
35%
19
- C15 -
-
5T85
1
?
H:
[90-141]
------------------------------------------------------------------------------------------------------------------------------
M
E
D
S
G
L
Y
-
F
-
C
A
R
TGKYYD
F
W
S
G
Y
P
P
G
--
E
E
Y
F
Q
D
-
W
G
R
G
T
L
V
T
V
S
-----------------------
S
A
S
T
K
G
P
S
V
---
F
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
55.32
35%
27
- C15 -
-
5TFW
-
?
H:
[90-141]
------------------------------------------------------------------------------------------------------------------------------
M
E
D
S
G
L
Y
-
F
-
C
A
R
TGKYYD
F
W
S
G
Y
P
P
G
--
E
E
Y
F
Q
D
-
W
G
R
G
T
L
V
T
V
S
-----------------------
S
A
S
T
K
G
P
S
V
---
F
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
55.25
35%
38
- C15 -
-
5T29
-
?
H:
[90-141]
------------------------------------------------------------------------------------------------------------------------------
M
E
D
S
G
L
Y
-
F
-
C
A
R
TGKYYD
F
W
S
G
Y
P
P
G
--
E
E
Y
F
Q
D
-
W
G
R
G
T
L
V
T
V
S
-----------------------
S
A
S
T
K
G
P
S
V
---
F
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
54.90
35%
30
- C15 -
-
5T5B
1
?
H:
[90-165]
------------------------------------------------------------------------------------------------------------------------------
M
E
D
S
G
L
Y
-
F
-
C
A
R
TGKYYD
F
W
S
G
Y
P
P
G
--
E
E
Y
F
Q
D
-
W
G
R
G
T
L
V
T
V
S
-----------------------
S
A
S
T
K
G
P
S
V
---
F
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
54.73
35%
41
- C15 -
-
5IQ7
-
?
H:
[90-141]
------------------------------------------------------------------------------------------------------------------------------
M
E
D
S
G
L
Y
-
F
-
C
A
R
TGKYYD
F
W
S
G
Y
P
P
G
--
E
E
Y
F
Q
D
-
W
G
R
G
T
L
V
T
V
S
-----------------------
S
A
S
T
K
G
P
S
V
---
F
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
56
SP3
54.46
20%
50
* C9 *
-
1KBI
6
CYB2_YEAST
A:
[1-511]
---------------------------------------------------------------------------------------------EPKLDMNKQKI
S
P
--
A
E
V
A
K
H
N
K
P
-----
D
D
C
W
V
V
I
N
G
Y
V
-
Y
D
L
T
R
------
F
L
P
N
H
P
G
G
--
Q
D
V
I
K
F
N
A
G
K
D
--
V
T
A
I
F
EPLHA
P
N
V
I
D
K
Y
I
APEKK
L
G
P
L
Q
G
S
M
P
P
E
L
V
--
C
P
P
Y
------------
A
P
G
-
E
T
K
E
--
D
I
A
R
K
E
-
Q
L
K
S
L
L
P
P
L
D
N
I
I
N
L
Y
D
F
E
Y
L
A
S
Q
T
LT
K
Q
A
W
A
Y
Y
S
SGANDE
V
T
H
R
E
N
H
N
A
Y
H
R
I
FFKPKILVDVRKVDI
S
T
D
M
LGSHVDVP
F
Y
V
S
A
TALCKLGNPLE
G
E
K
D
V
A
R
G
C
G
QGV
T
K
V
P
Q
M
I
S
TLASCS
P
E
E
I
I
E
A
APSDK
Q
I
Q
W
Y
Q
L
Y
V
N
SD
R
K
I
T
D
D
L
V
K
N
V
E
K
L
GVK
A
L
F
V
T
VDAPSLGQR
E
K
D
M
K
L
K
F
S
N
TKK
T
N
V
E
ESQGASRALSKFIDPSLT
W
K
D
I
E
E
L
K
K
K
T
K
L
P
I
V
I
K
GVQR
T
E
D
V
I
K
A
A
E
I
GVS
G
V
V
LSNHGGRQLDFSRA
P
I
E
V
L
A
E
T
M
P
I
L
E
Q
RNLKDK
L
E
V
F
V
D
G
GVRR
G
T
D
V
L
K
A
L
C
L
GAK
G
V
G
L
G
R
P
F
L
Y
A
N
S
C
YG
R
N
G
V
E
K
A
I
E
I
L
R
D
E
I
E
M
S
M
R
L
L
GVTSIAELKPDLLDLSTLKARTVGVPND
V
L
Y
N
E
V
YEGPTLTEFEDA
17
PsiBlast_PDB
53.74
35%
27
- C15 -
-
5JNY
-
?
A:
[90-141]
------------------------------------------------------------------------------------------------------------------------------
M
E
D
S
G
L
Y
-
F
-
C
A
R
T
G
K
Y
Y
D
F
W
S
G
Y
P
P
G
--
E
E
Y
F
Q
D
-
W
G
R
G
T
L
V
T
V
S
-----------------------
S
A
S
T
K
G
P
S
V
---
F
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------