@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : MGG_11967T0: (2018-03-19 )
EGDYYFTPPPATEKCAYTIYRVASKNGLKALVREGDYMAYKNWDQEIHGVQVHFDGECNPKYKSDVYVFKKGVREEKHIWLSPPPNKSSGVH
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------........---.10----...-.....----20....-..--..30--....--.------.--.------.-40-........50.......----.60..----.--.---.-...70------.-.---...------...80-....-.-----...--90..----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EG
D
Y
Y
FTP---PPA----TE
K
-
C
A
Y
T
I
----
Y
R
VASK-N
G
--
L
K
A
L
--
V
REG--
D
------
Y
--
M
------A-YK-NWDQEI
H
G
V
Q
V
H
FDGEC----NPKYK----S--
D
---
V
-
Y
V
F
K
K------G-V---REE------
K
H
I
W
L-SPPP-N-----KSS--G-VH----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
Fugue
60.35
17%
41
- C21 -
-
2H7A
-
YCGL_ECOL6
A:
[1-110]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
M
P
K
P
G
---
I
L
K
----
S
K
S
-
M
F
C
V
I
----
Y
R
S
S
K
R
-
D
Q
--
T
Y
L
Y
--
V
E
K
K
--
D
------
D
--
F
SRVPEE
L
-
M
K
-
G
F
G
Q
P
Q
L
A
M
I
L
P
L
D
G
R
-----
K
K
L
V
N
----
A
--
D
---
I
-
E
K
V
K
Q
------
A
-
L
---
T
E
Q
------
G
Y
Y
L
Q
-
L
P
P
P
-
P
-----
E
D
L
--
L
-
K
Q
HLSVMGQKTDDTNK--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
49
SP3
58.49
18%
14
- C21 -
-
2BB2
-
?
?:
[91-181]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
E
-
H
K
I
T
L
----
Y
E
N
P
N
F
-
T
G
--
K
K
M
E
--
V
I
D
D
--
D
------
V
PS
F
------
H
-
A
H
-
G
Y
Q
E
K
V
S
S
V
R
V
-
Q
S
G
T
W
V
G
Y
Q
Y
P
G
Y
R
----
G
--
L
---
Q
-
Y
L
L
E
K
------
G
D
Y
---
K
D
S
------
G
D
-
F
G
-
A
P
Q
P
-
Q
-----
V
Q
S
VR
R
-
I
R
DMQW------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
54.76
21%
-2
- C21 -
-
4JDN
1
?
A:
[6-149]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------K
A
F
N
N
F
P
I
T
N
KIQCN
G
L
F
T
PSNIETLLGGT
E
I
G
K
F
T
V
T
---
P
K
S
----
S
G
S
M
F
L
V
S
A
----
D
I
I
A
S
R
M
E
G
G
V
V
L
A
L
--
V
R
E
G
--
D
SKPC
A
I
S
--
Y
------
G
-
Y
S
-
S
G
V
P
N
L
C
S
L
R
T
S
I
T
-------
N
T
G
L
T
----
P
--
T
---
T
-
Y
S
L
R
V
------
G
-
G
---
L
E
S
------
G
V
V
W
V
-
N
A
L
S
-
N
-----
G
N
D
--
I
-
L
G
I
T
N
T
S
N
V
S
F
L
E
V
I
P
Q-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
52.63
19%
-15
- C21 -
-
5AZW
1
TMED2_HUMAN
A:
[2-95]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
Y
F
V
S
I
---
D
A
H
----
A
E
E
-
C
F
F
E
R
----
V
T
S
G
T
K
-
M
G
--
L
I
F
E
--
V
A
E
G
--
G
------
F
--
L
-----------
D
I
D
V
E
I
T
G
P
D
N
K
G
I
Y
K
G
----
D
R
E
-
S
----
S
--
G
---
K
-
Y
T
F
A
A
------
H
-
M
---
D
G
T
------
Y
K
F
C
F
-
S
N
R
M
-
S
-----
T
M
T
--
P
-
K
I
V
M
F
T
I
D
I
G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
SP3
48.58
13%
-81
- C21 -
-
1GVI
-
?
A:
[506-588]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
D
V
A
F
L
-----
T
A
----
D
D
E
-
V
N
H
L
V
----
Y
A
K
T
D
G
-
N
-----------
E
T
--
V
------
M
--
I
------
I
-
I
N
-
R
S
N
E
A
---
A
E
I
P
M
P
I
D
A
----
R
G
K
W
L
----
V
--
N
---
L
-
L
T
G
E
R
------
F
-
A
---
A
E
A
------
E
T
L
C
V
-
S
L
P
P
-
Y
G
F
V
L
Y
A
V
E
--
S
-
W
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
47.38
40%
-164
- C22 -
-
1WDU
-
?
A:
[122-166]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
Y
F
E
P
---
D
K
P
----
I
E
S
-
Y
L
E
Q
I
----
K
R
V
E
R
K
-
M
G
--
P
K
R
L
--
I
F
G
G
--
D
------
A
--
N
------
A
-
K
S
-
T
W
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
42
SP3
47.10
13%
61
- C21 -
-
1Y8R
1
SUMO1_HUMAN
C:
[14-97]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
D
---------------
K
K
E
-
G
E
Y
I
K
----
L
K
V
I
G
Q
-
D
S
--
S
E
I
H
F
K
V
K
M
T
--
T
HL
K
K
L
K
E
--
S
------
Y
-
C
Q
-
R
Q
G
V
P
M
N
S
L
R
F
L
F
E
G
Q
R
I---
A
D
N
H
T
----
P
--
K
---
E
-
L
----------
G
-
M
---
E
E
E
------
D
V
I
E
V
-
Y
--
Q
-
E
-----
Q
T
G
--
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
46.99
17%
37
- C22 -
-
5C68
-
?
A:
[4-121]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
S
R
V
Q
L
A
L
RVPD
L
E
A
S
I
G
F
Y
S
K
L
F
G
T
---
G
P
A
----
K
V
R
-
P
G
Y
A
N
----
F
A
I
-
A
E
-
P
P
--
L
K
L
V
--
L
I
E
G
--
A
----------------
G
-
E
D
-
A
T
R
L
D
H
L
G
V
E
V
E
D
S
A
Q
V
----
G
H
A
A
R
----
R
--
L
---
K
-
E
S
G
L
A
------
T
-
V
---
E
E
N
------
D
K
V
W
V
-
T
G
P
G
-
G
-----
E
P
W
--
E
-
V
Y
VV--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
48
SP3
44.33
14%
85
- C23 -
-
1AYA
1
PTN11_MOUSE
A:
[1-101]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
R
-
R
W
F
H
-----
P
N
I
----
T
-------------
G
V
E
A
E
-
N
L
--
L
L
T
R
--
G
V
D
G
--
S
------
F
--
L
------
A
-
R
P
S
K
S
N
P
G
D
F
T
L
S
V
R
R
N
G
A
V
T
H
I
-
K
I
Q
N
T
----
G
--
D
---
Y
-
Y
D
L
Y
G
------
G
-
E
---
K
F
A
T
L
A
E
L
V
Q
Y
Y
M
E
-
H
H
G
Q
L
K
-----
E
K
N
--
G
-
D
V
I
E
LKYPLN--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
Fugue
43.63
19%
52
- C22 -
-
5UFL
-
CIP2A_HUMAN
A:
[5-561]
----------------------------------------------------------------------------------------------------------------------T
A
C
L
K
S
L
L
L
T
V
S
Q
YKA
N
A
T
Q
L
L
R
H
L
E
V
I
SRLFTSNQI
L
T
S
E
C
L
S
C
L
V
E
L
L
EDPS
A
S
L
I
L
S
I
I
G
L
L
S
Q
L
A
VD
I
E
T
R
D
C
L
Q
N
TL
N
S
V
L
A
G
V
V
C
RTDSV
F
L
Q
C
I
Q
L
L
Q
K
L
T
YNVKIFYSGAN
I
D
E
L
I
T
F
L
I
D
H
I
Q
SE
L
K
M
P
C
L
G
L
L
A
N
L
C
RHN
L
S
V
Q
T
H
I
K
T
LSNS
F
Y
R
T
L
I
T
L
L
A
HSS
L
T
V
V
V
F
A
L
S
I
L
S
S
L
TLNEEVGEKLFHARN
I
H
Q
T
F
Q
L
I
F
N
I
L
I
N
G
D
--------
G
T
L
----
T
R
K
-
Y
S
V
D
L
----
L
M
D
L
L
K
-
N
---------
P
K
I
A
--
D
------
Y
--
L
------
T
R
Y
E
-
H
F
S
S
C
L
H
Q
V
L
G
L
L
N
G
K
-----
D
P
D
S
S
----
S
--
K
---
V
-
L
E
L
L
L
------
A
-
F
C
S
V
T
Q
L
------
R
H
M
L
T
-
Q
M
M
F
-
E
-----
S
H
T
--
K
-
C
L
E
P
T
V
A
L
L
R
W
L
S
QPLDGN
C
S
V
L
A
L
E
L
F
K
E
I
F
E
D
V
I
D
A
ANCSSA
D
R
F
V
T
L
L
L
P
T
I
L
D
Q
LQFTEQNLD
E
A
L
T
R
K
K
C
E
R
I
A
K
A
I
E
V
L
L
T
L
C
GD
D
T
L
K
M
H
I
A
K
I
LT
T
V
K
C
T
T
L
I
E
Q
Q
F
T
Y
G
KIDLGFGTKVADS
E
L
C
K
L
A
A
D
V
I
L
K
T
L
D
L
I
N
K
L
KPLVPG
M
E
V
S
F
Y
K
I
L
Q
DPRL
I
T
P
L
A
F
A
L
T
SDN
R
E
Q
V
Q
S
G
L
R
I
L
L
E
A
APLPDFP
A
L
V
L
G
E
S
I
A
A
N
N
A
Y
R
Q
Q
E
35
Fugue
43.45
24%
-23
- C22 -
-
4Q86
1
YCAO_ECOLI
A:
[2-583]
T
Q
T
F
I
P
GKDAA
L
E
D
S
I
A
R
F
Q
Q
K
L
S
D
L
G
F
Q
I
E
EASWLNPVPN
V
W
S
V
H
I
R
D
KECAL
C
F
T
N
G
K
G
AT
K
K
A
A
L
A
S
A
L
G
E
Y
F
E
R
L
S
T
NYFFADFWLG
E
T
I
A
N
GPFVHYPN
E
K
W
F
P
L
TENDDVPEGLLD
D
R
L
R
A
F
Y
D
P
ENELTGSMLIDLQSGNEDR
G
I
C
G
L
P
F
T
RQSDN
Q
T
V
Y
I
P
M
N
I
I
G
N
LYVSNG
M
S
A
GNT
R
N
E
A
R
V
Q
G
L
S
E
V
F
E
R
Y
V
K
N
R
I
I
A
E
S
I
S
L
P
E
IP
A
D
V
L
A
R
Y
P
A
V
V
E
A
I
E
T
L
E
A
E
G
F
P
I
F
A
Y
D
GSLGGQYP
V
I
C
V
V
L
F
NPANG
T
C
F
A
S
F
G
A
H
PD
F
G
V
A
L
E
R
T
V
T
E
L
L
QGRGLKDLDVFTPPTFD
D
E
E
V
A
E
H
T
N
L
E
T
H
F
I
DSS
G
L
I
S
WDLFKQ
D
A
D
Y
P
F
V
D
WNF
S
G
T
----
T
E
E
-
E
F
A
T
L
----
M
A
I
F
N
K
-
E
D
--
K
E
V
Y
--
I
A
D
Y
--
E
------
H
--
L
---------------
G
V
Y
A
C
R
I
I
V
P
G
----------
M
----
S
--
D
---
I
-
Y
-----------------
P
A
------
E
D
L
W
L
----
A
-
N
-----
N
S
M
--
G
-
S
H
L
R
E
T
I
L
S
LPGSEWE
K
E
D
Y
L
N
L
I
E
Q
L
D
E
E
GFDDFTR
V
R
E
L
L
GLATGSDNGWYTLR
I
G
E
L
K
A
M
L
A
L
A
G
GD
L
E
Q
A
L
V
W
T
E
W
T
M
E
F
NSSVFS
P
E
R
A
N
Y
Y
R
C
L
Q
T
L
L
L
L
A
Q
EEDRQPLQY
L
N
A
F
V
R
M
YG
A
D
A
V
E
A
A
S
A
A
M
S
GEAAFYGLQPVDSDLHAF
A
A
H
Q
S
L
L
K
A
Y
E
K
L
Q
R
A
K
A
A
F----------------------------------------------
41
SP3
42.71
16%
44
- C21 -
-
1E32
-
TERA_MOUSE
A:
[21-106]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
R
P
N
R
L
I
V
---
D
E
A
----
I
N
E
-
D
N
S
V
V
----
S
L
S
Q
P
K
M
D
E
--
L
Q
----
L
F
R
G
--
D
------
T
--
V
------
L
-
L
K
-
G
K
K
R
R
E
A
V
C
I
V
L
S
D
D
T
C
----
S
D
E
K
I
----
R
--
M
---
N
-
R
V
V
R
N
N
L
----
R
-
V
---
R
L
G
------
D
V
I
S
I
-
Q
P
C
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
50
SP3
41.62
11%
17
* C21 *
-
1WM2
-
SUMO2_HUMAN
A:
[12-89]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
E
N
-
N
D
H
I
N
----
L
K
V
A
G
Q
-
D
G
--
S
V
V
Q
F
K
I
K
R
H
--
T
PL
S
K
L
M
K
--
A
------
Y
-
C
E
-
R
Q
G
L
S
M
R
Q
I
R
F
R
F
D
G
Q
P
I
---
N
E
T
D
T
----
P
--
A
---
Q
-
L
----------
E
-
M
---
E
D
E
------
D
T
I
D
V
-
F
Q
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
46
SP3
39.12
16%
54
* C23 *
-
1WG4
-
A:
[1-98]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G
S
S
G
S
S
G
G
--
P
---
P
T
R
----
R
S
D
-
F
R
V
L
V
S
GLP
P
S
G
S
W
Q
-
D
L
--
K
D
H
M
--
R
E
A
G
----------------------------
D
V
C
Y
A
D
V
Q
K
D
G
M
G
----
M
V
E
Y
L
----
R
K
E
D
---
M
E
Y
A
L
R
K
LD
D
T
K
F
R
-
S
---
H
E
G
------
E
T
S
Y
I
-
R
V
Y
P
-
E
-----
R
S
S
--
G
-
P
S
SG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
38.17
55%
-426
- C7 -
-
2KM0
-
COPK_CUPMC
A:
[15-25]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
----
S
--
K
---
V
-
H
V
F
K
D
------
G
-
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
47
SP3
37.63
14%
76
- C21 -
-
1EJF
-
TEBP_HUMAN
A:
[1-110]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
Q
P
---
A
S
A
K
W
Y
D
R
R
D
-
Y
V
F
I
E
----
F
C
V
E
D
S
-
K
D
--
V
N
V
N
--
F
E
K
S
K
L
T
------
F
--
S
------
C
-
L
G
-
G
S
D
N
F
K
H
L
N
E
I
D
L
F
H
C
I
----
D
P
N
D
S
K
H
K
R
T
--
D
R
S
I
L
-
C
C
L
R
K
------
G
------
E
S
------
G
Q
S
W
---
P
R
L
-
T
-----
K
E
R
--
A
K
L
N
WLSVDFNNWKDWE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
36.71
44%
59
- C24 -
-
4CLA
1
CAT3_ECOLX
A:
[121-145]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
Y
K
----
S
--
D
---
T
-
K
L
F
P
Q
------
G
-
V
---
T
P
E
------
N
H
L
N
I
-
S
A
L
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
45
SP3
36.38
9%
65
- C21 -
-
1CCZ
2
LFA3_HUMAN
A:
[1-93]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------F
S
Q
Q
I
Y
G
V
V
Y
G
N
V
T
F
H
---
V
P
S
----
N
V
P
-
L
K
E
V
L
----
W
K
K
Q
K
D
-
K
V
--
A
E
L
E
--
N
S
E
F
--
R
------
A
F
-
S
------
S
-
F
K
-
N
--------
R
V
Y
L
D
T
V
---------
S
----
G
--
S
---
L
-
T
I
Y
N
L
------
T
-
S
---
S
D
E
------
D
E
Y
E
M
E
S
P
N
I
-
T
-----
D
T
M
--
K
-
F
F
L
Y
V
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
36.36
55%
-240
- C6 -
-
3DSO
-
COPK_CUPMC
A:
[15-25]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
----
S
--
K
---
V
-
H
V
F
K
D
------
G
-
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
36.17
44%
61
- C24 -
-
1CIA
-
CAT3_ECOLX
A:
[121-145]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
Y
K
----
S
--
D
---
T
-
K
L
F
P
Q
------
G
-
V
---
T
P
E
------
N
H
L
N
I
-
S
A
L
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------