@TOME V2.3
(Mar 2018)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : MGG_12426T0: (2018-03-19 )
PSEMRFANAWLAFVPVATQALGVAAELCTIDILFRGRRVTFRNIPSGSFQQTEVQGKRCIISVDDSCQPTQVGLDQNYWSVKLREEALGL
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------.........10------.--------..---.....20..---.----.....-30---..-------.-....-----..40.-.......---50...-.----.-----...60...-.....70....-.--...80----....-.....90-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------PSEMRFA
N
A
W
L
------
A
--------
F
V
---
P
V
A
T
Q
A
L
G
V
---
A
----
A
E
L
C
T
-
I
----
D
I
-------
L
-FRG
R
-----
R
V
T
F
R
-NIPSGSF---QQTEV-Q----G-----
K
R
C
I
I
SVD-DSCQPTQVGLD-Q--N
Y
W
S
-----
V
K
L
R
-
E
E
ALGL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
56.08
24%
-47
- C7 -
-
4RGH
-
DDI2_HUMAN
A:
[41-168]
-------------------------------------------------------------------------------------------------
Q
V
V
M
L
Y
I
N
C
K
V
NG
H
P
V
K
A
--------
F
V
D
SG
A
Q
M
T
I
M
S
Q
A
---
C
----
A
E
R
C
N
-
I
----
M
R
-------
L
-
V
D
R
R
WAGIA
K
G
V
G
T
-
Q
K
I
I
G
R
V
---
H
L
A
Q
V
-
Q
I
EG
D
F
-----
L
P
C
S
F
S
I
L
-
E
E
-
Q
P
M
D
M
L
L
G
-
L
--
D
M
L
K
R
H
QCS
I
D
L
K
-
K
N
V
L
V
I
GTTG
S
Q
T
T
F
L
PEGELP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
39
SP3
55.85
15%
-28
- C2 -
-
1QBA
-
?
?:
[1-858]
---------------------------------------------------------------------D
Q
Q
L
V
D
Q
L
S
Q
L
K
L
N
V
K
M
LDNRAGENGVD
C
A
A
L
G
A
D
W
A
S
C
------
N
--------
R
V
---
L
F
T
L
S
N
D
G
Q
---
A
----
I
D
G
K
D
-
W
----
V
I
-------
Y
-
F
H
S
P
-----
R
Q
T
L
R
--
V
D
N
D
Q
F
---
K
I
A
H
L
-
T
----
G
-----
D
L
Y
K
L
E
P
T
-
A
K
F
S
G
F
P
A
G
------
K
A
V
E
-----
I
P
V
V
-
A
E
Y
W
Q
L
FRNDFL
P
R
W
Y
A
T
S
GDAKPKMLANTDTENLDQFVAPFTGDQWKRTKDDK
N
I
L
M
T
P
A
S
R
F
V
S
N
AD
L
Q
T
L
PAGALRGKIVPTPM
Q
V
K
V
H
A
Q
D
A
D
LRKGVALDLSTLV
K
P
A
A
D
V
V
S
Q
R
F
A
L
L
G
V
P
V
Q
TNGY
P
I
K
T
D
I
Q
PGKFKGAMAVSG
A
Y
E
L
K
I
G
KK
E
A
Q
V
I
G
FD
Q
A
G
V
F
Y
G
L
Q
S
I
L
S
L
VPSDGSG
K
I
A
T
L
D
A
S
D
A
P
RFP
Y
R
G
I
F
L
D
VAR
N
F
H
K
K
D
A
V
L
R
L
L
D
Q
M
A
A
Y
KLN
K
F
H
F
HLSDDEGWR
I
E
I
P
GLPELTEVGG
Q
R
C
HDLSETTCLLPQYGQGP
D
V
Y
G
G
F
F
S
R
Q
D
Y
I
D
I
I
K
Y
A
Q
A
R
Q
I
E
V
I
P
E
IDMPAHA
R
A
A
V
V
S
M
E
A
R
Y
K
K
L
H
A
A
GK
E
Q
E
A
N
E
FRLVDPTDT
S
N
T
T
S
VQFFNRQSYLNPCL
D
S
S
Q
R
F
V
D
K
V
I
G
E
I
A
Q
M
H
K
E
A
GQPIKTWHFGGDEAKNIRLGAGYTDKAKPEPGKGIIDQGNEDKPWAKS
Q
V
C
Q
T
M
I
K
E
GKVADMEH
L
P
S
Y
F
G
Q
E
V
S
K
L
V
K
A
H
GID
R
M
Q
A
WQDGLKDAESSKAFATS
R
V
G
V
NFWDTLYWG
G
F
D
S
V
N
D
W
A
N
K
GYEVVVSNPDYVYMDFPYEVNPD
E
R
G
Y
Y
WGTRFSD
E
R
K
V
F
S
FAPDNMPQNAETSVDRDG
N
H
F
N
A
K
S
DKPWPGAY
G
L
S
A
Q
L
W
S
ETQRT
D
P
Q
M
E
Y
M
I
F
P
R
A
L
S
V
A
E
R
S
W
H
RAGWEQDYRAG
R
E
Y
K
G
GETHFVD
T
Q
A
L
E
K
D
W
L
R
F
A
N
I
L
G
Q
R
E
L
A
K
L
D
K
G
GVA
Y
R
L
P
V
P
G
A
R
V
A
GG
K
L
E
A
N
I
ALPG
L
G
I
E
Y
S
TDGGK
Q
W
Q
R
Y
D
AKA
K
P
A
V
S
G
E
V
Q
V
R
S
V
S
PDGKRY
S
R
A
E
K
V
26
Fugue
53.20
17%
-44
* C7 *
-
4TZC
1
CRBN_MOUSE
A:
[2-107]
--------------------------------------------------------------------------------------------------
T
S
L
C
C
K
Q
C
Q
E
------
T
--------
E
I
---
T
T
K
N
E
I
F
S
L
---
S
----
L
E
T
L
T
-
V
YKAS
N
L
-------
N
-
L
I
G
R
-----
P
S
T
V
H
-
S
W
F
P
G
-
Y
---
A
W
T
I
A
-
Q
----
C
-----
K
I
C
A
S
H
I
G
-
W
K
F
T
A
T
K
K
D
M
S
P
Q
--
K
F
W
G
-----
L
T
---
R
S
A
L
L
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
47.37
19%
-11
- C5 -
-
5FFL
3
CLM1_MOUSE
A:
[1-113]
------------------------------------------------------------------------------MEDPVTGPE
E
V
S
G
Q
EQ
G
S
L
T
V
Q
C
R
Y
T
S
G
W
K
------
D
--------
Y
K
---
K
Y
W
C
Q
--
G
V
---
P
----
Q
R
S
C
K
-
T
----
L
V
ETDASE
Q
L
-
V
K
K
N
-----
R
V
S
I
R
-
D
N
Q
R
D
F
I
---
F
T
V
T
M
-
E
----
D
-----
L
R
M
S
D
A
G
I
-
Y
W
C
G
I
T
K
G
G
L
D
-
P
---
M
F
K
-----
V
T
V
N
-
I
G
P
V
P
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
46.95
29%
-319
- C8 -
-
3R7T
-
PURA_CAMJE
A:
[50-74]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
G
V
-----
R
Y
A
L
H
-
L
M
P
S
G
V
L
---
H
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
SP3
46.61
20%
-43
- C9 -
-
1LVL
2
?
?:
[1-458]
--------------------------QQTIQTT
L
L
I
I
G
GG
P
G
G
Y
V
A
A
I
R
A
G
Q
L
GIP
T
V
L
V
E
GQALGGTCLNIGC
I
P
S
K
A
L
I
H
V
A
E
Q
F
H
Q
A
S
R
F
T
E
PS
P
L
G
I
S
V
A
S
P
R
L
------
D
--------
I
G
---
Q
S
V
A
W
K
D
G
I
---
V
----
D
R
L
T
T
G
V
----
A
A
-------
L
-
L
K
K
H
-----
G
V
K
V
V
-
H
-
G
W
A
K
V
LDG
K
Q
V
E
V
-
D
----
G
Q
R
I
Q
C
E
H
L
L
L
A
T
G
S
S
S
V
E
L
P
M
L
P
L
G
-
G
--
P
V
I
S
--------
S
-
T
E
A
L
A
P
KALPQ
H
L
V
V
VGGG
Y
I
G
L
E
L
G
I
A
Y
R
K
L
G
A
Q
V
S
V
V
E
ARERILPTYDSELT
A
P
V
A
E
S
L
K
K
L
GIALHLG
H
S
V
E
GYENG
C
L
L
A
N
D
GK
G
G
Q
L
R
L
EADRVLVAV
G
R
R
P
RTKGFNLECLDLKMNGA
A
I
A
I
D
ERCQTSMHN
V
W
A
I
G
DVAGEPML
A
H
R
A
M
A
Q
G
E
M
V
A
E
I
I
A
G
K
A
R
R
F
E
P
A
A
I
A
A
V
C
FTDP
E
V
V
V
V
G
KT
P
E
Q
A
S
Q
Q
G
L
D
C
I
V
A
Q
F
P
FAAN
G
R
A
M
S
L
ESK
S
G
F
V
R
V
V
A
R
RDNHLIL
G
W
Q
A
V
G
V
AVSEL
S
T
A
F
A
Q
S
L
E
M
GAC
L
E
D
V
A
G
T
I
H
A
H
PTLG
E
A
V
Q
E
A
A
L
R
A
L
GHALHI---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
46.00
24%
-45
- C5 -
-
2KSW
-
?
A:
[1-66]
----------------------------------------------------------------------------------------------------------------------------
V
---
P
V
G
S
D
C
------
E
----
P
K
L
C
T
-
M
----
D
L
-------
V
----------
P
H
C
F
L
-
N
P
E
K
G
-------
I
V
V
-
V
----
H
-----
G
G
C
A
L
S
K
Y
-
K
C
Q
N
P
N
H
E
K
L
G
-
Y
--
T
H
E
C
-----
E
E
A
I
-
K
N
A
P
R
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
45.68
36%
-264
- C8 -
-
4M9D
-
PURA_BACAN
B:
[49-73]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
G
V
-----
K
Y
K
L
H
-
L
I
P
S
G
I
F
---
Y
K
---------
E
-----
K
I
C
V
I
G
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
45.49
36%
-243
- C8 -
-
4M9D
-
PURA_BACAN
A:
[49-73]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
G
V
-----
K
Y
K
L
H
-
L
I
P
S
G
I
F
---
Y
K
---------
E
-----
K
I
C
V
I
G
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
45.28
27%
-309
- C8 -
-
5I34
-
?
A:
[69-83]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
-----
S
Y
A
F
N
-
L
L
P
S
G
L
I
---
N
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
44.82
20%
20
* C5 *
-
3FMG
-
VP7_ROTRH
A:
[28-262]
T
S
T
L
C
L
Y
Y
P
T
E
A
A
T
E
I
NDNS
W
K
D
T
L
S
Q
L
F
L
T
K
GWPTGS
V
Y
F
K
E
Y
TD
I
A
S
F
S
V
DPQLYCD
Y
N
V
V
L
M
K
YDATLQLD
M
S
E
L
A
D
L
IL
N
E
W
L
C
N
P
M
DITL
Y
Y
Y
Q
Q
T
D
E
A
N
K
W
I
------
S
M
GS
S
C
T
I
K
V
C
---
P
L
N
T
Q
T
L
G
I
GCL
T
----
T
D
T
A
T
-
F
----
E
E
-------
V
-
A
T
A
E
-----
K
L
V
I
T
-
D
V
V
D
G
V
N
---
H
K
L
D
V
-
T
----
T
-----
A
T
C
T
I
R
----
N
C
K
K
L
--
G
P
R
-
E
--
N
V
A
V
-----
I
Q
V
G
G
S
D
V
L
D
I
TADPT
T
A
P
Q
T
ER
M
M
R
I
N
W
K
K
W
W
Q
V
F
Y
T
V
V
D
Y
V
N
Q
I
I
Q
A
M
S
K-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
SP3
44.22
20%
31
- C9 -
-
1NHP
1
?
?:
[1-321]
-------------------------------------------------M
K
V
I
V
L
G
SS
H
G
G
Y
E
A
V
E
E
L
L
N
L
HPDAE
I
Q
W
Y
E
KGDFISFLSAG
M
Q
L
Y
L
E
G
K
V
K
D
V
N
S
V
R
------
Y
--------
M
T
---
G
E
K
M
E
S
R
G
V
---
N
V
F
S
N
T
E
I
T
A
-
I
----
Q
----------
P
K
E
H
-----
Q
V
T
V
K
-
D
L
V
S
G
E
-----
E
R
V
E
-
N
----
Y
-----
D
K
L
I
I
S
P
G
A
V
P
F
E
L
D
I
P
G
K
D
-
L
D-
N
I
Y
L
-----
M
R
G
R
-
Q
W
A
I
K
L
K
Q
K
T
V
DPEVN
N
V
V
V
I
G
SG
Y
I
G
I
E
A
A
E
A
F
A
K
A
G
K
K
V
T
V
I
D
ILDRPLGVYLD
K
E
F
T
D
V
L
T
E
E
M
E
A
N
N
I
T
I
A
T
G
E
T
V
E
R
YEGDGRVQ
K
V
V
T
DK
N
A
Y
D
A
D
L
V
V
V
AV
G
V
R
P
NTAWLKGTLELHPNG
L
I
K
T
D
EYMRTSEPD
V
F
A
V
G
DATLIKYNPAD
T
E
V
N
I
AL
A
T
N
A
R
K
Q
G
R
F
A
V
K
N
L
EEPVKPFP-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
44.08
28%
-309
- C4 -
-
1NLQ
-
NLP_DROME
A:
[63-92]
--------------------------------------------------------------------------------------------------------------------------------
P
I
A
V
L
K
A
G
E
--------
T
R
A
V
N
-
P
----
D
V
-------
E
-
F
Y
E
S
-----
K
V
T
F
K
L
I
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
43.60
29%
-243
- C8 -
-
1J4B
-
PURA1_MOUSE
A:
[76-92]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
G
K
-----
E
Y
D
F
H
-
L
L
P
S
G
I
I
---
N
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
42.85
29%
-257
- C8 -
-
1HOP
-
PURA_ECOLI
A:
[46-62]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
G
E
-----
K
T
V
L
H
-
L
I
P
S
G
I
L
---
R
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
42.63
19%
-30
- C5 -
-
2MM2
-
?
A:
[1-65]
---------------------------------------------------------------------------------------------------------------------------------------------------
N
C
T
-
A
----
N
I
-------
L
N
I
N
E
V
-----
V
I
A
T
G
-
C
V
P
A
G
G
N
---
L
I
I
R
V
G
S
----
D
-----
H
S
Y
L
I
R
A
T
-
V
S
C
G
L
S
L
N
P
S
Q
-
S
F
I
N
G
E
S
-----
L
A
S
G
-
G
R
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
42.16
25%
-258
- C8 -
-
1DJ2
-
PURA_ARATH
B:
[66-81]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
K
-----
K
F
A
L
H
-
L
V
P
S
G
I
L
---
N
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
42.05
12%
-293
- C8 -
-
1P9B
1
PURA_PLAFA
A:
[59-75]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
D
K
-----
K
Y
A
L
H
-
L
L
P
C
G
V
L
---
Y
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
41.34
28%
-293
* C4 *
-
1NLQ
-
NLP_DROME
B:
[63-92]
--------------------------------------------------------------------------------------------------------------------------------
P
I
A
V
L
K
A
G
E
--------
T
R
A
V
N
-
P
----
D
V
-------
E
-
F
Y
E
S
-----
K
V
T
F
K
L
I
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
40.61
20%
-130
- C3 -
-
1VBW
1
?
A:
[13-58]
--------------------------------------------------------------------------------------------------------------------------------------
V
G
S
---
T
----
G
A
A
A
K
-
A
----
V
I
-------
E
-
R
E
N
P
-----
R
V
R
A
V
-
I
I
K
V
G
S
G
---
A
T
K
D
F
-
R
----
C
-----
D
R
V
R
V
W
V
T
-
E
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------