@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : MGG_13133T0: (2018-03-19 )
PPKKPPPEVPMKLIEVRPITDFRLNAFNKRVPGCEFGIFYKLLFDGDTLIGTQVERVGRSKYSWKFVPYEFAGCKWDKECNPIDKNRCQFHADSKDDDGTIIKYYKVVA
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------....-----..-.--..10-......-----..-20----...-.-----....30--.....-...40.......--.50.....----...60.----------------.--......70....-....80--.---------......-.90....-----..-----.-.100..-.....----------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPKK-----PP-P--EVP
M
-
K
L
I
E
V
R-----PI-T
D
----
F
R
L-
N
-----
A
FNKRV--PGCEF-
G
I
F
Y
K
L
L
FDGD
T
--
L
I
G
T
Q
V
E
R
----VGRSK
Y
----------------
S
--
W
K
FV
P
Y
E
FAGCK-WDKECN--P---------IDKN
R
C
-
Q
F
HADSK-----DD-----D-G
T
I
I
K
Y
-
Y
K
VVA----------------------------------------------------------------------------------
54
Fugue
60.43
16%
50
- C10 -
-
2EEB
-
A:
[1-106]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
S
G
-----
S
S
-
G
--
S
D
D
A
-
R
R
L
T
V
M
-----
S
L
-
Q
E
----
S
G
L
-
K
V
N
Q
P
A
S
F
A
I
R
L
--
N
G
A
K
G
-
K
I
D
A
K
V
H
S
P
S
G
A
--
V
E
E
C
H
V
S
E
----
L
E
P
D
K
Y
----------------
A
--
V
R
F
I
P
H
E
N
G
V
H
T
-
I
D
V
K
F
N
GS
H
---------
V
V
G
S
P
F
-
K
V
R
V
G
E
P
-----
G
Q
-----
A
-
G
---------------------------------------------------------------------------------------------
64
SP3
55.80
18%
50
- C12 -
-
1CQX
1
HMP_CUPNH
A:
[151-261]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
K
-
G
--
W
R
T
F
-
V
I
R
E
K
R
-----
P
E
-
S
D
V
I
T
S
F
I
L
E
P
-----
A
D
G
G
P
V
--
V
N
F
E
P
-
G
Q
Y
T
S
V
A
I
D
V
P
A
--
L
-
G
L
Q
Q
I
R
Q
Y
S
L
S
D
M
P
N
G
----------------
R
------
T
Y
R
I
S
V
K
R
-
E
G
G
G
P
Q
--
P
---------
P
G
Y
V
S
N
-
L
L
H
D
H
V
N
------------
V
-
G
D
Q
V
K
L
-
A
A
P
Y
G
SFHI------------------------------------------------------------------------------
57
SP3
55.44
15%
20
- C10 -
-
1V8H
-
?
A:
[2-107]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
F
R
T
I
A
R
L
N
P
-
A
--
K
P
K
A
G
E
E
F
R
L
Q
V
V
A
QH
P
N
E
P
G
----
T
R
R
-
D
-----
A
E
G
K
L
I
--
P
A
K
-
Y
-
I
N
L
V
E
V
Y
F
E
G
E
K
--
V
A
E
A
R
P
G
-----
P
S
T
S
A
N
----------------
P
----
L
Y
A
F
K
F
K
A
E
K
-----------------------
A
G
-
T
F
T
I
K
L
K
-----
D
T
-----
D
-
G
D
T
G
E
A
-
S
V
K
L
E
L---------------------------------------------------------------------------------
63
SP3
52.19
16%
27
- C10 -
-
1D7Y
1
?
A:
[116-236]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
-----
P
T
L
Q
--
G
A
T
M
-
P
V
H
T
L
R
-----
T
L
-
E
D
------
A
-
R
-----
R
I
Q
A
G
L
--
R
P
Q
S
------
R
L
L
I
V
G
G
G
--
V
I
G
L
E
L
A
A
----
T
A
R
T
A
G
----------------
V
---
H
V
S
L
V
E
T
Q
P
R
L
-
M
S
R
A
A
P
--
A
T
L
A
D
F
V
A
R
Y
H
A
A
Q
G
V
-
D
L
R
F
E
R
S
VTGSV
D
G
V
V
L
L
D
D
-
G
T
R
I
A
A
D
M
V
V
V
G
I
G
--------------------------------------------------------------------------------
52
Fugue
49.61
11%
62
- C9 -
-
1DW0
1
SHP_RHOS4
A:
[1-112]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GDTS
P
A
Q
L
I
A
G
Y
E
-----
A
A
-
A
--
G
A
P
A
-
D
A
E
R
G
R
-----
A
L
-
F
L
----
S
T
Q
-
T
-----
G
G
K
P
D
T
--
P
S
C
T
T
-
C
H
G
A
D
V
T
R
A
G
Q
T
--
R
T
G
K
E
I
A
P
----
L
A
P
S
A
T
----------------
P
--
D
R
F
T
D
S
A
R
V
E
K
W
-
L
G
R
N
C
N
--
S
---------
V
I
G
R
D
C
------
T
P
-----
G
E
-----
K
-
A
D
L
L
A
W
-
L
A
A
Q
-----------------------------------------------------------------------------------
61
SP3
49.33
14%
18
- C10 -
-
1CWV
-
A:
[302-392]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
-
T
L
T
G
I
L
------
V
-
N
G
----
Q
N
F
-
A
-----
T
-
D
K
G
F
--
P
K
T
I
F
K
N
A
T
F
Q
L
Q
M
D
N
D
V
--
A
N
N
T
Q
Y
E
W
----
S
S
S
F
T
P
----------------
N
-----
V
S
V
N
D
Q
G
-
Q
-
V
T
I
T
Y
Q
--
T
-----------
Y
S
E
V
-
A
V
T
A
K
S
K
-----
K
F
-----
P
-
S
Y
S
V
S
Y
-
R
F
Y
P
-----------------------------------------------------------------------------------
60
SP3
46.70
14%
30
* C10 *
-
1BIH
-
HEMO_HYACE
A:
[210-306]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
G
-----
E
P
V
P
--
Q
Y
V
S
-
K
D
M
M
A
K
-----
A
G
-
D
V
----
T
M
I
-
Y
-----
C
M
Y
G
S
N
--
P
M
G
Y
P
--
N
Y
F
K
---
N
G
K
D
--
V
N
G
N
P
E
D
R
----
I
T
R
H
N
R
----------------
T
----------
S
G
K
R
L
L
F
K
T
T
L
--
P
---------
E
D
E
G
V
Y
-
T
C
E
V
D
N
G
-----
V
G
-----
K
--
P
Q
K
H
S
-
L
K
L
T
V
V
---------------------------------------------------------------------------------
62
SP3
45.82
17%
48
* C12 *
-
1Y8R
1
SUMO1_HUMAN
C:
[14-97]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
D
K
K
-----
E
G
-
E
--
Y
I
K
L
-
K
V
I
G
----------
Q
D
-----------------------
S
S
E
---
I
H
F
K
V
K
M
T
T
H
L
K
K
L
K
E
S
Y
C
Q
R
----
Q
G
V
P
M
N
----------------
S
-----
L
R
F
L
F
E
G
--------
Q
--
R
---------
I
A
D
N
H
T
-
P
K
E
L
G
M
E
-----
E
E
-----
D
--
V
I
E
V
Y
-
Q
E
Q
T
G
G---------------------------------------------------------------------------------
66
SP3
45.44
17%
69
- C10 -
-
1PD6
-
A:
[208-301]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
E
K
K
-----
S
T
-
A
FQ
K
K
L
E
-
P
A
Y
Q
V
S
-----
K
G
-
H
K
----
I
R
L
-
T
-----
V
---
E
L
AD
H
D
A
E
V
--
K
W
L
K
---
N
G
Q
E
--
I
------
Q
----
M
S
G
S
K
Y
-----------------------
I
F
E
S
I
G
----------------------
A
K
R
T
L
-
T
I
S
Q
C
S
L
-----
A
D
-----
D
-
A
A
-----
Y
Q
C
V
V
GG
E
K
C
S
T
E
L
F
V
K
E---------------------------------------------------------------------
18
HHSearch
43.59
41%
-222
- C4 -
-
2MCF
-
?
A:
[88-104]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
-
I
T
E
N
C
P
--
P
---------
V
D
G
N
R
C
-
S
V
L
----------------------------------------------------------------------------------------------------------------
58
SP3
42.43
12%
66
- C13 -
-
1CEW
-
CYT_CHICK
I:
[9-116]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G
A
P
V
P
-----
V
D
-
E
--
N
D
E
-----
G
L
Q
-----
R
A
-
L
Q
----
F
A
M
-
A
-----
E
Y
N
R
A
S
--
N
D
--------
K
Y
S
S
R
V
V
R
--
V
I
S
A
K
R
Q
L
----
V
S
G
I
K
Y
----------------
I
--
L
Q
V
E
I
G
R
-
T
T
C
P
---
K
S
S
G
--
D
---------
L
Q
S
--
C
-
E
F
H
D
-
E
P
-----
E
M
-----
A
-
K
Y
T
T
C
T
-
F
V
V
Y
S
IPWLNQIKLLESKCQ-------------------------------------------------------------------
48
Fugue
42.20
8%
41
- C10 -
-
4CSQ
-
?
A:
[1-113]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSHMTT
Q
R
Y
L
-----
L
D
-
E
--
L
E
T
A
-
D
M
L
E
I
D
-----
G
L
-
H
A
----
W
R
F
-
E
-----
L
N
E
N
L
L
--
D
Q
A
D
L
-
A
A
E
A
D
Q
P
F
A
S
E
D
--
W
V
L
A
V
E
S
L
----
D
G
R
T
R
R
----------------
E
--
W
R
F
S
Y
N
A
V
M
E
A
E
-
P
Q
A
D
G
E
-------------------
S
W
R
L
T
T
G
-----
E
G
-----
A
-
Y
Q
L
R
C
L
-
G
A
V
S
A
SGEDE-----------------------------------------------------------------------------
49
Fugue
41.53
17%
88
- C13 -
-
4O7O
-
MAK1_MYCTU
A:
[6-454]
TLATKLP
W
S
D
W
L
S
R
QRWYAGRNRELATVKPG
V
V
V
A
LRHN
L
D
L
V
L
V
D
V
T
Y
TDG
A
T
E
R
Y
Q
V
L
V
G
W
DKAAIGVADDRTGFDALYD
V
A
G
P
Q
F
L
L
S
L
I
VSSAVC
G
T
S
T
GE
V
T
F
T
R
E
P
D
V
E
L
P
F
AAQP
R
V
C
D
A
EQ
S
N
T
S
V
I
F
D
R
R
A
I
L
K
V
F
R
RVSSGIN
P
D
I
E
L
N
R
V
L
T
R
A
GNPHVARLL
G
A
Y
Q
F
GDAL
A
Y
A
L
G
M
V
T
E
Y
EANAAE
G
W
A
M
A
T
A
S
V
R
D
L
F
A
EGDLYAHEVGGDF
A
G
E
S
Y
R
L
G
E
A
V
A
S
V
H
A
T
L
A
D
S
L
G
T
A
Q
A
T
F
P
V
D
-----
R
M
-
L
--
A
R
L
S
-
S
T
V
A
V
V
-----
P
E
-
L
R
----
E
Y
A
-
P
-----
T
I
E
Q
Q
F
--
Q
K
L
A
A
-
E
A
I
T
V
Q
R
V
H
G
D
L
------
H
L
G
Q
----
V
L
R
T
P
E
----------------
S
--
W
L
L
I
D
F
E
-------
G
E
P
G
Q
--
P
---------
L
D
E
R
R
----
A
P
D
S
P
-----
L
R
-----
D
V
A
G
V
L
R
S
-
F
E
Y
A
A
YGPLVDQATDK
Q
L
A
A
R
A
R
E
W
V
E
R
N
R
A
A
F
C
D
G
Y
A
V
A
S
GIDPRDS
A
L
L
L
G
A
Y
E
L
D
K
A
V
Y
E
T
G
Y
ETRHRPGW
L
P
I
P
L
R
S
I
A
R
L
T
A
14
PsiBlast_PDB
41.27
35%
-114
- C6 -
-
5MMH
-
AMPR_PSEAE
A:
[39-75]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
F
-
I
D
----
L
R
L
-
S
-----
T
H
N
N
R
V
--
D
I
A
A
E
-
G
L
D
Y
A
I
R
F
G
G
G
A
--
W
H
G
T
E
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
51
Fugue
39.69
12%
35
* C9 *
-
2JE3
1
?
A:
[2-171]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGV
A
E
F
N
DKG
E
L
L
LPKNYR
E
W
V
M
-----
V
G
-
T
--
Q
V
T
P
-
T
E
I
R
T
V
-----
Y
V
-
D
P
----
E
S
Y
-
A
-----
H
W
K
K
T
G
--
E
F
R
D
G
-
T
V
T
V
K
E
L
V
S
V
G
D
--
R
K
G
P
N
G
Y
F
----
M
G
D
Y
I
G
L
E
A
S
V
K
D
SQRFANEPG
N
--
W
A
F
Y
I
F
Y
V
P
D
T
P
-
L
V
A
A
A
K
--
N
---------
L
P
T
A
E
C
A
A
C
H
K
E
N
A
-----
K
T
-----
D
-
M
V
F
T
Q
F
-
Y
P
V
L
R
A
A
K
A
TGESGVVA----------------------------------------------------------------------
6
PsiBlast_PDB
36.38
41%
-77
- C16 -
-
5IYB
-
TF2AA_HUMAN
N:
[328-351]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
F
D
T
E
N
--
V
V
V
C
Q
Y
D
K
----
I
H
R
S
K
N
----------------
K
--
W
K
F
------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
36.33
41%
-91
- C16 -
-
5IY8
-
TF2AA_HUMAN
N:
[328-351]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
F
D
T
E
N
--
V
V
V
C
Q
Y
D
K
----
I
H
R
S
K
N
----------------
K
--
W
K
F
------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
36.30
41%
-91
- C16 -
-
5IYC
-
TF2AA_HUMAN
N:
[328-351]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
F
D
T
E
N
--
V
V
V
C
Q
Y
D
K
----
I
H
R
S
K
N
----------------
K
--
W
K
F
------------------------------------------------------------------------------------------------------------------------------------------------------
47
Fugue
36.23
70%
-
- C2 -
-
1FYN
-
?
B:
[1-10]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
P
A
Y
-----
P
P
-
P
--
P
V
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
35.98
40%
88
- C8 -
-
5VAD
-
SYEP_HUMAN
A:
[350-402]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
D
N
Y
----------------
S
P
G
W
K
F
N
H
W
E
L
K
G
V
P
-
I
R
L
E
V
G
--
P
---------
R
D
M
K
S
C
-
Q
F
V
A
V
R
R
-----
D
------------------------------------------------------------------------------------------------------