@TOME V2.3
(Mar 2018)
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : MGG_15106T0: (2018-03-19 )
PATTQPNNILAGLPTQPANPPPKIQYDLCKVLLWKDKKEKFGNEGISSGFGSPGNTVRVWMHPGLAAVFQLSEEGCEGKFIGGELDQGKTRTPLSKGDPRLMEALKDYKGAVFPEPHGDATMIKW
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10---.----....---.------...20---...------......30...-......40.------...----..-..50-......--------------------...-60-..-......70......-...80--..----------------..--..-..90-------.-.......----.100....-------.---..110-.-------...--....120...---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PATTQPNN
I
L
----A----GLPT---Q------PANP----PP
K
------
I
Q
Y
D
L
C
K
-
V
L
L
-W
K
D
K
K
E
KFG------NEG----IS-SGF--GSPG
N
T
--------------------
V
R
V
-
W
M-HP-
G
L
A
A
V
F
Q
-
L
S
EEGC-EGKFI--GG----------------EL--DQ-GKT--------R-TPLSKG
D
----
P
R
L
M
E
A
L
K
-------D---YKGA--V-------FPE--PHGDATMIKW---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
SP3
74.54
18%
0
- C- -
-
1JJ2
-
RL24_HALMA
S:
[1-119]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
K
Q
P
D
K
Q
R
----
K
----
S
Q
-------------
R
R
A
----
P
L
H
------
E
R
H
K
Q
V
R
-
A
T
L
-
S
A
D
L
R
E
E
Y
G
QRNVRV
N
A
G
D
T
V
E
V
L
-
R
G
D
FA
G
E
E
G
E
V
--------------------
I
N
V
-
D
L
-
D
K
-
A
V
I
H
V
E
D
-
V
T
L
E
K
T
-
D
G
E
E
V
--
P
R
----------------
P
L
--
D
T
-
S
N
V
--------
R
V
T
D
L
D
L
E
D
----
E
K
R
E
A
R
L
E
-------
S
---
E
D
D
S
--
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
43
SP3
71.60
19%
0
- C- -
-
1NLX
-
MPAP6_PHLPR
A:
[4-107]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
T
T
E
E
Q
K
L
I
E
D
V
N
A
----
S
F
R
A
A
M
A
T
------
T
A
N
V
----
P
P
A
------
D
K
Y
K
T
F
E
-
A
A
F
-
T
V
S
S
K
R
N
L
A
-------
D
A
----
V
S
-
K
A
-----
P
Q
---------------------------
L
-
V
P
-
K
L
D
E
V
Y
N
-
A
A
Y
N
A
A
-
D
H
A
------------------------------------------
A
P
E
D
K
Y
E
A
F
V
-
L
H
F
S
E
A
L
R
-------
I
---
I
A
G
T
-----------
P
E
--
V
H
A
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
SP3
63.33
18%
34
* C5 *
-
1XN8
-
YQBG_BACSU
A:
[1-131]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
L
I
T
P
D
E
L
K
S
Y
--
S
----
V
F
E
S
---
V
------
K
T
R
P
----
D
E
L
------
L
K
Q
D
I
L
E
-
A
T
A
---
D
I
I
L
K
V
G
------
H
D
F
----
S
D
-
A
E
Y
--
I
P
L
P
E
T
--------------------
V
R
L
-
A
L
-
L
K
--
L
S
Q
F
Y
A
-
L
-
I
N
G
D
-
E
S
I
I
K
--
G
Y
----------------
T
T
--
E
K
I
G
D
Y
--------
S
-
Y
T
L
G
D
G
S
SLQK
P
D
V
Y
A
L
I
K
-------
D
---
Y
V
K
P
--
A
-------
D
P
D
--
L
E
G
I
E
A
K
V
R
M
R
S
I------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
61.00
15%
-29
- C5 -
-
1ZTS
-
YQBG_BACSU
A:
[1-139]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
L
I
T
P
D
E
L
K
----
S
----
Y
S
V
F
---
E
------
S
V
K
T
----
R
P
D
------
E
L
L
K
Q
D
I
-
L
E
A
-
T
A
D
I
I
L
K
V
G
------
H
D
F
----
S
D
-
A
E
Y
--
I
P
L
P
E
T
--------------------
V
R
L
-
A
L
-
L
K
--
L
S
Q
F
Y
A
-
L
I
N
G
D
E
-
S
I
I
K
G
--
Y
T
----------------
T
E
--
K
I
-
G
D
Y
--------
S
-
Y
T
L
G
D
G
S
SLQK
P
D
V
Y
A
L
I
K
-------
D
---
Y
V
K
P
--
A
-------
D
P
D
--
L
E
G
I
E
A
K
V
R
M
R
S
ILEHHHHHH----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
56.81
19%
72
- C5 -
-
4R8A
-
FAN1_PSEAE
A:
[16-553]
LPEPF
Y
Y
L
H
N
F
R
A
V
L
A
W
I
G
E
RYADLLD
D
Q
E
R
A
F
I
A
A
F
A
E
LP
E
A
S
Q
A
L
L
V
R
M
V
M
RKGTLFREGKLAYAEIGD
T
R
A
A
V
Q
P
L
L
A
L
GWVDAQ
P
T
L
E
L
A
Q
L
F
G
L
L
K
K
D
E
L
S
Q
L
F
RDHLGR
A
N
L
R
K
D
A
L
L
E
R
L
Q
PLFP
E
A
R
R
LAEWQADFA
E
P
V
Y
E
L
RC
M
A
L
C
D
R
L
R
L
M
Y
FGNLWQDWS
E
F
V
L
A
D
L
GI
Y
R
Y
E
SVEFSADSRGFRL
R
A
D
V
D
A
Y
L
H
L
F
D
C
R
Q
R
F
D
L
G
E
P
L
E
E
L
L
----
A
----
G
L
P
G
---
E
------
P
-
Y
A
----
N
P
W
------
L
E
G
R
R
V
K
-
L
L
F
Q
F
A
Q
H
C
E
K
Q
R
------
D
F
D
----
L
A
-
Q
R
L
Y
R
Q
S
S
H
P
G
--------------------
A
R
L
-
R
A
-
I
R
-
S
L
E
R
G
E
R
-
F
A
E
A
H
A
-
L
A
R
E
A
--
S
C
----------------
A
P
--
E
S
-
D
A
E
--------
R
-
Q
G
L
A
R
L
L
----
P
R
L
Q
G
K
L
G
-------
L
---
P
R
Q
A
--
R
-------
A
A
A
--
P
E
I
D
R
L
D
L
C
L
AFPSEPCS
V
E
W
A
V
R
E
H
L
EEPG
C
A
V
H
Y
V
E
NGL
I
N
S
L
F
G
L
L
C
W
EAIFAAIPGAFFHPFHSAPADLHSAD
F
R
Q
R
R
A
A
L
F
E
A
C
L
G
R
L
E
D
G
S
Y
R
D
A
I
R
C
R
Y
R
D
KFGLQSPFVYWELLG
E
E
L
L
E
Q
A
L
D
CLP
A
A
H
L
R
A
W
F
E
R
L
L
E
DIPGNRAGLPD
L
I
Q
F
WPAQR
R
Y
R
M
V
E
V
K
G
PGDRLQ
D
N
Q
L
R
W
L
Q
F
C
R
E
R
E
M
P
V
A
V
C
Y
V
33
Fugue
56.11
16%
11
* C10 *
-
5CV0
-
MMAD_HUMAN
A:
[118-296]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
Y
V
N
E
Q
E
I
----
N
----
S
A
E
T
---
Y
------
F
E
S
A
----
R
V
E
------
C
A
I
Q
T
C
P
-
E
L
L
-
R
K
D
F
E
S
L
F
P
------
E
V
A
----
N
G
-
K
L
M
--
I
L
T
V
T
Q
K
T
KNDMTVWS
E
E
V
E
I
E
R
E
V
L
L
E
K
-
F
I
-
N
G
-
A
K
E
I
C
Y
A
-
L
R
A
E
G
Y
-
W
A
D
F
I
--
D
P
SSGLAFFGPYTNNTLF
E
T
--
D
E
-
R
Y
R
--------
H
-
L
G
F
S
V
D
D
----
L
G
C
C
K
V
I
R
H
SLWGTH
V
---
V
V
G
S
--
I
-------
F
T
N
--
A
T
P
D
S
H
I
M
K
K
L
S
GN-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
SP3
54.85
18%
-43
- C5 -
-
1QH4
-
KCRB_CHICK
A:
[1-101]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
F
S
N
S
H
N
L
L
K
----
M
----
K
Y
S
V
---
D
------
D
E
Y
P
----
D
L
S
------
V
H
N
N
H
M
A
-
K
V
L
-
T
L
D
L
Y
K
K
L
R
------
D
R
Q
----
T
S
-
S
G
F
-------
T
-------------------------------
L
D
D
V
I
Q
-
T
G
V
D
N
P
-
G
H
P
F
I
--
M
T
------------------------------------
V
G
C
V
A
G
D
----
E
E
S
Y
E
V
F
K
-------
E
---
L
F
D
P
--
V
-------
I
E
D
--
R
H
G
G
Y
K
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
54.62
22%
-25
- C5 -
-
5DOQ
1
?
B:
[1-330]
----------------------------------------------------------------------------------------------------------------------------------------------M
T
L
E
V
I
G
I
S
V
L
W
L
F
L
F
G
Y
I
I
V
A
S
I
D
F
G
A
G
F
F
S
V
Y
S
H
WANQQ
H
I
L
H
R
I
I
Q
R
Y
L
S
P
V
W
E
V
T
N
V
F
L
V
F
F
F
V
G
I
V
G
F
F
P
K
T
A
Y
Y
Y
G
S
I
----
L
----
L
V
P
A
---
S
------
I
A
I
V
----
L
L
A
------
I
R
G
S
Y
Y
A
-
F
H
T
-
Y
G
E
T
E
R
N
W
-------------------
Y
--
L
L
A
Y
G
L
--------------------
T
G
L
-
F
I
-
P
A
-
S
L
S
I
V
L
T
-
I
S
E
G
G
F
V
E
E
N
A
A
--
G
V
----------------
A
L
--
D
Y
-
G
K
L
F-------
A
-
S
P
L
S
W
S
V
----
V
L
L
S
V
T
S
V
-------
L
---
Y
I
S
A
--
V
-------
F
L
T
--
Y
Y
A
D
A
A
G
D
E
Q
A
R
A
L
L
R
R
Y
A
L
L
W
S
G
P
T
M
L
S
A
L
L
I
I
Y
Q
L
R
Y
H
N
P
E
H
Y
D
N
L
W
N
V
A
W
M
L
V
I
S
F
L
F
F
V
I
T
V
W
L
L
G
RQRRF
G
W
A
F
I
A
L
L
F
Q
Y
A
F
A
F
Y
A
Y
G
I
S
H
YPYLLYPYLTIYDGFTNE
T
M
A
M
A
L
I
V
A
F
I
A
G
L
L
L
L
I
P
S
L
Y
L
L
M
R
L
F
L
FNK----------------------------------------------------------
37
SP3
54.44
16%
-132
- C4 -
-
1QFJ
1
FRE_ECOLI
A:
[1-97]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
T
L
S
C
K
V
T
----
S
-------
V
---
E
------
A
I
T
D
----------------
T
V
Y
R
-
V
R
I
-
V
P
D
A
A
F
S
F
-----------------------
R
A
G
Q
Y
--------------------
L
M
V
-
V
M
-
D
E
-
R
D
K
R
P
F
S
-
M
A
S
T
P
D
-
E
K
G
F
I
--------------------
E
L
--
H
I
-
G
Y
A
---------------------
K
A
V
M
D
R
I
L
-------
K
---
D
H
Q
I
--
V
-------
V
D
I
--
P
H
G
E
A
W
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
42
SP3
53.07
17%
80
- C10 -
-
1H72
2
KHSE_METJA
C:
[164-296]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
K
L
D
I
L
I
----
A
IPNI
S
I
N
T
---
K
EAREIL
P
K
A
V
----
G
L
K
DLVNNV
G
K
A
C
G
M
V
-
Y
A
L
-
Y
N
K
D
K
S
L
F
G
------
R
Y
M
----
M
S
-
D
K
V
--
I
E
P
-----------------------
V
R
G
-
K
L
-
I
P
-
N
Y
F
K
I
K
E
-
E
V
K
D
K
V
-
Y
G
I
T
I
--
S
G
----------------
S
------
G
P
S
--------
I
-
I
A
F
P
K
E
E
FI--
D
E
V
E
N
I
L
R
-------
D
---
Y
Y
E
N
--
T
-------
I
R
T
--
E
V
G
K
G
V
E
V
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
SP3
51.37
10%
-8
- C8 -
-
1D4T
-
SH21A_HUMAN
A:
[1-104]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
D
A
---
V
------
A
V
Y
-----
H
G
K
------
I
S
R
E
T
G
E
-
K
L
L
-
L
A
-----
T
G
------
L
D
G
S
Y
L
-
L
R
-
D
S
E
--
S
V
P
G
V
Y
--------------------
C
L
C
-
V
L
-
Y
H
-
G
Y
I
Y
T
Y
R
-
V
S
Q
T
E
--
T
G
S
W
S
--
A
E
----------------
T
A
--
P
G
-
V
H
K
--------
R
-
Y
F
R
K
---------
I
K
N
L
I
S
-------
A
---
F
Q
-------------
K
P
--
D
Q
G
I
V
I
P
L
Q
Y
PVEK-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
39
SP3
50.35
16%
21
- C8 -
-
1UEQ
-
A:
[1-123]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
S
G
S
------
S
----
G
L
F
T
---
R
------
D
A
S
Q
----
L
K
---------
G
T
F
L
S
-
T
T
L
-
K
K
S
N
----
M
------
G
F
G
----
F
T
I
I
G
G
--
D
E
P
D
E
F
--------------------
L
Q
V
-
K
S
V
I
P
-
D
G
P
A
A
Q
D
G
K
M
E
T
G
D
-
V
I
V
Y
I
--
N
E
----------------
V
C
--
V
L
-
G
H
T
H
A
D
V
V
K
L
F
Q
-
S
-
V
P
I
G
Q
----
S
V
N
L
V
L
C
R
-------
G
---
Y
P
L
P
--
F
-------
D
P
E
--
D
P
A
N
S
G
P
S
S
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
SP3
44.48
16%
87
* C8 *
-
1VA8
-
A:
[1-113]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G
S
S
G
S
S
G
P
-------------
I
T
D
E
---
R
------
V
Y
E
S
----
I
G
H
------
Y
G
G
E
T
V
K
I
V
R
I
-
E
K
A
R
-----------
D
I
P
----
L
G
-
A
T
V
--
R
N
E
M
D
S
--------------------
V
I
I
S
R
I
-
V
K
-
G
G
A
A
E
K
S
G
L
L
H
E
G
D
-
E
V
L
E
I
--
N
G
----------------
I
E
--
I
R
-
G
K
D
--------
V
------------
N
E
V
F
D
L
L
S
-------
D
---
M
H
G
T
--
L
T
F
V
L
I
P
S
S
G
P
--
S
S
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
41
SP3
44.41
16%
42
- C3 -
-
1WH4
-
IRAK4_MOUSE
A:
[1-127]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
S
G
S
S
G
------
M
----
N
K
P
L
---
T
------
P
S
T
Y
IRNL
N
V
G
------
I
L
R
K
L
S
D
-
F
I
D
-
P
Q
E
G
W
K
K
L
A
-------
V
A
----
I
K
-
K
P
S
--
G
D
D
R
Y
N
------------------------
Q
F
-
H
---
I
R
R
F
E
A
-
L
L
Q
T
G
K
-
S
P
T
-----
C
----------------
E
L
L
F
D
W
-
G
T
T
--------
N
-
C
T
V
--------
G
D
L
V
D
L
L
V
-------
Q
I
EL
F
A
P
A
T
L
L
-------
L
P
D
AV
P
Q
T
V
K
S
L
P
P
S
GPSSG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
42.08
26%
-102
- C6 -
-
5UQE
-
GLSK_HUMAN
D:
[7-48]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
F
Y
-
T
I
A
E
G
--
Q
E
K
I
P
--
V
H
----------------
K
F
--
I
T
-
A
L
K
--------
S
-
T
G
L
R
T
S
D
----
P
R
L
K
E
C
M
D
-------
M
---
L
R
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
40.88
26%
-94
- C6 -
-
5UQE
-
F:
[7-48]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
F
Y
-
T
I
A
E
G
--
Q
E
K
I
P
--
V
H
----------------
K
F
--
I
T
-
A
L
K
--------
S
-
T
G
L
R
T
S
D
----
P
R
L
K
E
C
M
D
-------
M
---
L
R
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
40.59
28%
118
- C6 -
-
1ZBX
-
SIR1_YEAST
B:
[485-548]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
E
E
E
Y
V
-
S
P
R
F
L
V
A
D
G
----------------
F
L
--
I
D
-
L
A
E
--------
E
-
K
P
I
N
P
K
D
----
P
R
L
L
T
L
L
K
-------
D
---
H
Q
R
A
--
M
-------
I
D
Q
------
M
N
L
V
K
W
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
39.31
28%
160
- C- -
-
1Z1A
-
SIR1_YEAST
A:
[484-548]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
-
T
E
E
E
Y
V
-
S
P
R
F
L
V
A
D
G
----------------
F
L
--
I
D
-
L
A
E
--------
E
-
K
P
I
N
P
K
D
----
P
R
L
L
T
L
L
K
-------
D
---
H
Q
R
A
--
M
-------
I
D
Q
------
M
N
L
V
K
W
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
37.77
27%
146
- C6 -
-
1ZHI
-
SIR1_YEAST
B:
[487-537]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
Y
V
-
S
P
R
F
L
V
A
D
G
----------------
F
L
--
I
D
-
L
A
E
--------
E
-
K
P
I
N
P
K
D
----
P
R
L
L
T
L
L
K
-------
D
---
H
Q
R
A
--
M
-------
I
D
Q
------
M
N
L
V
K
W
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
37.38
40%
-114
* C6 *
-
2D0O
-
DDRFA_KLEOK
C:
[202-227]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
V
P
G
K
V
--------------------
I
E
T
-
L
S
-
N
P
Y
G
I
A
T
V
F
N
-
L
S
P
E
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------