@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : MGG_15575T0: (2018-03-19 )
PEHCFVRILKYEIPIHGDGYLVGSDVNWWVGNQKVDFHINNDCTIQRRGGTQEKKPYRLDSISTLGEDLPKGFDFILFRESKIDEFLAQGGVTKRILGSMIL
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------...-.--...-..10---.........----20........--30.-----------....----------...40------.......----.50--...-----.---.....60...-----...-..70.-----.....--------.---.---80.-.......--90---......---..-.100-------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------PE
H
-
C
--
F
V
R
-
I
L
K
----
Y
E
I
P
IHGD
G
----
Y
L
VGSD
V
N
W
W
--VGN-----------
Q
K
V
D
----------
F
H
INN------
D
C
T
I
Q
RR----GG---TQE-----K---KPYRL
D
S
I
S
T
-----
L
G
E
-DLPKG-----F
D
F
I
L
--------
F
---R---
E
S
K
-
I
D
E
F
L
A
Q--G----G
V
T
K
R
I
---
L
G
-SMIL-------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
72.96
15%
-
- C8 -
-
4KT3
-
?
A:
[29-177]
---------------------------------------------------------------------------------------------------------------------------ARLCNN
I
S
A
V
T
F
V
S
K
Y
K
A
V
-
C
--
Q
P
I
-
A
D
Q
----
L
D
L
P
V
E
N
L
L
----
G
L
A
A
Q
E
S
Q
Y
----
G
T
-----------
G
R
I
A
----------
R
E
L
N
N
YFSMHA
P
A
P
L
Q
I
G
----
A
E
---
A
P
S
-----
I
---
K
V
A
K
F
D
S
F
Q
K
-----
S
A
Q
-
S
F
A
S
S
-----
F
G
T
A
V
RGQRD
P
M
A
F
---
A
---
Q
A
L
-
V
R
S
G
Y
N
T
--
G
NGRD
G
F
A
R
Y
L
---
A
D
-
I
I
I
A
V
R
G
R
M
A
C------------------------------------------------------------------------------------------------------------------------------------------------
38
SP3
54.31
10%
-127
- C6 -
-
1B6A
1
?
?:
[375-448]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
D
D
M
------
E
C
S
H
Y
M
K
----
N
F
---
D
V
G
-----
H
---
V
P
I
R
L
P
R
T
K
H
-----
L
L
N
-
V
I
N
E
N
-----
F
G
T
L
A
--------
F
---
C
---
R
R
W
-
L
D
R
-
L
G
E
--
S
----
K
Y
-
L
M
A
---
L
K
-
N
L
C
D
L
GI
V
D
P
Y
P
PLC--------------------------------------------------------------------------------------------------------------------------------------------
39
SP3
54.10
20%
-12
- C5 -
-
1JS8
2
HCYG_ENTDO
A:
[290-390]
-------------------------------------------------------------------------------------------------------------------------------------------
E
D
R
-
V
--
F
A
G
-
F
L
---------
L
R
T
I
G
------
Q
S
A
D
V
N
F
D
--
V
C
T
-----------
K
----------------
D
G
------
E
C
T
F
G
G
T
F
C
I
L
G
G
---
E
H
E
M
F
W
A
F
D
---
R
L
F
K
Y
D
I
T
T
S
-----
L
K
H
L
R
L
D
A
H
-----
D
D
F
D
I
--------
K
---
V
---
T
I
K
---------------
G
I
D
G
H
V
---
L
S
-
N
K
Y
L
S
P
P
T
V
F
L
A
P
A---------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
52.88
15%
10
- C6 -
-
4F55
-
A:
[1-128]
-----------------------------------------------------------------------------------------------------------------------------GGGRTNVPNGYS
Q
N
D
I
Q
-
L
--
M
A
N
-
A
V
Y
----
G
E
S
--
R
G
E
P
----
Y
L
G
Q
V
A
V
A
A
V
--
I
L
N
-----------
R
V
T
S
ASFPNT
V
S
G
V
I
F
E
P
R
------
A
F
T
A
V
A
D
----
G
Q
IYL
T
P
N
-----
E
---
T
A
K
K
A
V
L
D
A
I
-----
N
G
W
-
D
P
T
G
N
-----
A
L
Y
Y
F
--------
N
---
P
---
D
T
A
-
T
S
K
W
I
W
T
--
R
----
P
Q
I
K
K
I
----
G
-
K
H
I
F
C
K-----------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
52.79
30%
-40
- C4 -
-
1HA8
-
MER23_EUPRA
A:
[1-51]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
E
-----------
C
E
Q
C
----------
F
S
D
G
G
------
D
C
T
T
C
F
N
----
N
G
---
T
----------------
G
P
C
A
N
-----
C
L
A
-
G
Y
P
A
G
-----
C
----------------
S
---
N
S
D
-
C
T
A
F
L
S
Q
C
Y
G
----
G
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
SP3
52.77
13%
-118
- C5 -
-
1QFJ
1
FRE_ECOLI
A:
[1-97]
--------------------------------------------------------------------------------------------------------------------------------------------
T
T
-
L
--
S
C
K
-
V
T
S
----
V
E
-
A
I
T
D
T
V
----
Y
R
V
-----
R
I
--
V
P
D
-----------
A
A
F
S
----------
F
R
A
G
Q
------
Y
L
M
V
V
M
D
----
E
R
-----
D
-----
K
---
R
P
F
---
S
M
A
S
----------
T
P
D
E
-----
K
G
F
I
E
--------
L
---
H
I
GY
A
K
A
-
V
M
D
R
I
L
K
--
D
----
H
-
Q
I
V
V
D
I
P
H
G
-
E
A
W
L
-------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
51.86
13%
-36
* C6 *
-
1PUO
2
FEL1A_FELCA (first)
A:
[5-164]
--------------------------------------------------------------------------------------------------------------------------------------------
E
T
-
C
--
P
I
F
-
Y
D
V
----
F
F
A
V
A
N
G
N
E
----
L
L
L
D
L
S
L
T
K
V
NA
T
E
P
-----------
E
R
T
A
----------
M
K
K
I
Q
------
D
C
Y
V
E
N
G
----
L
I
---
S
R
V
-----
L
---
D
G
L
V
M
T
T
I
S
S
SKDCE
I
C
P
-
A
V
K
R
D
-----
V
D
L
F
L
--------
T
---
G
T--
P
D
E
-
Y
V
E
Q
V
A
Q
--
Y
----
K
A
L
P
V
V
---
L
E
-
N
A
R
I
L
K
N
C
V
D
A
K
MT
E
E
D
K
E
N
A
L
S
L
L
D
K
I
Y
T
SPLCLE-----------------------------------------------------------------------------------------------------------------------
35
SP3
49.85
13%
-98
- C5 -
-
1PTF
-
?
?:
[1-87]
------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
K
----
K
E
F
H
I
V
A
E
T
----
G
I
H
A
R
P
A
T
L
L
--
V
-------------
Q
T
A
S
-----------
K
F
N
S
------
D
I
N
L
E
Y
K
----
G
K
---
S
V
N
-----
L
---
K
--
S
I
M
G
V
M
S
-----
L
G
---
V
G
Q
G
------
S
D
V
T
--------
I
---
T
---
V
D
G
-
A
D
E
A
E
G
M
--
A
----
A
I
V
E
T
L
---
Q
K
-
E
G
L
A
-------------------------------------------------------------------------------------------------------------------------------------------------------
37
SP3
48.07
17%
18
- C6 -
-
1JFL
-
RACD_PYRHO
A:
[1-115]
--------------------------------------------------------------------------------------------------------------------------------M
K
T
I
G
I
LGGMG
P
L
A
-
T
A
E
L
F
R
-
R
I
V
----
I
K
T
P
A
K
R
D
Q
E
H
P
K
V
I
I
F
N
N
P
Q
-----------------------------------
I
P
------
D
R
T
A
Y
I
L
----
G
K
---
G
E
D
-----
P
---
R
P
Q
L
I
W
T
A
K
R
-----
L
E
E
----
C
G
-----
A
D
F
I
I
--------
M
---
P
---
C
N
T
-
A
H
A
F
V
E
D
--------
I
R
K
A
I
---
K
I
-
P
I
I
S
M
I
E
E
T
A
K
K
V
K
E
L
G------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
47.44
26%
-168
- C7 -
-
2XND
1
ATPA_BOVIN
C:
[382-415]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
A
A
F
A
Q
-----
F
G
S
-
D
L
D
A
A
-----
T
Q
Q
L
L
--------
S
---
R
---
G
V
R
-
L
T
E
L
L
K
Q
--
G
----
Q
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
47.43
31%
-23
- C9 -
-
4V8V
-
?
A:
[2596-2630]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
S
------
D
W
E
V
T
R
K
----
A
G
---
T
E
I
-----
R
---
V
P
R
K
T
K
L
S
R
T
-----
V
G
A
-
Q
I
P
T
G
-----
F
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
47.28
31%
-23
* C9 *
-
4V8W
-
?
D:
[2596-2630]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
S
------
D
W
E
V
T
R
K
----
A
G
---
T
E
I
-----
R
---
V
P
R
K
T
K
L
S
R
T
-----
V
G
A
-
Q
I
P
T
G
-----
F
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
46.95
22%
-118
* C7 *
-
5LUS
-
?
A:
[19-68]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
---
M
E
Q
-----
Q
---
L
Y
A
V
M
D
D
I
C
K
-----
L
V
D
-
A
I
P
--------
L
H
E
L
--------
E
---
M
---
L
S
C
-
A
K
E
L
L
L
Q
--
R
----
G
L
R
R
K
L
---
L
A
-
N
A
V
D
-------------------------------------------------------------------------------------------------------------------------------------------------------
33
SP3
46.54
15%
16
* C5 *
-
1NO5
1
Y073_HAEIN
A:
[6-105]
--------------------------------------------------------------------------------------------------------------------------------------QLDIK
S
E
E
L
A
--
I
V
K
T
I
L
Q
----
Q
L
V
P
-
D
Y
T
V
----
W
A
F
G
S
R
V
K
-----
G
K
-------------------------
A
K
K
Y
S
------
D
L
D
L
A
I
I
----
S
E
---------------
E
P
L
D
F
L
A
R
D
R
-----
L
K
E
-
A
F
S
E
S
DLP
W
R
V
D
L
L
D
--------
W
ATT
S
---
E
D
F
-
R
E
I
I
R
K
V
--
Y
----
V
V
I
Q
E
K
---
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
46.35
22%
-56
- C6 -
-
4BWZ
-
?
A:
[3-386]
G
A
E
H
L
L
E
I
F
Y
L
L
L
A
A
Q
V
C
A
F
I
F
K
R
L
NQP
V
V
I
G
E
V
L
A
G
V
L
V
GPALLGLVHEG
E
I
L
E
F
L
A
E
L
G
A
V
F
L
L
F
M
V
G
L
E
TR
L
K
D
I
L
A
V
G
K
E
A
F
L
V
A
V
L
G
V
A
L
P
F
L
G
G
Y
L
Y
G
L
E
I
GFE
T
L
P
A
L
F
L
G
T
A
L
V
ATSV
G
I
T
A
R
V
L
Q
E
L
GVL
S
R
P
-
Y
--
S
R
I
-
I
L
G
----
A
A
V
I
D
D
V
L
G
----
L
I
V
L
A
C
V
N
G
V
--
A
E
T
-----------
G
Q
V
E
---------------------
V
G
A
I
T
R
L
----
I
V
---
L
S
V
-----
V
---
F
V
G
L
A
V
F
L
S
T
-----
L
I
A
-
R
L
P
L
E
-----
R
---
L
--------
P
---
V
---
G
S
P
-
L
G
F
A
L
A
L
--
G
----
V
G
M
A
A
L
---
A
A
-
S
I
G
L
A
P
I
V
G
A
F
L
G
G
M
L
L
S
EVREKYRL
E
E
P
I
F
A
I
E
S
F
L
A
P
I
F
F
A
M
V
G
V
R
LELSALASP
V
V
L
V
A
G
T
V
V
T
V
I
A
I
L
G
K
V
L
G
G
F
L
G
A
LTQG
V
R
S
A
L
T
V
G
C
G
M
APRG
E
V
G
L
I
V
A
A
L
G
L
K
A
GAVN
E
E
E
Y
A
I
V
L
F
M
V
V
F
T
T
L
F
A
P
F
A
L
K
P
L
I
A
W
T
E
R
E
R
A
A
K
E
36
SP3
45.87
14%
32
- C8 -
-
2TRX
4
THIO_ECOLI
A:
[1-108]
-------------------------------------------------------------------------------------------------------------------------------------------
S
D
K
-----
I
I
-
H
L
T
DDSF
D
T
D
V
L
K
A
D
G
----
A
I
L
---
V
D
F
W
--
A
E
W
C
G
P
C
K
M
I
A
P
I
L
D
E
I
A
----------
D
E
Y
Q
G
------
K
L
T
V
A
K
L
----
N
I
---
D
Q
N
-----
P
GTA
P
K
Y
G
I
R
G
I
P
T
---------------------
L
L
L
--------
F
---
K
---
N
G
E
V
A
A
T
K
--
V
--
G
----
A
L
S
K
G
Q
---
L
K
-
E
F
L
D
A
N
LA---------------------------------------------------------------------------------------------------------------------------------------------------
41
SP3
44.75
12%
-23
* C8 *
-
1OAC
-
AMO_ECOLI
A:
[5-88]
--------------------------------------------------------------------------------------------------------------------------------------------------------
A
----
H
M
V
P
M
D
K
T
L
----
K
E
F
G
A
D
V
Q
W
D
--
D
Y
A
-----------
Q
L
F
T
----------
L
I
K
D
-------
G
A
Y
V
K
V
K
----
P
G
---
A
Q
T
A
I
V
N-
G
---
Q
P
L
A
L
Q
V
P
V
V
-----
M
K
D
-----
N
-----
K
A
W
V
S
--------
D
---
T
-----
F
-
I
N
D
V
F
-
Q
--
S
----
G
L
D
Q
T
F
---
Q
V
-
E
----------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
44.46
25%
-27
- C7 -
-
1A8S
1
PRXC_PSEFL
A:
[54-105]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
R
----
G
H
---
G
R
S
-----
S
---
Q
P
W
S
G
N
D
M
D
T
-----
Y
A
D
-
D
L
A
Q
L
-----
I
E
H
L
D
--------
L
---
R
---
D
A
V
-
L
F
G
F
S
T
G
--
G
----
G
E
V
A
R
Y
---
I
G
------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
44.31
31%
0
- C- -
-
4V8L
-
?
D:
[2958-2630]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
S
------
D
W
E
V
T
R
K
----
A
G
---
T
E
I
-----
R
---
V
P
R
K
T
K
L
S
R
T
-----
V
G
A
-
Q
I
P
T
G
-----
F
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
44.06
11%
-70
- C- -
-
1AGQ
-
GDNF_RAT
A:
[39-135]
-------------------------------------------------------------------------------------------------------------------------------------------
N
R
G
-
C
--
V
L
T
-
A
I
H
----
L
N
V
T
D
L
G
L
G
----
Y
E
T
K
E
E
L
I
F
R
--
Y
C
S
-----------------------------
G
------
S
C
---------------
E
A
-----
A
---
E
T
M
Y
D
K
I
L
K
N
-----
L
S
R
-
S
R
V
G
Q
-----
A
C
C
R
P
--------
V
---
A
---
F
D
D
-
D
L
S
F
L
D
D
--
S
----
L
V
Y
H
I
L
---
R
K
H
S
A
K
R
C
G
C
I---------------------------------------------------------------------------------------------------------------------------------------------------