@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : MGG_16175T0: (2018-03-19 )
DCTLGCKYLENNRWVSVSKSANIGDTLYIMGHSTKIGRGCKPETTEWSDAEIYSW
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.....----.-.-..10...-----.-----.....-----20---.--.-......-.-----30-...-----...-...40--..--.-...--------..50....-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DCT
L
G
----
C
-
K
-
Y
LE-NN
R
-----
W
-----
V
S
VSK-----S----A--N-IG
D
T
L
Y
-
I
-----M--GHS-----TKI-GRGCK--PE--T-TEW--------SDAEIYSW-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
SP3
61.56
23%
7
- C12 -
-
1HV9
2
GLMU_ECOLI
A:
[4-452]
N
A
M
S
V
V
I
L
AAGKGTRMYSDLPKVLHTLAGKA
M
V
Q
H
V
I
D
A
A
N
E
L
GAA
H
V
H
L
V
Y
G
H
G
G
D
L
L
K
Q
A
LKDDN
L
N
W
V
L
QAEQLG
T
G
H
A
M
Q
Q
A
APFFADD
E
D
I
L
M
L
Y
GDVPLIS
V
E
T
L
Q
R
L
R
D
A
KPQG
G
I
G
L
L
T
V
K
L
DDPTG
Y
G
R
I
T
R
E
NGKVT
G
I
V
E
HKDAT
D
E
Q
R
Q
IQEINTG
I
L
I
A
N
G
A
D
M
K
R
W
L
A
K
LTNNNAQGEYYITD
I
I
A
L
A
Y
Q
E
G
R
E
I
V
A
V
H
P
QRLSEVEGVNN
R
L
Q
L
S
R
L
E
R
V
Y
Q
S
E
Q
A
E
K
L
L
L
A
G
----
V
-
M
-
L
R
D
-
P
A
R
FDLR
G
T
-----
L
T
H
G
R
-----
D
----
V
--
E
-
I
D
T
N
V
I
-
I
-----
E
--
G
N
V
T
L
G
H
R
V
K
I
-
G
T
G
C
V
I
-
K
N
--
S
-
V
I
G
--------
D
D
C
E
I
S
P
Y
T
V
V
E
D
A
N
L
A
A
A
C
T
I
G
PF
A
R
L
R
PG
A
E
L
L
E
G
A
H
V
G
N
F
V
E
M
K
K
A
R
L
G
KGSKAGHL
T
Y
L
G
D
A
E
I
G
D
N
V
N
I
G
A
GTITCNYDGA
N
K
F
K
T
I
I
G
D
D
V
F
V
G
S
D
T
Q
L
V
A
P
V
T
V
G
K
G
A
T
I
A
AGTTVT
R
N
V
G
EN
A
L
A
I
SRVP
Q
T
Q
K
E
GWRRP-----------------------------------------------
26
Fugue
51.34
16%
-
* C10 *
-
4KDL
-
OTU1_YEAST
B:
[0-73]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
M
K
L
K
----
V
-
T
-
G
A
G
-
I
N
Q
-----
V
-----
V
T
L
K
Q
-----
D
----
A
--
T
-
L
N
D
L
I
E
H
I
-----
N
--
V
D
V
-----
K
T
M
-
R
F
G
Y
P
--
P
Q
--
R
-
I
N
L
--------
S
L
G
Q
T
Q
L
D
ELGINSG
E
K
I
T
I
E------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
49.28
22%
108
- C12 -
-
1SSQ
1
CYSE_HAEIN
A:
[1-241]
---------------------------------------------------------------------MN
L
D
V
W
Q
H
I
R
Q
E
A
K
E
L
A
E
N
E
PML
A
S
F
F
H
S
T
ILKHQN
L
G
G
A
L
S
Y
L
L
A
N
K
L
ANPIMP
A
I
S
L
R
E
I
I
E
E
A
Y
Q
S
NP
S
I
I
D
C
A
A
C
D
I
Q
A
V
R
H
RDPAVELWSTPLLYL
K
G
F
H
A
I
Q
S
Y
R
I
T
H
Y
L
W
N
Q
NR
K
S
L
A
L
Y
L
Q
N
Q
I
S
V
A
F
D
V
D
I
H
PA
A
K
I
G
H
GIMFDHATG
I
V
V
G
ET
S
V
I
E
N
D
V
S
I
L
Q
G
V
T
L
G
----
G
-
T
-
G
K
E
S
G
D
R
-----
H
-----
P
K
V
R
E
-----
G
----
V
--
M
-
I
G
A
G
A
K
-
I
-----
L
--
G
-
N
-----
I
E
V
-
G
K
Y
A
K
--
I
G
--
A
-
N
S
V
--------
V
L
N
P
V
P
E
Y
A
T
A
A
G
VPARIVS-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
47.87
25%
25
- C12 -
-
3EH0
-
LPXD_ECOLI
A:
[1-341]
---------------------------------------------------------------------MASIR
L
A
D
L
A
Q
Q
L
D
A
E
L
H
G
DGDIVIT
G
V
A
S
MQSAQTG
H
I
T
F
M
VNPKYREHLGLCQAS
A
V
V
M
T
QDDLPFAK
S
A
A
L
V
V
KN
P
Y
L
T
Y
A
R
M
A
Q
I
L
DTTPQPAQNIAPS
A
V
I
D
AT
A
K
L
G
N
N
V
S
I
G
A
N
A
V
I
E
S
G
V
E
L
G
D
N
V
I
I
G
A
G
C
F
V
G
K
N
S
K
I
G
A
G
S
R
L
W
A
N
V
T
I
Y
H
E
I
Q
I
G
Q
N
C
L
I
Q
S
G
T
V
V
G
ADGF
G
-
Y
-
A
N
D
-
R
G
N
-----
W
-----
V
K
I
P
Q
I
G
---
R
----
V
--
I
-
I
G
D
R
V
E
-
I
--------
G
A
C
-----
T
T
I
-
D
R
G
A
L
--
D
D
--
T
-
I
I
G
--------
N
G
V
I
I
D
N
Q
C
Q
I
A
H
N
V
V
I
G
D
N
T
A
V
A
G
G
V
I
M
A
G
S
L
K
I
G
R
Y
C
M
I
G
G
A
S
V
I
N
G
H
M
E
I
C
D
K
V
T
V
T
G
MGMVMRPIT
E
P
G
V
Y
S
S
G
I
P
L
QP
N
K
V
W
R
K
T
A
A
L
V
M
N
I
D
D
M
S
K
R
L
K
S
L
E
R
K
V
N
Q
Q
D--------------------------------------------------------------------------------
40
SP3
46.94
18%
43
- C12 -
-
1V3W
4
?
A:
[1-173]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MA
I
Y
E
I
NG
K
K
P
R
I
H
PS
A
F
V
D
EN
A
V
V
I
G
D
V
V
L
E
E
K
T
S
V
W
P
S--
A
-
V
-
L
R
G
-
D
I
E
-----
Q
-----
I
Y
V
G
K
-----
Y
----
S
--
N
-
V
Q
D
N
V
S
-
I
H
T
S
--
H
--
G
Y
P
-----
T
E
I
-
G
E
Y
V
T
--
I
G
--
H
N
A
M
V
--------
H
G
A
K
V
G
N
Y
V
I
I
G
IS
S
V
I
L
D
G
A
K
I
G
D
H
V
I
I
G
AG
A
V
V
P
P
N
K
E
I
P
D
Y
S
L
V
L
G
VPGKVV
R
Q
L
T
E
E
E
I
E
W
T
K
K
N
A
E
I
Y
V
E
L
A
E
K
H
I
K
GRKRI------------------------------------------------------------------------------------------------------------
34
Fugue
46.27
18%
-21
- C12 -
-
4EAB
2
?
A:
[8-218]
---------------------------------------------------------------------------------------------------------ASLA
I
G
G
V
V
I
IGGG
G
H
A
K
V
V
I
E
S
L
R
A
C
G
E
T
V
A
A
I
V
D
ADPTRAVLGVPVVGDDLA
L
P
M
L
R
E
Q
GLS
R
L
F
V
AIGD
N
R
L
R
Q
K
L
G
R
K
A
R
D
H
G
F
S
L
V
N
A
I
H
PS
A
V
V
S
PS
V
R
L
G
E
G
V
A
V
M
A
G
V
A
I
N
A
D
S
W
I
G
D
LAIINTG
A
V
V
D
A
D
C
R
L
G
--------------
A
-----
A
-----
C
H
L
G
P
-----
A
----
S
--
A
-
L
A
G
G
V
S
-
V
--------
G
E
R
-----
A
F
L
-
G
V
G
A
R
--
V
I
---------------
P
G
V
T
I
G
A
D
T
I
V
G
AGGVVV
R
D
L
P
D
S
V
L
A
I
G
VP
A
K
I
K
G
D--------------------------------------------------------------------------------------------------------------------------------------------------------------
37
SP3
45.91
10%
28
- C12 -
-
1J2Z
2
LPXA_HELPY
A:
[2-260]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SKIAKT
A
I
I
S
PK
A
E
I
N
K
G
V
E
I
G
E
F--
C
---
V
I
G
-
D
G
------------
V
K
L
D
E
-----
G
----
V
--
K
-
L
H
N
N
V
T
-
L
--------
Q
G
H
-----
T
F
V
-
G
K
N
T
E
I
F
P
F
--
A
-
V
L
G
--------
T
Q
P
Q
D
L
K
Y
KG
E
Y
S
E
L
I
I
G
E
D
N
L
I
R
E
F
C
M
I
N
P
G
T
EGGIK
K
T
L
I
G
D
K
N
L
L
M
A
Y
V
H
V
A
H
D
C
V
I
G
S
H
C
I
L
A
N
G
V
T
L
A
G
H
I
E
I
G
D
Y
V
N
I
G
G
L
T
A
I
H
Q
F
V
R
I
A
K
G
C
M
I
A
G
K
S
A
L
G
K
D
V
P
P
Y
C
T
V
E
G
NR
A
F
I
RGLN
R
H
R
M
R
Q
L
L
E
S
K
D
I
D
F
I
Y
A
L
Y
K
R
L
F
RPIPS
L
R
E
S
A
K
L
E
L
E
E
H
ANN
P
F
V
K
E
I
C
S
F
I
L
E
SSRGVAYKSS
19
HHSearch
44.02
21%
-345
- C9 -
-
1UEB
-
EFP_THET8
A:
[152-175]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
L
E
-
T
G
A
-----
V
-----
V
Q
V
P
L
-----
F
----
V
--
E
-
P
G
E
V
I
K
-
V
-----
D
--
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
43.43
25%
53
* C11 *
-
1W9Y
-
ACCO1_PETHY
A:
[2-305]
-------------------------------------------------------ENF
P
I
I
S
LDKVNGVE
R
A
A
T
M
E
M
I
K
D
A
C
E
NWG
F
F
E
L
V
NHGIP
R
E
V
M
D
T
V
E
K
M
T
K
G
H
Y
K
K
C
M
E
Q
R
F
K
E
L
V
A
S
K
A
L
E
G
V
Q
A
E
VTDMDW
E
S
T
F
F
L
K
HLPISNISEVPDLD
E
E
Y
R
E
V
M
R
D
F
A
K
R
L
E
K
L
A
E
E
L
L
D
L
L
C
E
N
L
GLEKG
Y
L
K
N
A
F
YGSK
G
P
N
F
G
T
K
V
S
N
Y
P
P
CPKPDLIKG
L
R
A
H
T
D
AG
G
I
I
L
L
F
Q
D
D
K
V
S
G
----
L
-
Q
-
L
L
K
-
D
G
Q
-----
W
-----
I
D
V
P
P
M----
R
H
S
I
V
V
--
N
-
L
G
D
Q
L
E
-
V
-----
I
T
N
G
K
Y
-----
K
S
V
M
H
R
V
I
A
--
Q
K
--
D
-
G
A
R
M
-------
S
L
A
S
F
Y
N
P
GSD
A
V
I
Y
PAPALVQ
V
Y
P
K
F
V
F
D
D
Y
M
K
L
Y
A
GLKFQA
K
E
P
R
F
E
A
M
K
A
----------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
43.17
29%
38
- C3 -
-
5LWG
-
?
D:
[1-57]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
S
E
-
N
P
K
-----
I
-----
G
P
I
S
E
-----
V
----
A
--
S
G
V
K
T
T
A
N
-
G
-----
I
--
E
R
I
-----
P
V
I
-
G
E
I
A
K
--
P
V
--
T
-
T
A
V
K
W
F
A
D
V
VG
T
V
A
A
I
F
G
W
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
42
SP3
43.09
12%
-30
- C12 -
-
1HV9
1
GLMU_ECOLI
A:
[252-452]
------------------------------------------------------------------------------------------------------------------------VMLRDPARFDLR
G
T
L
T
H
G
R
D
V
E
I
D
T
N
V
I
I
E
G
N
V
T
L
G
H
R
V
K
I
G
T
G
C
V
I
K
N
S
V
I
G
D
D
C
E
I
S
P
Y
T
V
V
E
D
A
N
L
A
A
A
C
T
I
G
PF
A
R
L
R
PG
A
E
L
L
E
G
A
H
V
G
N
F
V
E
M
K
K
A
R
L
G
KGSKAGHL
T
Y
L
G
D
A
E
I
G
D
N
V
N
I
G
----
A
G
T
-
I
T
C
-
N
Y
D
-----
G
A
N
K
F
K
T
I
I
G
D
-----
D
----
V
--
F
-
V
G
S
D
T
Q
-
L
-----
V
--
A
P
------
V
T
V
-
G
K
G
A
T
I
A
A
G
--
T
-
T
V
T
--------
R
N
V
G
E
N
A
L
A
I
SRVP
Q
T
Q
K
E
GWRRP---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
42.94
25%
-407
- C9 -
-
1YBY
-
EFP_CLOTH
B:
[183-206]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
V
E
-
T
G
A
-----
S
-----
I
K
V
P
L
-----
F
----
V
--
N
-
K
G
D
I
I
R
-
I
-----
D
--
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
42.67
31%
-80
- C11 -
-
5GJ9
1
ACCO2_ARATH
B:
[197-227]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
----
L
-
Q
-
L
L
K
-
D
G
D
-----
W
-----
I
D
V
P
P
LNHSI
V
----
I
--
N
-
L
G
D
Q
L
E
-
V
-----
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
41.67
25%
-357
- C9 -
-
1YBY
-
EFP_CLOTH
A:
[183-206]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
V
E
-
T
G
A
-----
S
-----
I
K
V
P
L
-----
F
----
V
--
N
-
K
G
D
I
I
R
-
I
-----
D
--
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
41.63
31%
-75
- C11 -
-
5GJA
1
ACCO2_ARATH
A:
[197-227]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
----
L
-
Q
-
L
L
K
-
D
G
D
-----
W
-----
I
D
V
P
P
LNH
S
I
V
----
I
--
N
-
L
G
D
Q
L
E
-
V
-----
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
SP3
40.15
14%
75
* C12 *
-
1QRE
-
CAH_METTE
A:
[38-247]
---------------------------------------------------------------------------------------------------------------------------------------T
V
D
E
F
S
N
I
R
E
N
P
VTPWNP
E
P
S
A
P
V
I
D
PT
A
Y
I
D
PQ
A
S
V
I
G
E
V
T
I
G
A
N
V
M
V
S
P
M
A
S
I
R
SDEG
M
P
I
F
V
G
D
R
S
N
V
Q
D
G
V
V
L
H
A
L
ETINEEGEPIEDN
I
V
E
V
DGKEYA
V
Y
I
G
N
N
V
S
L
A
----
H
-
Q
S
Q
V
H
-
G
P
------------
A
A
V
G
D
-----
D
----
T
--
F
-
I
G
M
Q
A
F
-
V
-----
F
----
K
-----
S
K
V
-
G
N
N
C
V
L-
E
P
--
R
-
S
A
A
--------
I
G
V
T
I
P
D
G
R
Y
I
P
AGMVVTS
Q
A
E
A
D
K
L
P
E
V
T
DDYAYSH
T
N
E
A
V
V
Y
V
N
V
H
L
A
E
G
Y
K
E
T
S------------------------------------------------------------------------------------------------------------------------------------------
39
SP3
40.13
16%
10
- C12 -
-
1LXA
-
?
?:
[1-262]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MIDKS
A
F
V
H
PT
A
I
V
E
E
G
A
S
I
G
----
A
-
N
A
H
I
G
-
P
F
------------
C
I
V
G
P
-----
H
----
V
--
E
-
I
G
E
G
T
V
-
L
KSH
V
V
V
--
N
G
H
-----
T
K
I
-
G
R
D
N
E
--
I
Y
Q
F
A
-
S
I
G
--------
E
V
N
Q
D
L
K
Y
AGEP
T
R
V
E
I
G
D
R
N
R
I
R
E
S
V
T
I
H
R
G
T
VQGGG
L
T
K
V
G
S
D
N
L
L
M
I
N
A
H
I
A
HD
C
T
V
G
N
R
C
I
L
A
NN
A
T
L
A
G
H
V
S
V
D
D
F
A
I
I
G
G
M
T
A
V
H
Q
F
C
I
I
G
A
H
V
M
V
G
G
C
S
G
V
A
Q
D
V
P
P
Y
V
I
A
Q
G
NHATPFGVN
I
E
G
L
K
R
R
GFS
R
E
A
I
T
A
I
R
N
A
Y
K
L
I
YRSGKTLDEV
K
P
E
I
A
E
L
A
E
T
Y
PEVK
A
F
T
D
F
F
A
R
STRGLIR--
2
PsiBlast_PDB
38.44
31%
44
- C8 -
-
2RQE
-
BGBP_BOMMO
A:
[54-94]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
-
N
G
R
-----
W
-----
I
F
R
D
R
-----
N
----
A
A
L
K
-
I
G
D
K
I
Y
-
F
-----
W
--
T
F
V
-----
I
K
D
-
G
L
G
Y
R
--
Q
D
--
N
-
G
E
W
--------
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
37.96
31%
24
- C8 -
-
3AQX
-
BGBP_BOMMO
A:
[56-96]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
-
N
G
R
-----
W
-----
I
F
R
D
R
-----
N
----
A
AL
K
-
I
G
D
K
I
Y
-
F
-----
W
--
T
F
V
-----
I
K
D
-
G
L
G
Y
R
--
Q
D
--
N
-
G
E
W
--------
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
37.88
26%
-443
- C7 -
-
3VBM
1
?
E:
[30-48]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
G
-----
F
-----
L
S
V
G
K
-----
N
----
V
--
L
-
I
S
K
K
A
S
-
I
-----
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------