@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : MGG_16939T0: (2018-03-19 )
RRMCILTLAEKTQNPEKPNFLEDTYQEVEAPAAAMLSYGGHEIHFELDKNCWPRLRHGSAVPPGYSAHIYSEGSDKYPPTSAVIEGTHVQKLPGFNPKGNVRFYEKLIGLS
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------------.......---..10..-------....---..20--..------....--.---..30-......-------..-------40......-.-..50----.--.....---...-----60--......----..70...---...--..80...-....----.90-----...---------...--..100...---...-..----110----------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------R
R
M
C
I
L
T
---
L
A
E
KTQ-------NPEK---PN
F
---
L
E
------
D
T
Y
Q
--
E
---
V
EA
P
-
A
A
A
M
L
S-------YG-------G-
H
E
I
H
F
E-L-DKN-----C--
W
P
RLR---HGS-----AV--PPGY
S
A
----
H
I
YSEGS---DKY--PPTS
A
V
I
-EGT
H
----
V
QK-----LPG---------FNP--KG
N
-
V
R
F
Y
---
E
K
L
-IG----LS-----------------------------------------------------------------------------------------------------------------------------------------------
41
Fugue
59.10
26%
1
- C4 -
-
4D10
-
CSN3_HUMAN
C:
[3-403]
S
A
L
E
Q
F
V
N
S
V
R
Q
L
SAQGQM
T
Q
L
C
E
L
I
N
K
SGELLAKN
L
S
H
L
D
T
V
LGALDVQE
H
S
L
G
V
L
A
V
L
F
V
KFSMPSVPDF
E
T
L
F
S
Q
V
Q
L
F
I
S
TCNGEHIRYA
T
D
T
F
A
G
L
C
H
Q
L
T
N
A
L
V
E
R
KQP
L
R
G
I
G
I
L
K
Q
A
I
D
K
M
Q
MNTNQLT
S
I
H
A
D
L
C
Q
L
C
---
L
L
A
K
C
F
-------
K
P
A
L
---
P
Y
L
D
VD
M
M
------
D
I
C
K
--
E
NGA
Y
D
A
K
-
H
F
L
C
Y
Y
-------
Y
Y
-------
G
-
G
M
I
Y
T
G
-
L
-
K
N
F
-----
E
--
R
A
L
Y
F
---
Y
E
Q
-----
A
I
T
T
P
A
M
A
V
S
----
H
I
M
L
E
S
Y
---
K
K
Y
--
I
L
V
S
L
I
L
-
L
G
K
-----
V
Q
Q
-----
L
P
K
---------
Y
T
S
--
Q
I
V
-
G
R
F
I
---
K
P
L
-
S
N
----
A
Y
H
E
L
A
Q
V
Y
S
T
NN
P
S
E
L
R
N
L
V
N
K
H
S
E
T
F
T
R
D
NN
M
G
L
V
K
Q
C
L
S
S
L
Y
K
K
N
I
Q
R
L
T
K
T
FLTLS
L
Q
D
M
A
S
R
VQLSG
P
Q
E
A
E
K
Y
V
L
H
M
I
E
D
GEIF
A
S
I
N
QKDG
M
V
S
F
H
DNPEKYNNP
A
M
L
H
N
I
D
Q
E
M
L
K
C
I
E
L
D
E
R
L
K
A
M
D
Q
E
I
T
V
NPQF
4
PsiBlast_PDB
56.75
25%
14
- C3 -
-
4PEF
1
?
A:
[5-91]
---------------------------------------------------------------------------------------------------------------------------------------------------------
Q
I
Q
-------
H
I
A
I
---
V
G
C
---
V
H
------
G
K
Y
R
--
E
---
M
Y
R
Q
-
L
S
E
Y
E
K
-------
S
T
-------
G
-
K
E
I
S
F
V
-
I
-
C
T
G
-----
D
--
M
Q
T
L
R
---
Y
E
A
DLVYL
K
V
--
P
P
K
Y
K
Q
MGD
F
H
L
Y
Y
E
G
K
---
E
K
A
--
P
Y
L
T
L
F
I
-
G
G
N
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
56.46
25%
23
- C3 -
-
4PEG
2
?
A:
[5-91]
---------------------------------------------------------------------------------------------------------------------------------------------------------
Q
I
Q
-------
H
I
A
I
---
V
G
C
---
V
H
------
G
K
Y
R
--
E
---
M
Y
R
Q
-
L
S
E
Y
E
K
-------
S
T
-------
G
-
K
E
I
S
F
V
-
I
-
C
T
G
-----
D
--
M
Q
T
L
R
---
Y
E
A
DLVYL
K
V
--
P
P
K
Y
K
Q
MGD
F
H
L
Y
Y
E
G
K
---
E
K
A
--
P
Y
L
T
L
F
I
-
G
G
N
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
56.07
25%
18
- C3 -
-
5K73
-
?
A:
[7-93]
---------------------------------------------------------------------------------------------------------------------------------------------------------
Q
I
Q
-------
H
I
A
I
---
V
G
C
---
V
H
------
G
K
Y
R
--
E
---
M
Y
R
Q
-
L
S
E
Y
E
K
-------
S
T
-------
G
-
K
E
I
S
F
V
-
I
-
C
T
G
-----
D
--
M
Q
T
L
R
---
Y
E
A
DLVYL
K
V
--
P
P
K
Y
K
Q
MGD
F
H
L
Y
Y
E
G
K
---
E
K
A
--
P
Y
L
T
L
F
I
-
G
G
N
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
SP3
55.97
18%
-30
* C4 *
-
1HFO
-
MIFH_TRISP
A:
[1-113]
-----------------------------------------------------------------------------------------------------------------------------------------------
P
I
F
T
---
L
N
T
N
I
K
-------
A
T
D
V
---
P
S
------------
D
F
L
S
--
S
---
T
S
A
L
-
V
G
N
I
L
S
-------
K
P
-------
G
-
S
Y
V
A
V
H
-
I
-
N
T
D
-----
Q
----
Q
L
S
---
F
G
G
-----
S
T
--
N
P
A
A
F
G
----
T
L
M
S
I
G
G
IEP
S
R
N
--
R
D
H
S
A
K
L
-
F
D
H
L
----
N
T
K
-----
L
-
G
---------
I
P
K
N-
R
M
Y
-
I
H
F
V
N
L
N
G
D
D
-
V
G
----
W
N
GTTF-------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
55.86
25%
20
- C3 -
-
5K71
-
?
A:
[7-93]
---------------------------------------------------------------------------------------------------------------------------------------------------------
Q
I
Q
-------
H
I
A
I
---
V
G
C
---
V
H
------
G
K
Y
R
--
E
---
M
Y
R
Q
-
L
S
E
Y
E
K
-------
S
T
-------
G
-
K
E
I
S
F
V
-
I
-
C
T
G
-----
D
--
M
Q
T
L
R
---
Y
E
A
DLVYL
K
V
--
P
P
K
Y
K
Q
MGD
F
H
L
Y
Y
E
G
K
---
E
K
A
--
P
Y
L
T
L
F
I
-
G
G
N
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
Fugue
55.12
19%
28
- C7 -
-
4Q7O
2
?
A:
[4-136]
-------------------------------------------------------------------------------------------------------------------------------------------M
K
N
N
I
F
L
N
---
L
N
K
K
S
I
-------
N
N
N
H
F
V
I
S
I
F
---
F
E
------
T
I
Y
Q
F-
E
---
T
K
D
T
-
L
L
E
C
F
K
N
I
T
T
TG
H
F
G
-------
V
-
I
G
A
Q
Y
E
K
I
-
D
A
T
-----
R
--
W
I
G
D
Y
EEV
N
G
F
-----
E
Y
--
I
D
K
A
P
S
----
I
Y
F
S
V
G
D
---
D
-
F
--
N
P
E
E
L
I
I
-
P
I
N
L
----
A
Y
H
Y
F
N
I
A
I
S
D
---------
F
L
I
--
A
-
H
-
P
E
Y
Q
---
K
K
C
-
K
E
----
I
Q
K
T
Y--------------------------------------------------------------------------------------------------------------------------------------------
51
SP3
48.78
19%
94
- C6 -
-
2PIA
1
?
?:
[1-103]
---------------------------------------------------------------------------------------------------------------------------------------------------------
T
T
---------
P
Q
E
---
D
G
F
---
L
R
------
L
K
I
A
--
S
---
K
E
K
------
I
A
-------
R
D
-------
I
-
W
S
F
E
L
T
-
D
P
Q
G
A
-----
P
--
L
P
P
F
E
---
A
G
A
N
L
T
V
-
A
V
--
P
N
G
-
S
R
----
R
T
Y
S
L
C
N
---
D
S
Q
--
E
R
N
R
Y
V
I
-
A
-------
V
K
R
-----
D
S
N
----------
G
R
--
G
G
S
-
I
S
F
I
---
D
D
T
S
E
G
D
A
V
E
V
S
LPRN-------------------------------------------------------------------------------------------------------------------------------------------
45
SP3
47.78
16%
65
- C7 -
-
1ERV
-
?
?:
[1-105]
----------------------------------------------------------------------------------------------------------------------------------------------
M
-
V
K
Q
---
I
E
S
K
T
A
F
Q
E
A
L
D
A
A
G
D
K
---
L
V
V
---
V
D
F
S
A
TWC
G
P
C
K
--
M
---
I
-
K
P
-
F
F
H
S
L
S
E
K
-----
Y
S
-------
N
V
I
F
L
E
V
D
-
V
-
D
D
C
---------
Q
D
V
A
---
S
E
C
-----
E
V
-----------------------
K
S
--
M
P
T
F
Q
F
F
K
K
G
Q
K
----
V
G
E
-----
F
S
G
---------
A
N
K
--
E
K
L
-
E
A
T
I
---
N
E
L
-
V
------------------------------------------------------------------------------------------------------------------------------------------------------
46
SP3
43.75
14%
73
- C4 -
-
1D0N
-
GELS_HORSE
A:
[629-755]
--------------------------------------------------------------------------------------------------------------------------------------------------
R
---
L
K
D
K
K
M
-------
D
A
H
P
---
P
R
L
---
F
A
C
S
NKI-
G
R
F
V
I
E
E
---
V
P
G
E
F
M
Q
E
D
L
A
-------
T
D
D
V
M
L
LDT
W
-
D
Q
V
F
V
W
-
V
-
G
K
D
-----
S
--
Q
D
E
E
K
---
T
E
A
L
----
T
S
--
A
K
R
Y
-
I
----
D
T
D
P
A
H
R
---
D
R
R
--
T
P
I
T
V
V
K
-
Q
G
F
E
PPSF
V
G
W
-----
F
L
G
---------
W
D
D
SY
W
S
V
-
D
P
L
D
---
R
A
L
-
A
E
----
L
A
A----------------------------------------------------------------------------------------------------------------------------------------------
52
SP3
43.58
10%
10
- C7 -
-
1V98
-
?
A:
[49-140]
-------------------------------------------------------------------------------------------------------------------------------------------G
A
P
L
T
L
V
D
---
F
F
A
P
W
C
-------
G
P
C
R
-----
L
---
V
S
------
P
I
L
E
--
E
---
L
A
R
D
--------------
H
A
-------
G
-
R
L
K
V
V
K
-
V
-
N
V
D
-----
E
--
H
P
G
L
A
---
A
R
Y
-----
G
V
-----------------------
R
S
--
V
P
T
L
V
L
F
R
R
G
A
P
----
V
A
T
-----
W
V
G
---------
A
S
P
--
R
R
V
L
E
E
R
L
---
R
P
Y
-
L
E
----
G
R
-----------------------------------------------------------------------------------------------------------------------------------------------
43
SP3
43.34
14%
16
* C7 *
-
2TRX
4
THIO_ECOLI
A:
[1-108]
-------------------------------------------------------------------------------------------------------------------------------------------S
D
K
I
I
H
L
T
DDS
F
D
T
D
V
L
-------
K
A
D
G
---
A
I
L
---
V
D
F
W
A
EWC
G
P
C
K
--
M
---
I
-
A
P
-
I
L
D
E
I
A
D
E
-----
Y
Q
-------
G
-
K
L
T
V
A
K
-
L
-
N
I
D
-----
Q
--
N
P
G
T
A
---
P
K
Y
-----
G
I
-----------------------
R
G
--
I
P
T
L
L
L
F
K
N
G
E
V
----
A
A
T
-----
K
V
G
---------
A
L
S
--
K
G
Q
L
K
E
F
L
---
D
A
N
-------
L
A
-----------------------------------------------------------------------------------------------------------------------------------------------
47
SP3
43.15
18%
96
- C6 -
-
1IFR
1
A:
[1-113]
-------------------------------------------------------------------------------------------------------------------------------------G
S
H
R
T
S
G
R
----
V
A
---
V
E
E
V
---------
D
E
E
G
----
K
F
---
V
-------------
R
---
L
R
N
K
-
S
N
E
D
Q
S
-------
M
G
-------
N
-
W
Q
I
K
R
Q
-
N
-
G
D
D
P
L
L
T
Y
R
--
F
P
P
------
K
F
-----
T
L
--
K
A
G
Q
V
V
----
T
I
W
A
A
G
A
---
G
A
T
HS
P
P
T
D
L
V
W
-
K
A
-------
Q
N
-----
T
W
G
CGN
S
L
R
T
A
L
I
N
S
--
T
G
E
-
E
V
A
M
---
R
K
L
-
V
------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
42.89
32%
55
- C3 -
-
4PEI
1
?
A:
[36-93]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
-
K
E
I
S
F
V
-
I
-
C
T
G
-----
D
--
M
Q
T
L
R
---
Y
E
A
DLVYL
K
V
--
P
P
K
Y
K
Q
MGD
F
H
L
Y
Y
E
G
K
---
E
K
A
--
P
Y
L
T
L
F
I
-
G
G
N
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
42.85
32%
63
- C3 -
-
4PEH
-
?
A:
[36-93]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
-
K
E
I
S
F
V
-
I
-
C
T
G
-----
D
--
M
Q
T
L
R
---
Y
E
A
DLVYL
K
V
--
P
P
K
Y
K
Q
MGD
F
H
L
Y
Y
E
G
K
---
E
K
A
--
P
Y
L
T
L
F
I
-
G
G
N
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
41.17
42%
-20
* C5 *
-
5AA7
-
?
A:
[31-68]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
--
S
---
V
E
A
P
-
K
G
A
T
T
C
-------
S
G
-------
G
-
N
E
A
F
A
I
-
L
-
D
D
N
-----
S
KP
W
P
T
T
E
---
I
A
S
-----
T
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
40.34
42%
-30
- C5 -
-
5VG0
-
?
A:
[31-68]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
--
S
---
V
E
A
P
-
K
G
A
T
T
C
-------
S
G
-------
G
-
N
E
A
F
A
I
-
L
-
D
D
N
-----
S
KP
W
P
T
T
E
---
I
A
S
-----
T
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
40.31
25%
-59
- C3 -
-
3EDY
1
TPP1_HUMAN
A:
[84-141]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
A
-------
A
G
-------
A
-
Q
K
C
H
S
V
-
I
-
T
Q
D
F
L
T
--
C
--
W
L
S
I
R
---
Q
A
E
-----
L
L
--
L
P
G
A
E
F
----
H
H
Y
V
G
G
---------
P
T
E
T
H
V
V
-
R
S
P
H
----
P
Y
Q
-----
L
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
40.27
42%
-24
- C5 -
-
5VG1
-
?
A:
[31-68]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
--
S
---
V
E
A
P
-
K
G
A
T
T
C
-------
S
G
-------
G
-
N
E
A
F
A
I
-
L
-
D
D
N
-----
S
KP
W
P
T
T
E
---
I
A
S
-----
T
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
39.89
10%
-149
- C3 -
-
4RT5
-
?
A:
[23-42]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
-----
I
S
V
---------
T
D
V
--
A
Q
S
-
V
E
W
Y
---
T
S
H
-
F
Q
----
C
------------------------------------------------------------------------------------------------------------------------------------------------