@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : MGG_18060T0: (2018-03-20 )
GCPYSVRRYDKEVKWDIVEAGKSHIRVIDGYPATISADQDCKLKIKGLARLKYTIAPGDSRPDRCKGNSIGTS
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------..-.-...------.-..10-----....-..---..------20----.....---.----...-------------------30-------......-..---40.--------......-..-------50..-..--------.-------------.---..-------.------60..---------.-----..-.--..70..--------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC-P-Y
S
V
------
R
-
R
YDK-----E
V
K
W
-
D
I
---
V
E------A-----GKS
H
I
---
R
----
V
ID-------------------GY-------PATISA-DQ---D-
C
--------
K
L
K
I
K
G
-
L
A
-------
R
-
L
K
-
Y
T
--------I-------------A---PG-------D------SRPD---------R-----CK-G--NSIGTS--------------------------------------------------------
27
SP3
58.61
19%
111
- C4 -
-
1QF9
2
KCY_DICDI
A:
[1-194]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEKS
K
P
N
V
V
F
V
L
G
G
PGSG
K
G
T
Q
C
A
N
I
V
R
D
FG
W
V
H
L
S
A
G
D
L
L
R
Q
E
Q
Q
S
GSKD
G
E
M
I
A
T
M
I
K
N
G
E
-
I
-
V
P
S
------
I
-
V
T
V
K
-----
L
L
K
--
N
A
---
I
D
------
A
-----
N
Q
G
K
N
---
F
----
L
V
D
-------------------
G
F
-------
P
R
N
E
E
N
-
N
N
---
S
-
W
--------
E
E
N
M
K
D
-
F
V
-------
D
-
T
K
-
F
V
--------
L
-------------
F
F
D
C
P
E
-------
E
------
V
M
T
Q
---------
R
-----
L
L
-
K
R
G
E
S
S
G
R
S
DDN
I
E
S
I
K
K
R
F
N
T
F
N
V
Q
T
K
L
V
I
D
H
Y
N
K
F
DK
V
K
I
I
P
ANRD
V
N
E
V
Y
N
D
V
E
N
L
F
K
S
M
GF
12
Fugue
58.58
21%
-70
- C4 -
-
4GI3
-
SPI_SCHGR
C:
[21-77]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
-
P
--------------------------
S
I
---
C
P
------
L
-----
I
Y
A
P
V
---
C
----
V
E
D
-------------------
S
N
-------
Q
D
F
Y
L
F
-
V
N
---
E
-
C
--------
E
V
R
K
C
G
-
C
E
-------
A
G
F
V
-
Y
T
--------
F
-------------
V
---
P
-----------------
R
E
---------
M
-----
C
K
-
A
--
T
T
S
L
C
P
--------------------------------------------------------
26
SP3
56.34
26%
58
- C2 -
-
1PGS
-
?
?:
[141-314]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------K
Y
S
A
V
V
P
VIQYNKSSID
G
V
-
P
-
Y
G
-------
K
-
A
H
T
L
-----
G
L
K
K
-
N
I
Q
L
P
T
N
------
T
-----
E
K
A
Y
L
---
R
----
T
T
I
S
G
W
----------------
G
H
-------
A
K
P
Y
D
A
G
S
R
---
G
-
C
AEW
C
F
R
T
H
T
I
A
I
N
N
-
A
N
-------
T
-
F
Q
-
H
Q
--------
L
GALGCSANPINNQ
S
---
P
G
-------
N
------
W
T
P
D
---------
R
AGW--
C
P
-
G
--
M
A
V
P
T
R
I
D
V
L
N
NSLTG
S
T
F
S
Y
E
Y
K
F
Q
S
W
T
N
NGT
N
G
D
A
F
Y
A
I
S
S
F
V
I
A
K
S
NTPIS
A
P
V
V
T
N--
23
SP3
55.93
20%
35
- C4 -
-
2BVW
8
GUX6_HUMIN
A:
[2-362]
NGNPFEG
V
Q
L
W
A
N
N
Y
Y
R
S
E
V
H
T
LAIPQITD
P
A
L
R
A
A
A
S
A
V
A
E
V
P
S
F
Q
W
LDR
N
V
T
V
D
T
L
L
V
Q
T
L
S
E
I
R
E
A
N
Q
A
GANP
Q
Y
A
A
Q
I
V
V
Y
DLPDRDCAAAASNGEWAIANN
G
V
N
N
Y
K
A
Y
I
N
R
I
R
E
I
L
I
S
F
SD
V
R
T
I
L
V
I
EPD
S
L
A
N
M
V
TNMNV
P
K
C
S
G
A
A
S
T
Y
R
E
L
T
I
Y
A
L
K
Q
L
DLPH
V
A
M
Y
M
DAGHAGWLGWPAN
I
Q
P
A
A
E
L
F
A
K
I
Y
E
D
A
GKPRAVR
G
L
A
T
NVA
N
Y
N
A
WSVSSPPPYTS
P
N
-
P
N
Y
D
E
------
K
-
H
Y
I
E
-----
A
F
R
P
-
L
L
---
E
A
------
R
-----
G
F
P
A
Q
---
F
----
I
V
D
QGRSG--------------
K
Q
-------
P
T
G
Q
K
E
-
W
G
---
H
W
C
--------
N
A
I
G
T
G
-
F
G
-------
M
--
R
-
P
T
--------
A
-------------
N
---
T
G
-------
H
------
Q
Y
V
D
AFVWV----
K
-----
P
G
-
G
--
E
C
D
G
T
S
DTTAARYDYHCGLEDALKPAPEAGQWF
N
E
Y
F
I
Q
L
L
R
N
ANPPF--------------
13
Fugue
54.68
19%
0
- C4 -
-
5CCA
-
MAZF3_MYCTU
A:
[22-119]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
R
P
I
H
I
A
A
R
-
P
-
V
L
I
LTREVV
R
-
P
H
L
T
-----
N
V
T
V
-
A
P
---
I
T
TTVRGL
A
-----
T
E
V
P
V
---
D
----
A
V
N
-------------------
G
L
NQ-----
P
S
V
V
S
C
-
D
N
---
T
-
Q
--------
T
I
P
V
C
D
-
L
G
-------
R
Q
I
G
-
Y
L
--------
L
-------------
A
---
S
Q
-------
E
------
P
A
L
A
---------
E
-----
A
I
-
G
--
N
A
F
D
L
---------------------------------------------------------
24
SP3
52.04
19%
57
- C3 -
-
1T8T
1
HS3SA_HUMAN
A:
[1-271]
-------------------------------------------------------------------------------------------------PN
S
G
T
L
A
L
L
L
D
E
G
S
K
Q
L
P
QAIIIGVKKGG
T
R
A
L
L
E
F
L
R
V
HPD
V
R
A
V
GAEPHFFDRSYDKG
L
A
W
Y
R
D
L
MPRTLDG
Q
I
T
M
E
K
T
PSYFVTRE
A
P
A
R
I
S
A
M
SKD
T
K
L
I
V
V
V
R
D
P
V
T
R
A
I
S
D
Y
T
Q
T
L
S
K
RPDIPT
F
E
S
L
T
F
KN
G
L
I
D
-
T
S
W
------
S
-
A
I
Q
I
-----
G
I
Y
A
-
K
H
---
L
E
------
H
W
L
R
H
F
P
I
R
Q
M
---
L
----
F
V
S
G
E
R
L
I
S
D
P
A
G
E
L
G
R
V
Q
D
F
L
G
L
-------
K
R
I
I
T
D
-
K
H
F
Y
F
N
------------
K
T
K
G
-
F
P
-------
C
-
L
K
-------------------------
K
---
A
E
-------
G
------
S
S
R
P
---------
H
-----
C
L
-
G
--
K
T
K
G
R
T
HPEID
R
E
V
V
R
R
L
R
E
F
Y
R
P
F
N
L
K
F
Y
Q
M
T
GHDFGWDG---------------------
9
HHSearch
50.42
38%
-287
- C5 -
-
2X5T
-
Y131_SIRV1
A:
[24-40]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
--------
I
L
K
I
K
G
-
I
K
-------
R
-
I
V
-
V
Q
--------
L
-------------
N
----------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
50.41
21%
13
- C4 -
-
2F9W
2
COAX_PSEAE
A:
[176-226]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
------
R
-
T
H
T
R
-----
R
I
R
Y
-
D
D
---
A
E
------
A
-----
R
R
A
L
A
---
S
----
L
Q
P
-------------------
G
Q
-------
A
T
A
E
A
V
-
E
R
---
G
-
C
--------
L
L
M
L
R
G
-
F
V
-------
R
-
E
Q
-
Y
A
--------
M
-------------
A
----------------------------------------------------------------------------------------------------------
25
SP3
50.29
20%
49
- C4 -
-
1L1M
-
LACI_ECOLI
A:
[1-62]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
-----
P
V
T
L
Y
D
V
---
A
E
Y
-----
A
-----
G
V
S
Y
Q
T
V
S
R
----
V
V
N
-------------------
Q
A
-------
S
---
H
V
-
S
A
---
K
-
T
--------
R
E
K
V
E
A
-
A
M
-------
A
E
L
N
-
Y
--------------------------------------------
I
P
N
---------
R
C
A
Q
Q
L
A
G
-
K
--
Q
S
L
-----------------------------------------------------------
30
SP3
49.21
16%
-8
* C6 *
-
1T0P
2
ICAM3_HUMAN
B:
[1-86]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
-
E
-
F
L
L
------
R
-
V
E
P
Q
-----
N
P
----
V
---
L
S
------
A
-----
G
G
S
-
L
---
F
----
V
N
------------------------------
C
S
T
D
C
-
P
S
---
S
-
E
--------
K
I
A
L
E
T
S
L
S
-------
K
-
E
L
-
V
A
--------
S
-------------
G
---
M
G
W
A
A
F
N
L
S
N
------
V
T
G
N
S
R
I
L
C
S
V
--
Y
-----
C
N
-
G
--
S
Q
I
T
G
S
S
N
I
T
V
Y
G-------------------------------------------------
11
HHSearch
46.52
31%
-233
* C5 *
-
2X5H
-
Y131_SIRV1
B:
[25-40]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
--------
I
M
K
I
K
G
-
I
K
-------
R
-
I
V
-
V
Q
--------
L
-------------
N
----------------------------------------------------------------------------------------------------------
28
SP3
46.50
17%
22
- C6 -
-
1TIU
-
?
?:
[1-89]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LIEVE
K
P
-
L
-
Y
G
V
------
E
V
F
V
G
E
-----
T
A
H
F
-
E
I
E
--
L
S
------
E
-----
P
D
V
H
G
---
Q
W
---
K
L
K
-------------------
G
Q
-------
P
--
L
T
A
-
S
P
---
D
-
C
--------
E
I
I
E
D
G
K
K
H
-------
I
-
L
I
L
H
N
--------
C
-------------
Q
---
L
G
-------
M
------
T
G
E
V
---------
S
-----
F
Q
A
A
--
N
A
K
S
A
A
N
L
K
V
K
E
L-------------------------------------------------
29
SP3
45.15
20%
43
- C4 -
-
1II2
-
PCKA_TRYCR
A:
[1-199]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTIHRNLL
S
P
E
L
V
Q
W
A
L
K
IEKD
S
R
L
T
ARG
A
L
A
V
M
SYAKTGRSPLDKRIVDTDDVRENVDWGKV
N
M
-
K
-
L
S
E
------
E
-
S
F
A
R
------
V
R
K
-
I
A
---
K
E
------
F
L
D
---
T
R
E
H
L
---
F
----
V
V
D
-------------------
C
F
----------
A
G
H
-
D
E
---
R
-
Y
--------
R
L
K
V
R
V
-
F
T
-------
T
-
R
P
-
Y
H
A
L
F
M
R
D
M
L
I
-------------
V
---
P
T
-------
P
E
E
L
A
T
F
G
E
P
D
Y
V
I
YNAGEC
K
-----
A
D
-
P
--
S
I
P
G
L
T
ST
T
C
V
A
L
N
FKTR
E
Q
V
I
L
GTEY
A
G
E
M
K
K
G
I
L
T
V
M
F
E
L
M
P
Q
M
N---------------
7
HHSearch
43.37
6%
-288
* C7 *
-
5A9H
-
A:
[1-22]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
---
A
A
------
S
-----
Q
E
I
F
L
---
Q
----
V
L
N
-------------------
L
A
-------
D
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
42.41
35%
-34
- C5 -
-
4ECD
-
AROC_BIFLS
A:
[7-152]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
---
Q
T
------
A
-----
G
E
S
H
G
---
E
A
L
V
A
M
I
E
-------------------
G
L
-------
P
A
G
V
R
I
-
S
T
---
D
-
D
--------
I
-------------------------------------------------------------------------------------------------------------------------------------------------------
22
SP3
41.68
20%
118
- C4 -
-
1DYS
-
GUN6_HUMIN
A:
[3-347]
-GNPFSGRTLLVN
S
D
Y
S
S
K
L
D
Q
T
R
Q
A
F
L
S
R
GD
Q
T
N
A
A
K
V
K
Y
V
Q
EK
V
G
T
F
Y
W
ISNIFL
L
R
D
I
D
V
A
I
Q
N
A
R
A
A
K
A
R
G
E
N
P
I
V
G
L
V
LYNLPDRDCSAGESSGELKLSQN
G
L
N
R
Y
K
N
EY
V
N
P
F
A
Q
K
L
K
A
A
SD
V
Q
F
A
V
I
L
EPD
A
I
G
N
M
V
TGTS
A
F
C
R
N
A
R
G
P
Q
Q
E
A
I
G
Y
A
I
S
Q
L
QASH
I
H
L
Y
L
D
VANGGWLGWADK
L
E
P
T
A
Q
E
V
A
T
I
L
Q
K
A
GNNAKIR
G
F
S
S
NVS
N
Y
N
P
YSTSNPPPYTS
G
S
-
P
S
P
D
E
------
S
-
R
Y
A
T
-----
N
I
A
N
-
A
M
---
R
Q
------
R
-----
G
L
P
T
Q
---
F
----
I
I
D
QS
R
V
---------------
A
L
-------
S
G
A
R
S
E
-
W
G
---
Q
W
C
--------
N
V
N
P
A
G
-
F
G
-------
Q
--
P
-
F
T
--------
T
-------------
N
---
T
N
-------
N
------
P
N
V
D
A
I
V
W
V
----
K
-----
P
G
-
G
--
E
S
D
G
Q
C
GMGGAPAAGMWF
D
A
Y
A
Q
M
L
T
Q
N
AHDEIA----------------------------
3
HHSearch
41.34
35%
-25
- C5 -
-
4ECD
-
AROC_BIFLS
B:
[7-157]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
---
Q
T
------
A
-----
G
E
S
H
G
---
E
A
L
V
A
M
I
E
-------------------
G
L
-------
P
A
G
V
R
I
-
S
T
---
D
-
D
--------
I
-------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
41.26
18%
142
- C4 -
-
5MPW
-
MORF1_ARATH
A:
[1-115]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAM
T
V
L
F
EGCDYN
H
W
L
I
T
M
D
FSKEE
T
P
K
S
P
E
E
M
V
A
A
Y
E
E
T
C
-
A
-
Q
G
L
------
G
-
I
S
V
E
-----
E
A
K
Q
-
R
M
---
Y
A
------
C
-----
S
T
T
T
Y
---
Q
--------------------------
G
F
-------
Q
A
I
M
T
E
-
Q
E
---
S
-
E
--------
K
F
K
D
---
L
P
-------
G
-
V
V
-
F
I
--------
L
-------------
P
------------
D
------
S
Y
I
D
---------
P
-----
Q
N
-
K
--
E
Y
G
G
D
K
YENG
V
I
T
H
R
P----------------------------------------------
14
Fugue
40.02
15%
94
- C6 -
-
1LWR
-
A:
[1-96]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGP
S
A
-
P
-
K
L
E
------
G
-
Q
M
G
E
DGN
S
I
K
V
N
L
-
I
K
---
Q
D
------
D
-----
G
G
S
P
I
---
R
H
Y
--
L
V
K
-------------------
Y
R
A
LASEWK
P
E
I
R
L
P
-
S
G
---
S
-
D
--------
H
V
M
L
K
S
-
L
D
WN
A
E
Y
E
V
Y
-
V
V
-
A
E
--------
N
-------------
Q
---
Q
G
-------
K
------
S
K
A
A
---------
H
-----
F
V
-
F
--
R
T
S
A
Q
---------------------------------------------------------
10
HHSearch
39.97
33%
-19
- C5 -
-
1QXO
1
AROC_STRPN
B:
[4-31]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
------
A
-----
G
E
S
H
G
---
P
RLTA
I
I
E
-------------------
G
I
-------
P
A
G
L
P
L
-
T
A
---
E
-
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------