@TOME V2.3
(Mar 2018)
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
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Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : M_TH16_EuGene_00124981: (2018-03-21 )
LGCTYSLYNNIGRQLVSYAPVSPGGTIDYKIGRTTHKLKFADTCEFEKSVPRLPDYWKVFGHVEGQMMPVE
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.......-..10......-...20--......--...-30..-.-----.....40---....--...-.----50...--....---.60------------.-.---......70
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LGC
T
Y
S
L
-
Y
N
N
-
I
G
R
Q
L
V
-SYAP---VSPG
G
T
--
I
D
Y
-
K
IGR-
T
-----
T
H
K
L
KFA---
D
T
C
E
--
F
E
K-S----VPRL
P
--
D
Y
W
K
---
V
F
G
------------H-V---EGQMMPVE
31
Fugue
61.21
19%
0
- C- -
-
1FJG
-
RS13_THET8
M:
[2-126]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ARIAGVEIPRNKRVDVA
L
T
Y
I
Y
G
I
-
G
K
A
-
R
A
K
E
A
L
-
E
K
T
G
---
I
N
P
A
T
R
--
V
K
---------------
D
L
T
------------
E
A
-
E
----
V
V
R
L
R
--
E
Y
V
E
---
N
T
W
------------
K
-
L
---
E
G
E
L
R
A
E
V
32
Fugue
56.74
31%
5
- C10 -
-
3VWA
-
CEX1_YEAST
A:
[5-544]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PLHMSISNFQFPYTIEETAITETALWQCFDGTRKADSLPVTVFKAKRSPENESLILNAVHKSKILKIPGLCTVLETFDSDPQSTFIVTERVVPFPWDNLGSLSQNKFGVELGISQLLATLGFLKNFVLGTLSKDSVFINIKGEWVLFGLELCSSKEGLSAFEF
A
S
R
A
R
S
Y
-
Y
N
I
-
I
G
S
Q
L
-----
P
---
C
E
D
P
N
T
--
I
D
S
M
G
L
G
L
-
L
-----
I
K
S
L
---------------M
A
----
P
S
C
L
P
--
K
D
W
I
---
V
N
V
------------
N
M
I
---
S
D
G
K
I
T
I
E
36
SP3
52.18
26%
29
- C10 -
-
1UNN
-
DPO4_ECOLI
C:
[5-115]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HHVGVERTMAEDIHHWSEC
E
A
I
I
E
R
L
-
Y
P
E
-
L
E
R
R
L
A
-
K
V
K
P
------------
D
L
-
L
I
A
R
-
Q
-----
G
V
K
L
K
F
D
---
D
F
Q
Q
TT
Q
E
H
-
V
----
W
P
R
L
N
KA
D
L
I
A
---
T
A
R
------------
K
-
T
WDE
R
R
G
G
R
G
V
R
43
SP3
51.27
22%
0
- C11 -
-
1E32
1
TERA_MOUSE
A:
[21-458]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTV
E
G
I
T
G
N
L
-
F
E
V
Y
L
K
P
Y
F
L
E
A
Y
R
P
---
I
R
K
G
D
I
--
F
L
V
-
R
G
G
M
-
R
-----
A
V
E
F
K
V
V
---
E
T
-
D
--
P
S
P
-
Y
----
C
I
V
A
P
--
D
--
T
---
V
I
-------------
H
-
C
---
E
G
E
P
I
K
R
E
42
SP3
51.25
19%
-100
- C10 -
-
1IWG
-
ACRB_ECOLI
A:
[7-1036]
DRPIFAWVIAIIIMLAGGLAILKLPVAQYPTIAPPAVTISASYPGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRTSGVGDVQLFGSQYAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQQLNASIIAQTRLTSTEEFGKILLKVNQDGSRVLLRDVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKFGWFNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTMVQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWADRPGEENKVEAITMRATRAFSQIKDAMVFAFNLPAIVELGTATGFDFELIDQAGLGHEKLTQARNQLLAEAAKHPMLTSVRPNGLEDTPQFKIDIDQEKAQA
L
G
V
S
----
I
N
D
-
I
N
T
T
L
G
-
A
A
W
G
---
G
S
Y
V
N
D
--
F
I
D
---
R
G
-
R
-----
V
K
K
V
Y
V
M
---
S
E
A
K
--
Y
R
M
-
L
-----
P
D
D
I
--
G
D
W
Y
---
V
R
A
------------
A
-----
D
G
Q
M
V
P
F
S
30
Fugue
46.38
16%
-2
- C9 -
-
3AU7
1
TIAS_ARCFU
A:
[20-402]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HMRVWVGIDTYLAVLAMERVERELGKVIGFPRLIRLNPTINGAVSFLVEVDDVGELVDVVNEVIIEPGAVFVDEELAVKLKPFADKAIKDVLQIDEALFVIGKYFIPHLRHKKGRGLIGALAAVGAELEDFTLELIAYRYPERFGTEREYDEESFFDMDYELYPQTFDNVDWCNDVVVCIPNTPCPVLYGIRGESVEALYKAMESVKTEPVDRRMIFVTNHATDMHLIGEEEV
H
R
L
E
N
Y
R
-
S
Y
R
-
L
R
G
R
V
T
-
L
E
P
Y
---
D
I
E
G
G
H
--
V
F
F
-
E
I
D
T
-
K
-----
F
G
S
V
K
C
A
AFE
P
T
K
Q
--
F
R
N
-
V
----
I
R
L
L
R
KG
D
V
V
E
---
V
Y
G
------------
S
-
M
---
K
K
D
T
I
N
L
E
29
Fugue
45.79
15%
-486
- C10 -
-
4CGB
-
EMAL2_HUMAN
A:
[5-48]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
--
V
D
D
-
R
V
S
A
-
L
-----
E
Q
R
L
Q
L
Q
---
E
D
-
E
--
L
A
V
-
L
----
K
A
A
L
A
--
D
A
L
R
---
R
L
R
------------
A
-
C
---
E
E
Q
G
A
A
L
-
26
Fugue
45.42
25%
46
* C11 *
-
4HU8
1
?
A:
[3-452]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NEITLTIGQQKDLASMVPAKFAGQELSWTSSDPETASVTD
K
G
I
V
T
A
L
K
F
S
S
-
G
G
A
N
L
F
-
L
K
A
P
---
A
T
G
E
A
I
--
I
T
V
-
T
A
G
K
-
Q
-----
S
H
S
V
K
V
I
---
T
T
V
K
--
G
K
E
-
D
----
I
E
K
L
P
--
P
L
K
D
---
H
F
K
DYFLIGNIFNNR
D
-
V
---
S
G
S
M
M
D
N
D
19
HHSearch
42.49
28%
-202
- C15 -
-
2W0C
-
CAPSD_BPPM2
J:
[5-35]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
N
L
N
-
S
I
P
N
---
V
A
A
G
N
S
CS
I
K
L
-
P
I
G
Q
-
T
-----
Y
E
V
I
D
L
R
-------------------------------------------------------------
18
HHSearch
41.53
28%
-201
* C15 *
-
2VVF
-
CAPSD_BPPM2
B:
[5-35]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
N
L
N
-
S
I
P
N
---
V
A
A
G
N
S
CS
I
K
L
-
P
I
G
Q
-
T
-----
Y
E
V
I
D
L
R
-------------------------------------------------------------
28
Fugue
38.01
16%
36
* C9 *
-
3N4S
2
CSM1_YEAST
A:
[5-116]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NSEVIKDLYEYL
C
N
V
R
V
H
K
-
S
Y
E
-
D
S
G
L
W
F
-
D
I
S
Q
---
G
T
D
Y
S
I
--
M
D
Y
-
K
L
G
F
-
V
TEVIY
A
P
V
L
K
Q
R
---
S
T
E
E
--
L
Y
S
-
L
----
Q
S
K
L
P
--
E
Y
L
F
ETL
S
F
P
------------
L
-
S
---
S
L
N
Q
F
Y
N
K
39
SP3
36.86
19%
83
- C9 -
-
1NEK
1
SDHA_ECOLI
A:
[1-588]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKLPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMAIRAGVPVQDMEMWQFHPTGIAGAGVLVTEGCRGEGGYLLNKHGERFMER
Y
A
P
N
A
---
K
D
L
-
A
G
R
D
V
V
-
A
R
S
I
MIE
I
R
E
G
R
G
--
C
D
G
-
P
W
G
P
H
A
-----
K
L
K
L
D
H
L
---
G
K
E
V
--
L
E
S
-
R
----
L
P
G
I
L
--
E
L
S
R
---
T
F
A
------------
H
-
V
---
D
P
V
K
E
P
I
P
1
HHSearch
36.37
26%
-32
* C12 *
-
4IAJ
3
?
F:
[8-47]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
--
I
T
Y
-
I
D
A
S
-
K
N----
E
R
T
V
T
F
E
---
S
Y
E
D
--
F
E
R
-
S
QQAC
L
I
G
V
A
--
D
Y
Y
P
---
V
Q
---------------------------
2
HHSearch
34.62
26%
-27
- C12 -
-
4IAJ
2
?
B:
[8-47]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
--
I
T
Y
-
I
D
A
S
-
K
N----
E
R
T
V
T
F
E
---
S
Y
E
D
--
F
E
R
-
S
QQAC
L
I
G
V
A
--
D
Y
Y
P
---
V
Q
---------------------------
22
HHSearch
34.05
40%
-102
- C13 -
-
3OWV
-
NUCE_STRPN
B:
[231-245]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
Q
K
G
L
Q
--
L
D
Y
-
R
T
G
E
-
V
-----
T
-------------------------------------------------------------------
7
HHSearch
31.77
27%
-
- C- -
-
4EO0
-
G3P_BPIKE
A:
[70-102]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
F
R
L
V
T
G
---
D
T
C
V
--
Y
N
G
-
S
----
P
G
E
K
T
--
E
S
W
S
---
I
R
A
------------
Q
-
V
---
E
G
D
I
----
10
HHSearch
31.63
37%
-151
- C7 -
-
1AQU
-
ST1E1_MOUSE
A:
[9-31]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
Y
Y
E
---
V
F
G
------------
E
-
F
---
R
G
V
L
M
D
K
-
14
HHSearch
30.16
83%
-
- C2 -
-
5FIR
-
PAXT1_CAEEL
J:
[55-62]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
G
C
E
Y
S
---------------------------------------------------------------------------------------------------------------
13
HHSearch
30.16
83%
-
- C4 -
-
5FIR
-
PAXT1_CAEEL
B:
[55-60]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
G
C
E
Y
S
---------------------------------------------------------------------------------------------------------------
25
HHSearch
29.89
33%
-43
* C13 *
-
4QH0
-
?
B:
[209-223]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
Q
A
S
Y
T
--
M
D
Y
-
A
T
G
E
-
I
-----
T
-------------------------------------------------------------------