@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : M_TH16_EuGene_00135081: (2018-03-22 )
GAKCRVDLKHGQAVVSSFEVLAGSRKTVKEEGFSWTCSTERDTCNAVNCILPKGLTAVGVQISSGKPKDRAAEESAARQAAAPKVVA
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------......-..-------.--------10........20.----------.--..--....30-..---......40----------....-.----------...50--...---.---------...-------------.60--..--.---...--.----.------------.-70....-.....80..----....
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA
K
C
R
V
-
D
L-------K--------H
G
Q
A
V
V
S
S
F
E
V
L
A----------G--SR--K
T
V
KEE-G
F
---
S
W
T
CSTER----------DTCN-
A
----------
V
N
C
IL--PKG---
L
---------
T
A
V
-------------
G
V
---
Q
I--S---SGK--P----K------------D-R-
A
A
E
E
-
S
A
A
RQAAAP----KVVA
12
Fugue
61.85
22%
-75
- C9 -
-
5V0S
-
?
A:
[1-69]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
D
L
Y
V
-
D
V
---------------------
L
D
K
V
G
A
L
A
----------
H
--
V
T
--
S
I
L
A
R
E
-
E
I
---
S
I
T
N
L
Q
I
L
----------
E
A
---------------------
R
E
G
---
L
---------
L
G
V
--------------
L
---
R
I
--
S
---
F
Q
R
--
E
----
E
------------
D
-
R
M
K
A
K
L
-
A
L
G
E
E
K
Y
Q
T
----
Y
---
28
SP3
56.83
26%
50
- C8 -
-
1EIW
-
P538_METTH
A:
[1-111]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V
T
A
E
I
R
L
-
Y
I
-------
T
--------
E
G
E
--
V
E
D
Y
R
V
F
L
-----------------
E
R
L
E
Q
S
-
G
L
---
E
W
R
P
A
T
P
E
----------
D
A
-
D
-
A
----------
V
--
I
V
--
L
A
G
---
L
WGTRRDEIL
G
A
V
-------------
D
L
---
A
R
--
K
---
S
S
K
--
P
IITV
R
------------
P
-
Y
-
G
L
E
N
V
P
P
E
L
E
A
V
S
S
----
E
V
V
G
23
SP3
55.04
21%
-96
- C8 -
-
3PRO
1
?
C:
[86-163]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
-
S
L
-------
K
--------
Q
L
Q
S
A
M
E
Q
L
D
A
G
A
----------
N
--
A
L
--
D
G
V
Q
--------
S
W
Y
V
D
P
-------------
R
S
N
-
A
----------
V
V
V
K
V
--
D
D
G
---
A
---------
T
D
A
-------------
G
V
---
D
F
VA
L
---
S
G
--------------------------
A
D
S
-
A
Q
V
R
I
E
S
S
P
----
G
K
L
-
21
SP3
54.50
18%
4
- C8 -
-
2UAG
1
MURD_ECOLI
A:
[1-99]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ADYQ
G
K
N
V
V
I
I
G
L
-----------------
G
L
T
G
L
S
C
V
D
F
F
L
---------------------
A
R
-
G
V
---
T
P
R
V
M
D
T
R
----------
M
T
P
P
-
G
----------
L
D
-
K
L
--
P
E
A
---
V
---------
E
R
H
TGSLNDEWLMAAD
L
I
---
V
A
--
S
---
P
G
I
--
A
----
L
------------
A
---
H
P
S
L
-
S
A
A
A
D
A
G
I
E
-----
I
V
G
18
Fugue
53.06
20%
-48
- C8 -
-
4LZ6
-
?
A:
[3-448]
QKQQSERLGTEAIPKLLRSLSIPAMIGMFVMALYNVVDTIFISYAVGIEGVAGVTIAFPIMMIMMSMAGALGIGGASVISRRLGERRGEEANQVFGNILTVILVLSVIGFISAFTLLGPALQLFGATSVTQGYATDYLFPILLGSIFFFFAFAANNIIRSEGNATFAMVTMIVPAVLNILLDVLFIFGLNMGVLGASIATVIAQASVTGLVLRYFLTGKSTLSLHWSDLRMKGSVIKEVCLVGLPAFVQQSSASLMMIAINSMLLRFGSDFYVGVFGLVQRIMMFVMMPMMGIMQAMQPIVGYNYGAKQ
Y
S
R
L
R
E
-
T
V
-------
M
--------
L
G
F
K
V
A
T
I
F
S
I
G
I
----------
F
--
A
L
--
L
M
L
F
P
E
-
A
L
---
L
R
V
F
T
A
D
R
----------
E
V
I
Q
-
A
GVSAMHILFC
V
T
F
L
I
--
G
A
Q
---
I
---------
V
A
G
-------------
G
L
---
Y
Q
--
S
---
L
G
K
--
P
-----------------
K
-
Q
-
A
L
I
L
-
S
L
S
R
Q
I
I
F
L
----
I
P
L
V
27
SP3
51.24
21%
-6
- C8 -
-
1BJA
-
MOTA_BPT4
A:
[1-95]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
K
V
T
Y
-
I
I
-------
K
--------
A
S
N
D
V
L
N
--
E
K
T
A
----------
T
--
I
L
--
I
T
I
A
K
K
-
D
F
ITA
A
E
V
R
E
V
H
P
----------
D
L
G
N
-
A
VVNSN-----
I
G
V
L
I
--
K
K
G
---
L
---------
V
E
K
SG-----------
D
G
---
L
I
--
I
---
T
G
E
--
A
----
Q
------------
D
I
I
-
S
N
A
A
-
T
L
Y
A
Q
E
N
A
P
----
E
L
L
K
16
Fugue
49.43
21%
33
- C8 -
-
1XPJ
1
?
A:
[1-124]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
K
L
I
V
-
D
L
-------
D
GTLTQANT
S
D
Y
R
N
V
L
P
R
L
D
V
I
----------
E
--
Q
L
--
R
E
Y
H
Q
L
-
G
F
---
E
I
V
I
S
T
A
R
NMRTYEGNVG
K
I
N
I
-
H
----------
T
L
P
I
I
--
T
E
W
---
L
---------
D
K
H
-------------
Q
V
PYD
E
I
--
L
---
V
G
K
--
P
----
W
CGHDGFYIDDRA
V
-
R
-
P
S
E
F
-
A
S
M
N
L
E
E
I
H
----
Q
L
F
E
19
Fugue
48.15
13%
22
- C8 -
-
5JIG
1
YQ77_SCHPO
A:
[1-127]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSIYTF
N
E
L
V
V
L
-
D
Y
-------
P
--------
H
K
D
R
A
L
R
Y
L
E
R
L
R
DDT-------
G
--
I
K
--
K
I
M
D
S
H
-
R
W
---
T
V
P
L
L
S
E
M
----------
D
P
T
L
-
G
----------
L
N
H
N
Q
--
G
A
H
---
I
---------
E
L
R
-------------
L
R
---
T
D
--
R
---
Y
D
G
--
F
----
R
------------
D
-
Y
-
K
T
V
K
-
S
T
L
I
H
E
L
T
H
----
N
V
H
G
14
Fugue
45.17
14%
34
- C8 -
-
2YH6
-
BAMC_ECOLI
A:
[1-111]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
D
T
A
S
L
-
L
V
-------
E
--------
N
N
T
L
W
P
Q
V
V
S
V
L
Q
AKNYTITQRD
D
--
A
G
--
Q
T
L
T
T
D
-
W
V
---
Q
W
N
R
L
D
E
D
----------
E
Q
Y
R
-
G
----------
R
Y
Q
I
S
--
V
K
P
QGY
Q
---------
Q
A
V
-------------
T
V
---
K
L
--
L
---
N
L
E
--
Q
----
A
------------
G
-
K
-
P
V
A
D
-
A
A
S
M
Q
R
Y
S
T
----
E
M
M
N
20
Fugue
43.52
15%
60
- C9 -
-
5LOP
-
?
C:
[3-64]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NFK
G
Y
Q
I
E
I
-
E
L
-------
K
--------
D
G
K
R
I
T
G
T
L
K
Q
V
S
----------
P
--
K
S
--
L
T
L
T
-------------------------------------------
D
A
V
F
--
Q
D
G
---
G
---------
V
S
P
-------------
V
F
---
K
I
--
K
---
A
D
K
--
L
----
Y
------------
D
-
L
-
K
V
L
K
-
L
P
P
--------------
29
SP3
41.81
12%
88
* C8 *
-
1IOW
1
?
?:
[1-96]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
D
K
I
-
A
V
LLGGTSA
E
--------
R
E
V
S
L
N
S
G
A
A
V
L
A
------------------
G
L
R
E
G
-
G
I
---
D
A
Y
P
V
D
P
K
----------
E
V
---
D
----------
V
T
Q
L
K
--
S
M
G
---
F
---------
Q
K
V
-------------
F
I
----
A
--
L
---
H
G
R
--
G
----
G
------------
E
-
D
-
G
T
L
Q
-
G
M
L
E
L
M
G
L
P
----
Y
T
G
S
24
SP3
41.16
16%
53
- C8 -
-
1TOL
-
A:
[125-215]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
G
A
D
I
N
N
Y
A
G
Q
I
K
----------
S
AI
E
S
--
K
F
Y
D
A
S
-
S
Y
---------
A
G
----------
K
T
C
T
-
L
----------
R
I
K
L
A
--
P
D
G
-------------
M
L
L
-------------
D
I
---
K
P
--
E
---
G
G
D
--
P
----
A
------------
L
-
C
-
Q
A
A
L
-
A
A
A
K
L
A
K
I
P
----
K
P
P
S
3
HHSearch
39.51
37%
-176
- C7 -
-
1LUP
-
MTX2_GRARO
A:
[4-22]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
W
---
M
W
T
C
D
E
E
R
----------
K
C
C
E
-
G
----------
L
V
C
R
-------------------------------------------------------------------------------------------------
22
SP3
36.52
10%
-23
* C9 *
-
1KRH
1
BENC_ACIAD
A:
[2-105]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
N
H
Q
V
-
A
L
-------
Q
--------
F
E
D
G
V
T
R
F
I
C
I
A
Q
----------
G
--
E
T
LS
D
A
A
Y
R
Q
-
Q
I
---
N
I
P
M
D
C
R
E
----------
G
E
C
G
-
T
----------
C
R
A
F
C
--
E
S
G
---
N
---------
Y
D
M
-------------
P
E
---
D
-------
N
Y
I
--
E
----
D
------------
A
-
L
-
T
P
E
E
-
A
Q
Q
G
Y
V
L
A
C
----
Q
C
R
P
1
HHSearch
36.14
37%
-188
* C10 *
-
2N9T
-
TXPR2_THRPR
A:
[4-22]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
W
---
M
W
T
C
D
S
E
R
----------
K
C
C
E
-
G
----------
M
V
C
R
-------------------------------------------------------------------------------------------------
26
SP3
35.63
13%
31
- C- -
-
1AY7
-
BARS_BACAM
B:
[1-89]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
K
A
V
I
-
N
G
-------
E
--------
Q
----
I
R
S
I
S
D
L
H
-----------------
Q
T
L
K
K
E
L
A
L
---
P
E
Y
Y
G
E
N
L
----------
D
A
L
W
D
C
----------
L
T
G
W
V
--
E
Y
P
---
L
---------
V
L
E
-------------
W
R
---
Q
F
--
E
QSK
Q
L
T
--
E
----
N
------------
G
-
A
-
E
S
V
L
-
Q
V
F
R
E
A
K
A
E
GCDI
T
I
I
L
11
Fugue
34.55
27%
-80
* C7 *
-
1LUP
-
MTX2_GRARO
A:
[1-31]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
C
Q
-
K
W
---
M
W
T
C
D
E
E
R
----------
K
C
C
E
-
G
----------
L
V
C
R
L
WC
K
R
I
---
I
---------
N
M
----------------------------------------------------------------------------
15
Fugue
33.11
24%
6
- C8 -
-
2N3G
-
DRB4_ARATH
A:
[1-72]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
D
H
V
Y
K
-
G
Q
-------
L
--------
Q
A
Y
A
L
Q
H
N
L
E
L
---------------
P
V
--
Y
A
N
E
R
E
-
G
P
---
P
---
H
A
P
R
----------
F
R
C
N
-------------------------
V
---------
T
F
C
-------------
G
Q
---
T
F
--
Q
---
S
S
E
FF
P
----
T
------------
L
-
K
-
S
A
E
H
-
A
A
A
K
I
A
V
A
S
----
L
T
--
10
HHSearch
33.11
20%
-215
- C5 -
-
3GLD
-
PILIN_STRP1
B:
[232-261]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
Y
H
F
-
T
L
-------
K
--------
D
G
E
S
I
K
V
-
T
N
L
P
V
----------
G
--
V
D
--
Y
V
V
T
E
D
-
D
Y
------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
31.64
11%
58
- C8 -
-
2LLZ
-
GHOS_ECOLI
A:
[1-100]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GHMEG
K
N
K
F
N
T
-
Y
V
-------
V
--------
S
F
D
Y
P
S
S
Y
S
S
V
F
L
----------
R
--
L
R
--
S
L
M
Y
D
M
-
N
F
---
S
---
S
I
V
A
----------
D
E
Y
G
-
I
----------
P
R
Q
L
-----
N
---
E
---------
N
S
F
-------------
A
I
---
T
T
--
S
---
L
A
A
--
S
----
E
------------
I
-
E
-
D
L
I
R
-
L
K
C
L
D
L
P
D
I
----
D
F
D
L