@TOME V2.3
(Mar 2018)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : M_TH16_EuGene_00137221: (2018-03-22 )
RRMCMLALAETTENPETPNFIHGTLQEVQAPTAASISYGGHYIHLKLDKNCLPKLVQGSSVPPGYSVHIFSKGSDKYTPTSVVIEGTEVQELPGFDPRGSVDFYERLVGLSRS
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.......---..10..-------......20.------.......30-.....------------------..--..40....----------.--------..-..50----...----....------..----60..--...------------...70...------.---..--.-----.80--.-------..-...--..--90...---------...-..100-------...---.---..-.--.----110-..
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------R
R
M
C
M
L
A
---LAETTE-------NPETP
N
F
I
H
------
G
T
L
Q
E
VQA--PT
A
A
S
------------------
I
S--YG
G
-
H
Y
I
H
----------
L
--------
K
L-DK
N
-----
C
L
P
----
K
L
VQ------GS----SVPP--G
Y
S
------------
V
H
I
F
SKGS------D---KY--T-----P
T
S
--
V
-------
V
I
-EGT--EV--QELPG---------FDP-RG
S
-
V
-------
D
F
Y
---
E
---
R
L
-V--G----LS--RS
52
SP3
77.12
20%
-80
* C4 *
-
1GD0
2
MIF_HUMAN
A:
[1-118]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
M
F
I
---
V
N
T
N
V
P
-------
R
A
S
V
P
D
---------
G
F
L
S
E
L
T
Q
--
Q
L
A
Q
A
------------------
T
G
--
K
P
P
-
Q
Y
I
A
----------
V
--------
H
V
-
V
P
D
-----
Q
------
L
M
A
F
------
G
G
----
S
S
E
P
--
C
A
L
------------
C
S
L
H
S
I
G
K
IGGAQN
R
---
S
Y
----------
S
--
K
-------
L
L
-
C
G
L
--
L
A
--
E
R
L
-
R
---------
I
S
P
D
R
V
Y
-
I
-------
N
Y
Y
---
D
MNA
A
N
-
V
--
G
----
W
N
--
N
S
42
Fugue
71.41
22%
33
- C5 -
-
5I2X
-
ACD_HUMAN
A:
[1-150]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SGRLV
L
R
P
W
I
R
E
---
L
I
L
G
S
E
-------
T
P
S
S
P
--
R
A
------
G
Q
L
L
E
V
L
Q
--
D
A
E
A
A
VAGPSHAPDTSDVGATLL
V
S
--
D
G
T
-
H
S
V
R
----------
C
--------
L
V
-
T
R
E
-----
A
L
D
TSDW
E
E
E
F
------
G
F
----
R
G
T
E
--
G
R
L
------------
L
L
L
Q
D
C
G
V
------
H
---
V
Q
--
V
AEGGA
P
A
E
--
F
-------
Y
L
-
Q
V
D
--
R
F
--
S
L
L
P
T
---------
E
Q
P
-
R
L
R
-
V
PGCNQDL
D
V
Q
---
K
---
K
L
-
Y
--
D
----
C
L
--
E
E
45
Fugue
68.89
20%
-29
- C8 -
-
1WK0
-
A:
[1-137]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
S
G
S
S
-------
G
D
E
E
T
K
A
F
E
------
A
L
L
S
N
I
V
K
--
P
V
A
S
D
------------------
I
Q
--
A
R
T
-
V
V
L
T
----------
W
--------
S
P
-
P
S
S
-----
L
I
N
----
G
E
T
D
------
E
S
----
S
V
P
E
LY
G
Y
E
------------
V
L
I
S
S
T
G
K
------
D
---
G
---
K
-----
Y
K
S
--
V
-------
Y
V
-
G
E
E
--
T
N
--
I
T
L
N
D
---------
L
K
P
-
A
M
D
-
Y
-------
H
A
K
---
V
---
Q
A
-
E
--
Y
----
N
S
--
I
K
13
PsiBlast_PDB
68.69
30%
-27
- C7 -
-
1QQO
1
HSP7C_BOVIN
A:
[167-235]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
R
I
I
N
S
--
P
T
A
A
A
------------------
I
A
--
Y
G
--------------------------
L
-
D
K
-----------------------------
A
V
G
A
--
E
R
N
------------
V
L
I
F
D
L
G
G
------
G
---
T
F
--
D
-----
V
S
I
--
L
-------
T
I
-
E
D
G
IF
E
V
--
K
S
T
A
G
---------
D
T
H
-
L
G
G
-
E
-------
D
F
D
---
N
---
R
M
-
V
-------------
7
PsiBlast_PDB
67.31
31%
-25
- C7 -
-
1QQM
1
HSP7C_BOVIN
A:
[167-235]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
R
I
I
N
E
--
P
T
A
A
A
------------------
I
A
--
Y
G
--------------------------
L
-
D
K
-----------------------------
A
V
G
A
--
E
R
N
------------
V
L
I
F
S
L
G
G
------
G
---
T
F
--
D
-----
V
S
I
--
L
-------
T
I
-
E
D
G
IF
E
V
--
K
S
T
A
G
---------
D
T
H
-
L
G
G
-
E
-------
D
F
D
---
N
---
R
M
-
V
-------------
11
PsiBlast_PDB
65.55
31%
-24
- C7 -
-
1NGE
1
HSP7C_BOVIN
A:
[170-238]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
R
I
I
N
E
--
P
T
A
A
A
------------------
I
A
--
Y
G
--------------------------
L
-
D
K
K
-----------------------------
V
G
A
--
E
R
N
------------
V
L
I
F
S
L
G
G
------
G
---
T
F
--
D
-----
V
S
I
--
L
-------
T
I
-
E
D
G
IF
E
V
--
K
S
T
A
G
---------
D
T
H
-
L
G
G
-
E
-------
D
F
D
---
N
---
R
M
-
V
-------------
10
PsiBlast_PDB
64.95
26%
-95
- C7 -
-
4ARE
1
?
A:
[123-194]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
I
P
A
---
M
I
A
I
Q
K
-------
N
P
---
N
F
K
L
------
G
T
A
V
Q
D
E
V
--
I
T
S
L
G
------------------
K
L
--
I
G
N
-
A
S
A
N
----------
A
--------
E
V
-
V
N
N
-----
C
V
P
----
V
L
K
Q
------------------------------------
F
R
E
N
L
------
N
---
Q
Y
--
A
-----
P
D
Y
--
V
----------
K
G
T
--
A
V
--
N
E
L
------------------------------------------------------
49
SP3
64.92
17%
-34
- C4 -
-
1HFO
-
MIFH_TRISP
A:
[1-113]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
I
F
T
---
L
N
T
N
I
K
-------
A
T
D
V
P
S
---------
D
F
L
S
S
T
S
A
--
L
V
G
N
I
------------------
L
S
--
K
P
G
-
S
Y
V
A
----------
V
--------
H
I
-
N
T
D
-----
Q
------
Q
L
S
F
------
G
G
----
S
T
N
P
--
A
A
F
------------
G
T
L
M
S
I
G
G
IEP---
S
---
R
N
--
R
-----
D
H
S
--
A
-------
K
L
-
F
D
H
--
L
N
--
T
K
L
-
G
---------
I
P
K
N
R
M
Y
-
I
-------
H
F
V
NLN
G
---
D
D
-
V
--
G
----
W
N
--
G
T
12
PsiBlast_PDB
63.68
30%
-23
- C7 -
-
1QQN
1
HSP7C_BOVIN
A:
[167-235]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
R
I
I
N
E
--
P
T
A
A
A
------------------
I
A
--
Y
G
--------------------------
L
-
D
K
-----------------------------
A
V
G
A
--
E
R
N
------------
V
L
I
F
D
L
G
G
------
G
---
T
F
--
S
-----
V
S
I
--
L
-------
T
I
-
E
D
G
IF
E
V
--
K
S
T
A
G
---------
D
T
H
-
L
G
G
-
E
-------
D
F
D
---
N
---
R
M
-
V
-------------
9
PsiBlast_PDB
63.56
26%
-98
- C7 -
-
2Y6I
2
?
A:
[123-197]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
I
P
A
---
M
I
A
I
Q
K
-------
N
P
---
N
F
K
L
------
G
T
A
V
Q
D
E
V
--
I
T
S
L
G
------------------
K
L
--
I
G
N
-
A
S
A
N
----------
A
--------
E
V
-
V
N
N
-----
C
V
P
----
V
L
K
Q
------------------------------------
F
R
E
N
L
------
N
---
Q
Y
--
A
-----
P
D
Y
--
V
----------
K
G
T
--
A
V
--
N
E
L
------------------------------------------------------
8
PsiBlast_PDB
63.12
26%
-99
- C7 -
-
2Y50
1
?
A:
[123-196]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
I
P
A
---
M
I
A
I
Q
K
-------
N
P
---
N
F
K
L
------
G
T
A
V
Q
D
E
V
--
I
T
S
L
G
------------------
K
L
--
I
G
N
-
A
S
A
N
----------
A
--------
E
V
-
V
N
N
-----
C
V
P
----
V
L
K
Q
------------------------------------
F
R
E
N
L
------
N
---
Q
Y
--
A
-----
P
D
Y
--
V
----------
K
G
T
--
A
V
--
N
E
L
------------------------------------------------------
41
Fugue
61.18
19%
-74
* C5 *
-
4CRI
-
RB_HUMAN (first)
A:
[27-145]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
F
V
G
L
R
V
---
V
A
K
W
S
S
-------
N
G
---
Y
F
Y
S
------
G
K
I
T
R
D
V
G
--
A
G
K
Y
K
------------------
L
L
--
F
D
D
-
G
Y
E
C
----------
D
--------
V
L
-
G
K
D
-------------
I
L
L
------
C
D
----
P
I
P
L
--
D
T
E
------------
V
T
A
L
S
E
--------
D
---
E
Y
--
F
-----
S
A
G
--
V
-------
V
K
-
G
H
R
--
K
E
SG
E
L
Y
Y
S
---------
I
E
K
-
E
G
Q
-
R
-------
K
W
Y
---
K
---
R
M
A
V
--
I
----
L
S
--
L
E
55
SP3
59.26
21%
80
* C8 *
-
2PIA
1
?
?:
[1-103]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
T
---------
P
Q
E
D
G
F
L
R
------
L
K
I
A
S
K
E
K
-------------------------
I
A
--
R
D
I
-
W
S
F
E
----------
L
--------
T
D
P
Q
G
A
-----
P
L
P
----
P
F
E
A
------
G
A
NLTV
A
V
P
N
--
G
-
S
------------
R
R
T
Y
S
L
C
N
------
D
---
S
Q
--
E
-----
R
N
R
--
Y
-------
V
I
-
A
-----
V
--
K
R
D
S
N
----------
G
R
-
G
G
S
-
I
-------
S
F
I
---
D
---
D
T
S
E
--
G
DAVE
V
S
LP
R
N
53
SP3
58.50
18%
78
- C3 -
-
1IFR
1
A:
[1-113]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSHRTSG
R
----
V
A
---
V
E
E
V
---------
D
E
E
G
-
K
F
V
-----------
R
L
R
N
--
K
S
N
E
D
------------------
Q
S
--
M
G
N
-
W
Q
I
K
----------
R
--------
Q
N
-
G
D
D
PLLTY
R
F
P
----
P
---------
K
F
----
T
L
K
A
--
G
Q
V
------------
V
T
I
W
A
A
G
A
------
G
---
A
T
HS
P
-----
P
T
D
--
L
-------
V
W
-
K
A
-------
Q
N
T
W
G
CGNSLRTAL
I
N
S
-
T
G
E
-
E
-------
V
A
M
---
R
---
K
L
-
V
-------------
39
Fugue
57.68
25%
28
* C2 *
-
4K70
1
?
A:
[2-483]
PGSMEALVRALEEADHAVATVVQSRILEFFMAAGRETPAGVRGLWARALRLACRAYVETGTCEAAVLAENLAGLALWRLRHDWDEGTAPLLELLGVVNGDDTTAALTEAGLRTSAEFGPDAMFRLVSEWCAAFDEALAGARSADDVLAAPRVVPPEQTARALVQPRFATLYDMDFVQDGLRYVAQHTNWALPLALAVRQMQNEGLKPLTRALFALTIADEFFHDRQNPTLREQFAEAA
R
A
V
D
E
A
A
---
L
V
P
V
G
E
-------
V
N
A
T
P
R
------------
T
A
V
E
V
--
R
V
S
A
A
------------------
L
A
--
H
G
D
-
A
Y
V
R
ELRPGTVARR
L
--------
R
T
-
D
Q
G
-----
V
L
A
----
L
L
D
---------------
P
G
--
A
Q
A
------------
V
H
V
A
A
A
A
D
------
L
---
D
H
--
T
-----
Q
V
D
--
A
-------
T
G
-
V
W
E
--
A
V
--
Q
A
S
A
S
---------------
P
-
L
-------
Q
V
V
---
E
---
A
L
-
V
TA
G
----
F
T
--
R
R
57
SP3
55.18
16%
73
- C8 -
-
1CQX
1
HMP_CUPNH
A:
[151-261]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------W
K
G
W
R
T
F
V
---
I
R
E
K
R
P
---------
E
S
D
V
I
T
S
------
F
I
L
E
P
A
D
G
--
G
P
V
V
N
------------------
F
E
---
P
G
-
Q
Y
T
S
----------
V
--------
A
I
-
D
V
P
-----
A
L
G
----
L
Q
Q
I
RQYSLS
D
M
----
P
N
G
R
--
T
Y
R
------------
I
S
V
K
R
E
G
G
------
G
---
P
Q
--
P
-----
P
G
Y
--
V
SNLLHDH
V
N
-
V
G
D
--
Q
V
---
K
L
A
A
-----------
P
-
Y
G
S
----------
F
H
---
I
--------------------
14
PsiBlast_PDB
55.16
27%
-62
- C7 -
-
2Y3U
1
?
A:
[132-196]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
N
P
N
F
K
L
------
G
T
A
V
Q
D
E
V
--
I
T
S
L
G
------------------
K
L
--
I
G
N
-
A
S
A
N
----------
A
--------
E
V
-
V
N
N
-----
C
V
P
----
V
L
K
Q
------------------------------------
F
R
E
N
L
------
N
---
Q
Y
--
A
-----
P
D
Y
--
V
----------
K
G
T
--
A
V
--
N
E
L
------------------------------------------------------
46
Fugue
54.96
21%
-94
- C- -
-
2VY8
-
PB2_I75A3
A:
[537-693]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GEINGPESVLVNTYQW
I
I
R
N
W
E
T
---
V
K
I
Q
W
S
-------
Q
N
P
T
M
L
Y
N
K
------
M
E
F
E
P
F
Q
S
LV
P
K
A
I
R
------------------
G
Q
--
Y
S
G
-
F
V
R
T
----------
L
FQQMRDVL
G
T
-
D
T
T
-----
Q
I
I
----
K
L
L
P
------
F
A
----
A
A
P
P
--
E
Q
S
RMQFSSLTVNVG
M
R
I
L
V
R
G
N
------
S
PVF
N
Y
--
N
-----
K
T
T
KR
L
-------
T
I
-
L
G
K
--
D
A
--
G
T
L
I
P
----------
D
T
-
S
G
V
-
E
-------
S
---------------
A
----
V
L
--
R
G
48
SP3
53.92
15%
12
* C9 *
-
2TRX
4
THIO_ECOLI
A:
[1-108]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S
D
K
I
I
H
L
T
DDS
F
D
T
D
V
L
-------
K
A
D
G
A
I
L
V
D
FWAEWC
G
P
C
K
M
I
-
A
--
P
I
L
D
E
------------------
I
A
DE
Y
Q
G
-
K
L
T
V
----------
A
--------
K
L
-
N
I
D
-----
Q
N
P
----
G
T
A
P
------
K
Y
----
G
I
-------------------------------------
R
G
--
I
-----
P
T
L
--
L
-------
L
F
K
N
G
E
--
V
A
--
A
T
K
V
G
---------
A
L
S
-
K
G
Q
L
K
-------
E
F
L
---
D
---
A
N
---------
L
A
----
50
SP3
51.68
15%
53
- C9 -
-
1ERV
-
?
?:
[1-105]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
-
V
K
Q
---
I
E
S
K
T
A
FQEALDA
A
G
D
K
L
V
V
V
D
FSATWC
G
P
C
K
M
I
-
K
--
P
F
F
H
S
------------------
L
S
EK
Y
S
N
V
I
F
L
E
----------
V
--------
D
V
-
D
D
C
-------
Q
----
D
V
A
S
------
E
C
----
E
V
-------------------------------------
K
S
--
M
-----
P
T
F
--
Q
-------
F
F
K
K
G
Q
--
K
V
--
G
E
F
S
G
---------
A
N
K
-
E
K
L
-
E
-------
A
T
I
---
N
---
E
L
-
V
-------------