@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : EQB57516_1_CG: (2018-03-14 )
GCQVELLNINQAVVGSGCVQMNYYANIYDSITRAGYTVNANNNCGLSFSGSQRIPDGYSLRRAISSLALIRFF
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------...-......10.......--.20----..-----.......30....----....40........50...-----...--.-------.-60....-----....70..-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------G
C
Q
-
V
E
L
L
NIN
Q
A
VVGS
G
C
--
V
Q
-----
M
N
-----
Y
Y
A
N
I
Y
D
S
I
T
RA
G
----
Y
T
V
NANNNC
G
L
S
FSGSQRI-----PD
G
--
Y
-------
S
-
L
R
R
A
I
S
-----
S
L
A
L
IRFF-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
81.14
32%
-122
* C5 *
-
2MM2
-
?
A:
[1-65]
-----------------------------------------------------------------------------------------------------------------------------------------------
N
C
T
-
A
N
I
L
N
I
N
E
V
V
I
A
T
G
C
--
V
P
-----
A
G
-----
G
N
L
I
I
R
V
G
-
S
D
H
S
----
Y
L
I
R
A
T
V
S
C
G
L
S
L
N
P
S
Q
S
F
-----
I
N
G
--
E
-------
S
-
L
A
S
G
G
R
-----
C
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
77.23
33%
-121
- C5 -
-
2MM0
-
?
A:
[1-61]
-----------------------------------------------------------------------------------------------------------------------------------------------
N
C
V
-
A
N
I
L
N
I
N
E
A
V
I
A
T
G
C
--
V
P
-----
A
G
-----
G
E
L
R
I
F
V
G
S
-
S
H
S
----
Y
L
I
K
A
T
S
S
C
G
L
S
L
T
-
N
Q
V
F
-----
I
N
G
--
E
-------
S
-
V
Q
S
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
75.39
36%
-102
- C5 -
-
2MM2
-
?
A:
[2-59]
------------------------------------------------------------------------------------------------------------------------------------------------
C
T
-
A
N
I
L
N
I
N
E
V
V
I
A
T
G
C
--
V
P
-----
A
G
----------
G
N
L
I
I
R
V
G
SD
H
S
Y
L
I
R
A
T
V
S
C
G
L
S
L
N
P
S
Q
S
F
-----
I
N
G
--
E
-------
S
-
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
73.30
33%
-135
- C5 -
-
2MM0
-
?
A:
[2-59]
------------------------------------------------------------------------------------------------------------------------------------------------
C
V
-
A
N
I
L
N
I
N
E
A
V
I
A
T
G
C
--
V
P
-----
A
G
-----
G
E
L
R
I
F
V
G
S
S
H
S
-----
Y
L
I
K
A
T
S
S
C
G
L
S
L
T
-
N
Q
V
F
-----
I
N
G
--
E
-------
S
-
V
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
60.40
21%
-24
- C1 -
-
3F62
-
?
A:
[18-125]
-----------------------------------------------------------------------------------------------------------------------------------------GAM
V
E
T
K
C
P
N
L
D
I
V
T
S
S
G
E
F
H
C
S
G
C
--
V
E
HMPEF
S
Y
-----
M
Y
W
L
A
K
D
M
K
S
D
E
D
----
T
K
F
I
E
H
L
G
D
G
I
N
E
D
E
T
V
R
T
-----
T
D
G
G
I
T
-------
T
-
L
R
K
V
L
H
V
TDTN
K
F
A
H
Y
R
F
T
C
V
L
T
T
LD
G
V
S
K
K
N
I
W
L-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
51.33
18%
-76
- C4 -
-
2N3G
-
DRB4_ARATH
A:
[1-72]
-----------------------------------------------------------------------------------------------------------------------------------------------
M
D
H
-
V
Y
K
G
Q
L
Q
A
Y
A
L
Q
H
N
---
L
E
-----
L
P
-----
V
Y
A
N
E
R
E
G
P
P
H
A
P
----
R
F
R
C
N
V
T
F
C
G
Q
T
F
Q
S
S
E
F
F
-----
P
T
L
--
K
-------
S
-
A
E
H
A
A
A
-----
K
I
A
V
A
S
L
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
49.41
15%
37
- C4 -
-
1HQB
-
DLTC_LACP3
A:
[2-81]
--------------------------------------------------------------------------------------------------------------------------------------------ADE
A
I
K
-
N
G
V
L
D
I
L
A
D
L
T
G
S
D
D
--
V
K
-----
K
N
LDLNL
F
E
T
G
L
L
D
S
M
G
T
V
Q
----
L
L
L
E
L
Q
S
Q
F
G
V
D
A
P
V
S
E
F
D
-----
R
K
E
--
W
-------
D
T
P
N
K
I
I
A
-----
K
V
E
Q
A
Q
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
48.37
15%
-142
* C6 *
-
5F5E
1
A:
[19-52]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
----
V
G
V
Y
R
S
P
I
H
G
R
G
L
F
C
K
R
N
I
-----
D
A
G
--
E
-------
M
-
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
45.67
15%
-88
* C4 *
-
1GYZ
-
RL20_AQUAE
A:
[59-118]
----------------------------------------------------------------------------------------------------------------------------------------------------
W
I
A
R
I
N
A
A
V
R
A
Y
G
-----------
L
-----
N
Y
S
T
F
I
N
G
L
K
K
A
G
----
I
E
L
D
R
K
I
L
A
D
M
A
V
R
D
P
Q
A
F
-----
E
Q
V
--
V
-------
N
-
K
V
K
E
A
L
-----
Q
V
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
45.37
20%
-40
- C4 -
-
5EK8
-
?
A:
[1-668]
M
S
T
K
T
K
T
I
F
D
E
I
K
A
A
L
V
L
K
V
I
D
S
P
L
G
R
K
L
I
E
E
K
A
E
K
Q
VSKTQEAITKPIEQ
L
N
K
A
T
G
Q
L
L
F
SDTNKPLHN
I
E
L
E
V
W
D
R
D
V
G
T
P
S
D
Y
L
G
K
G
V
T
D
QNG
R
F
E
I
Y
Y
D
PEKAGFKDAPD
L
E
L
R
V
I
D
N
R
V
T
F
D
SDN
Q
P
V
Y
T
N
R
I
A
Y
I
I
K
G
G
D
-----
N
V
T
Q
K
T
Y
D
F
G
T
--
L
T
-----
V
P
-----
Y
W
P
Y
D
P
N
S
---------------
P
F
A
R
I
F
M
P
N
P
E
E
T
-----
P
D
D
--
Y
-------
S
-
V
G
R
K
F
Q
-----
A
Y
A
S
A
N
V
L
T
P
I
K
A
K
H
T
I
A
N
T
L
NPKEPS
L
T
Q
I
Q
A
D
Y
PPN
L
T
I
N
L
D
R
E
KPGYTRS
D
E
Y
F
V
L
R
V
L
NGMNPCL
L
K
R
S
KSDPN
Q
F
K
M
S
F
I
WDN
Y
E
K
D
TE
H
D
L
H
N
V
E
A
Y
F
V
L
K
DG
K
L
F
P
T
M
I
T
I
Q
S
R
YPDSLAPHSPLKD
R
E
V
Y
T
PNDG
E
K
W
L
Q
A
K
R
I
F
R
T
A
A
L
F
D
G
E
A
IEHYAKAH
V
Q
M
E
Q
Y
A
V
A
C
F
R
NLRKNPIRLMLTPHLKS
I
I
N
I
N
R
R
G
DDLLVEPNLG
L
F
V
T
N
GPLT
Y
P
G
F
L
Q
M
C
T
E
V
V
A
T
YDWKD
W
Q
P
R
Q
P
ICDDH
K
Y
A
K
A
A
N
L
Y
W
Q
I
L
T
E
Y
V
D
A
F
F
A
K
H
Q
Q
A
I
A
D
E
W
V
E
I
R
R
F
S
E
D
L
V
E
H
SMPYQPIEGIMANTDSDYEWYDTGELDKPDL
P
R
A
T
F
NGKTKVIRPITNSNQPS
A
T
D
I
D
N
L
K
Q
C
C
R
H
I
I
F
H
T
T
L
W
H
T
W
V
N
D
S
Q
SDEGGELAYNSLALRNGSFGSETDPNIAPD
P
I
E
A
T
N
Q
V
Y
I
F
S
V
L
N
G
IKYGLLVKNEDDDVP
E
E
L
R
T
A
L
L
N
R
K
D
Q
F
A
E
L
GIDIGNIRTLINI
14
HHSearch
43.29
15%
-119
- C6 -
-
5F6L
1
A:
[19-47]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
----
V
G
V
Y
R
S
P
I
H
G
R
G
L
F
C
K
R
N
I
-----
D
A
G
--
E
-------
M
-
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
41.80
42%
23
- C2 -
-
3AL0
-
GATB_THEMA
B:
[136-170]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
S
I
T
R
A
S
----
Y
S
L
V
D
M
N
R
C
G
V
P
L
I
E
I
V
T
E
-----
P
D
I
--
S
-------
S
-
P
R
E
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
38.84
31%
36
- C5 -
-
5UMI
-
C:
[33-92]
------------------------------------------------------------------------------------------------------------------------------------------------------
F
N
T
N
T
A
V
A
V
T
G
W
--
Q
T
-----
I
N
G
K
K
--
Y
Y
F
N
T
N
T
S
I
A
S
T
G
----
Y
T
I
I
S
G
K
H
F
Y
F
N
T
D
G
I
M
Q
I
G
V
F
K
G
P
D
G
--
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
38.31
21%
84
- C4 -
-
1R5E
-
?
A:
[29-133]
--------------------------------------------------------------------------------------------------------------------------------DNVT
S
S
Q
L
L
S
V
R
H
Q
L
A
E
S
-
A
G
L
P
R
D
Q
H
E
F
V
S
S
Q
A
P
Q
S
L
-----
R
N
-----
R
Y
N
N
L
Y
S
H
T
Q
R
T
L
----
D
M
A
D
M
Q
H
R
---
Y
M
T
G
A
S
G
I
-----
N
P
G
--
M
L
P
H
E
N
V
D
D
-
M
R
S
A
I
T
-----
D
W
S
D
M
R
E
A
L
Q
H
A
M
G
I
H
A
D
I------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
34.99
29%
-11
- C3 -
-
1MJO
-
METJ_ECOLI
D:
[63-79]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
A
F
T
G
Q
P
L
-----
P
D
D
--
A
-------
D
-
L
R
K
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
34.19
20%
-66
* C3 *
-
2AB3
-
?
A:
[1-29]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
----
V
Y
V
C
H
F
E
N
C
G
R
S
F
N
D
R
R
K
L
-----
N
R
H
--
K
-------
K
-
I
H
T
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
29.86
21%
-80
- C5 -
-
2KZB
-
ATG19_YEAST
A:
[332-360]
-----------------------------------------------------------------------------------------------------------------------------------------------
G
S
T
-
I
E
I
E
N
Q
Y
G
E
V
I
F
L
G
K
--
Y
G
-----
S
S
-----
P
M
I
N
L
R
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
28.96
9%
-82
- C5 -
-
2KZK
-
ATG34_YEAST
A:
[318-339]
-----------------------------------------------------------------------------------------------------------------------------------------------
N
Y
T
-
M
K
V
V
N
Q
D
G
E
T
I
L
V
G
K
--
C
A
-----
D
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
27.01
29%
65
- C3 -
-
1CMC
-
METJ_ECOLI
B:
[63-79]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
A
F
T
G
Q
P
L
-----
P
D
D
--
A
-------
D
-
L
R
K
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
23.97
15%
35
- C4 -
-
1E68
-
?
A:
[1-70]
------------------------------------------------------------------------------------------------------------------------------------------MAKEF
G
I
P
-
A
A
V
A
G
T
V
L
N
V
V
E
A
G
G
---
W
-----
V
T
-----
T
I
V
S
I
L
T
A
V
G
S
G
G
----
L
S
L
L
A
A
A
G
---
R
E
S
I
K
A
Y
L
-----
K
K
E
--
I
-------
K
-
K
K
---
G
-----
K
R
A
V
I
A
W
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------