@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : EQB58061_1_CG: (2018-03-14 )
DCNVALKNDFDVQVGSGCISKTDGGYILASGKNFFVQVTESCGIDVLYLPNTWSAQSLGPC
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20-........----------30..--.--......40..-....---------..50-........60---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DC
N
V
A
LKNDF
D
V
QVGSGCISK-TDG
G
Y
I
L
A----------S-G
K
--
N
--
F
F
V
Q
V
T
E
SCG-
I
D
V
L
---------
Y
LPN-TWSAQSLGPC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
79.63
25%
-
* C6 *
-
4NOM
-
LGMN_MOUSE
A:
[26-432]
---------------------------------------------------------------------------------------EDG
G
K
H
W
V
V
I
V
A
GSNGWYNY
R
H
Q
A
D
A
C
H
A
Y
Q
I
I
H
R
N
GIPDEQ
I
I
V
M
M
YDDIANSEENPTPGVVINRPNGTDVYKGVLKDYTGEDVT
P
E
N
F
L
A
V
L
R
G
D
A
E
A
V
K
G
K
G
-------
S
G
K
V
L
K
----------
S
-
G
P
--
R
D
H
V
F
I
Y
F
T
D
H
G
A
-
T
G
I
L
---------
V
F
P
N
D
D
L
H
V
K
D
L
N
K
T
I
R
Y
M
Y
E
H
KMYQ
K
M
V
F
Y
I
E
A
C
ESGSMMNHLPDDIN
V
Y
A
T
T
AANPK
E
S
S
Y
A
C
YYDEERGTYLGD
W
Y
S
V
N
W
M
E
D
S
D
V
EDLTKET
L
H
K
Q
Y
H
L
V
K
S
H
TNT
S
H
V
M
Q
Y
G
N
K
S
I
S
T
MKVMQFQGMKHRASS
P
I
S
L
P
P
VTHLDLTPSPD
V
P
L
T
I
L
K
R
K
L
L
R
T
ND
V
K
E
S
Q
N
L
I
G
Q
I
Q
Q
F
L
D
A
R
H
V
I
E
K
S
V
H
K
I
V
S
L
L
AGFG
E
T
A
E
R
H
L
SERTMLTA
H
D
C
Y
Q
E
A
V
T
H
F
R
T
HCFNWHSVTYEHALRY
L
Y
V
L
A
N
L
C
E
A
PYP
I
D
R
I
E
M
A
M
D
K
V
CL
4
HHSearch
77.99
25%
-54
* C4 *
-
2MM0
-
?
A:
[1-64]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
C
V
A
N
I
L
N
I
N
E
A
V
I
A
T
G
C
V
P
A
-
G
G
E
L
R
I
F
V
----------
G
S
S
H
--
S
--
Y
L
I
K
A
T
S
S
C
G
-
L
S
L
T
N
Q
-------
V
F
I
N
-
G
E
S
V
Q
S
G
G
R
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
75.83
24%
-60
- C4 -
-
2MM2
-
?
A:
[1-65]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
C
T
A
N
I
L
N
I
N
E
V
V
I
A
T
G
C
V
P
A
G
G
N
L
I
I
R
V
G
----------
S
-
D
H
--
S
--
Y
L
I
R
A
T
V
S
C
G
-
L
S
L
N
PS
Q
------
S
F
I
N
-
G
E
S
L
A
S
G
G
R
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
70.04
25%
-73
- C6 -
-
4AW9
3
LGMN_HUMAN
A:
[1-263]
-----------------------------------------------------------------------------------------GGK
H
W
V
V
I
V
A
GSNGWYN
Y
R
H
Q
A
D
A
C
H
A
Y
Q
I
I
H
R
N
GIPDEQ
I
V
V
M
M
YDDIAYSEDNPTPGIVINRPNGTDVYQGVPKDYTGEDVT
P
Q
N
F
L
A
V
L
R
G
D
A
E
A
V
K
G
I
G
-------
S
G
K
V
L
K
----------
S
-
G
P
Q
D
H
--
V
F
I
Y
F
T
D
H
G
S
-
T
G
I
L
---------
V
F
P
N
E
D
L
H
V
K
D
L
N
E
T
I
H
Y
M
Y
K
H
KMYR
K
M
V
F
Y
I
E
A
C
ESGSMMNHLPDNIN
V
Y
A
T
T
AANPR
E
S
S
Y
A
C
YYDEKRSTYLGD
W
Y
S
V
N
W
M
E
D
S
D
V
EDLTKET
L
H
K
Q
Y
H
L
V
K
S
H
TQT
S
H
V
M
Q
Y
G
N
K
T
I
S
T
MKVMQFQGMKR----------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
53.65
27%
70
- C3 -
-
5GNR
1
MFN1_HUMAN
A:
[4-416]
PVS
P
L
K
H
F
V
L
A
K
K
A
I
T
A
I
F
D
Q
L
L
E
F
V
T
E
G
S
H
F
V
E
A
T
Y
K
NPELDRIAT
E
D
D
L
V
E
M
Q
G
Y
K
D
K
L
S
I
I
G
E
V
L
S
R
R
H
M
K
V
A
F
F
G
R
TSSG
A
S
S
V
I
N
A
M
L
WDKVLPSGIGHITN
C
F
L
S
V
E
G
T
DGD
K
A
Y
L
M
T
E
GSDEKKSVKTVNQLAA
G
C
L
V
R
V
F
W
PKAKC
A
L
L
R
D
D
L
V
L
V
D
S
PGTDELDSW
I
D
K
F
C
L
D
A
D
V
F
V
L
V
A
N
---
S
E
-
S
T
---
L
M
N
----------
T
-
E
K
--
H
--
F
F
H
K
V
N
E
R
L
S
K
P
N
I
F
---------
I
L
N
N
-
R
W
D
A
S
A
S
E
P
E
Y
M
E
D
V
R
R
Q
H
M
E
R
C
L
H
F
L
V
EELKVVN
A
L
E
A
Q
N
R
I
F
F
V
S
A
K
E
V
L
S
A
R
K
Q
KAQGSGVALAEG
F
H
A
R
L
Q
E
F
Q
N
F
E
Q
I
F
E
E
C
I
S
Q
S
A
V
K
T
K
F
E
Q
H
T
I
R
A
K
Q
I
L
A
T
V
K
N
I
M
D
S
V
N
L
A
A
E
D
GSGLPK
E
I
D
Q
L
E
K
I
Q
N
N
S
K
L
L
R
N
K
A
V
Q
L
E
N
E
L
E
N
F
T
K
Q
FLPS---------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
46.15
32%
-15
- C2 -
-
2JER
-
AGUA_ENTFA
A:
[276-307]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
V
T
I
K
G
S
F
K
I
D
F
V
E
G
T
M
P
R
-
E
D
G
D
I
C
I
A
----------
S
-
Y
M
--
N
--
F
L
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
45.65
14%
-24
- C3 -
-
2MPN
-
YGAP_ECOLI
A:
[106-173]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------K
S
Q
P
L
P
L
M
R
Q
V
Q
I
A
A
G
G
L
I
L
I
G
-
V
V
L
G
Y
T
V
N
SGFFLLSGFV
G
-
A
G
--
L
--
L
F
A
G
I
S
G
F
S
G
-
M
A
R
L
---------
L
D
K
M
-
P
W
N
Q
R
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
44.83
11%
-102
- C5 -
-
4EPD
-
URE2_KLEAE
B:
[26-70]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
E
N
-
H
G
D
R
P
I
Q
V
----------
G
-
S
H
--
Y
--
H
F
A
E
V
N
P
--
A
-
L
K
F
D
RQQAAGYRL
N
I
P
A
-
G
T
A
V
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
44.64
14%
-108
- C5 -
-
4Z42
-
?
E:
[60-104]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
R
N
-
T
G
D
R
P
I
Q
V
----------
G
-
S
H
--
F
--
H
F
F
E
V
N
R
--
A
-
L
E
F
D
RAAAYGKRL
N
I
S
S
-
T
T
A
I
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
44.06
33%
-80
- C1 -
-
1TU1
-
?
A:
[14-22]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
I
P
D
-
A
W
Q
D
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
42.98
11%
-92
- C5 -
-
4EP8
-
URE2_KLEAE
B:
[26-70]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
E
N
-
H
G
D
R
P
I
Q
V
----------
G
-
S
H
--
Y
--
H
F
A
E
V
N
P
--
A
-
L
K
F
D
RQQAAGYRL
N
I
P
A
-
G
T
A
V
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
41.72
45%
-64
- C3 -
-
2ZHG
2
SOXR_ECOLI
A:
[110-129]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
A
L
R
D
E
L
D
G
C
I
G
C
G
C
L
S
R
-
S
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
35.34
45%
-21
- C3 -
-
2ZHH
2
SOXR_ECOLI
A:
[110-129]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
A
L
R
D
E
L
D
G
C
I
G
C
G
C
L
S
R
-
S
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
33.68
13%
57
- C3 -
-
1EX2
1
MAF_BACSU
A:
[1-185]
---------------------------------------------------M
T
K
P
L
I
L
ASQS
P
R
R
K
E
L
L
D
L
L
Q
L
P
Y
S
I
I
V
S
E
V
E
E
K
L
N
RNFS
P
E
E
N
V
Q
W
L
A
K
Q
K
A
K
A
V
A
D
L
H
PH
A
I
V
I
G
A
D
T
M
V
C
L
DG
E
C
L
G
K
PQD
Q
E
E
A
A
S
M
L
R
R
L
SG
R
S
H
S
V
I
T
A
V
S
I
Q
A
EN
H
S
E
T
F
Y
D
K
T
E
V
A
F
W
S
L
S
E
E
E
I
W
T
Y
I
E
T
K
E
P
M
D
-
K
A
G
A
Y
G
I
Q
----------
G
-
R
G
--
A
--
L
F
V
K
K
I
D
G
D
Y
-
Y
S
V
M
---------
G
L
P
I
-
S
K
T
M
R
A
L
R
H
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
29.46
6%
-67
* C5 *
-
3QGK
-
?
J:
[133-175]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
T
N
-
K
G
P
K
S
L
H
V
----------
G
-
S
H
--
F
--
H
F
F
E
A
N
R
--
A
-
L
E
F
D
REKAYGKRL
D
I
P
S
-
G
N
T
L
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
27.51
9%
-14
- C4 -
-
2KZK
-
ATG34_YEAST
A:
[318-339]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
Y
T
M
K
V
V
N
Q
D
G
E
T
I
L
V
G
K
C
A
D
-
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
27.46
10%
2
- C4 -
-
2KZB
-
ATG19_YEAST
A:
[332-352]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
T
I
E
I
E
N
Q
Y
G
E
V
I
F
L
G
K
Y
G
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
24.10
23%
-25
- C3 -
-
2LO7
-
KA20_TITSE
A:
[1-23]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
G
C
M
K
E
-
Y
C
A
G
Q
C
R
G
----------
K
V
S
Q
--
D
--
Y
C
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
22.72
19%
6
* C3 *
-
2LV6
-
B:
[1-26]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
R
R
-
W
K
K
N
F
I
A
V
----------
S
-
A
A
--
N
--
R
F
K
K
I
S
S
S
G
A
-
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
22.58
22%
49
- C3 -
-
2LBG
-
A:
[1-27]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
H
M
A
G
A
A
A
A
G
A
V
V
G
-
G
L
G
G
Y
M
L
G
----------
S
-
A
M
--
S
--
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------