@TOME V2.3
(Mar 2018)
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
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Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : spr0015: (2017-12-13 )
MLDLQPKKSSDIFFQILYLLLTDLLMSDHILDKNKYRILFHQSKQVLGALNY
Atome Classification :
(17 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10.....-...20--..-------.------...-..30.......----..40........50.----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MLDLQPKKSS
D
I
F
F
Q
I
-
L
Y
L
L
L
--
T
D
-------
L
------
L
M
S-DHI-LDKN
K
Y
R
----
I
L
F
HQS
K
Q
V
LGALNY----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
69.21
28%
6
- C1 -
-
1OGO
1
DEXT_TALMI
X:
[3-574]
TTANTHCGADFCTWWHDSGEINTQTPVQPGNVRQSHKYSVQVSLAGTNNFHDSFVYESIPRNGNGRIYAPTDPPNSNTLDSSVDDGISIEPSIGLNMAWSQFEYSHDVDVKILATDGSSLGSPSDVVIRPVSISYAISQSDDGGIVIRVPADANGRKFSVEFKTDLYTFLSDGNEYVTSGGSVVGVEPTNALVIFASPFLPSGMIPHMTPDNTQTMTPGP
I
N
N
G
D
W
G
A
K
S
I
L
Y
F
P
P
G
V
Y
W
M
N
--
Q
D
-------
Q
SGNSGK
L
G
S
-
N
H
I
R
L
N
S
N
T
Y
W
----
V
Y
L
A
P
G
A
Y
V
K
G
A
I
E
Y
FTKQNFYATGHGILSGENYVYQANAGDNYIAVKSDSTSLRMWWHNNLGGGQTWYCVGPTINAPPFNTMDFNGNSGISSQISDYKQVGAFFFQTDGPEIYPNSVVHDVFWHVNDDAIKIYYSGASVSRATIWKCHNDPIIQMGWTSRDISGVTIDTLNVIHTRYIKSETVVPSAIIGASPFYASGMSPDSRKSISMTVSNVVCEGLCPSLFRITPLQNYKNFVVKNVAFPDGLQTNSIGTGESIIPAASGLTMGLAISAWTIGGQKVTMENFQANSLGQFNIDGSYWGEWQIS
1
HHSearch
68.24
29%
-457
- C4 -
-
3O7B
-
NEP1_ARCFU
A:
[86-116]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
P
D
I
V
H
Q
C
-
L
L
L
L
L
--
D
S
-------
P
------
L
----------
R
D
F
E
----
V
Y
V
H
T
L
N
G
E
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
66.62
24%
22
- C3 -
-
2DST
-
?
A:
[2-123]
--------------------------------------------------------------------------------------------------------------------------------------------------R
R
A
G
Y
L
HLYG
L
N
L
V
F
D
R
V
G
K
G
P
P
V
L
L
V
A
EEASRWP
E
A
L
P
E
GYA
F
Y
L
L
DLPGYGR
T
E
G
P
RMA
P
E
E
L
A
H
F
V
A
G
F
A
V
M
M
N
L
G
A
-----------
P
W
V
L
L
R
G
L
G
-------
L
------
A
L
G
-
P
H
L
-
E
A
L
G
L
-
R
----
A
L
P
A
E
G
V
E
V
A
E
V
L
S
S
K
L
S
YG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
54.74
32%
-116
- C4 -
-
4GHL
-
VP35_MABVP
C:
[12-42]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
S
A
--
K
D
-------
L
AL----
L
L
F
-
T
H
L
----
P
G
N
N
----
T
P
F
H
I
L
A
Q
V
L
S
K
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
53.04
27%
-44
* C3 *
-
5F9P
1
?
A:
[1-241]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P
I
I
S
-----
A
E
D
K
H
L
T
V
-
L
N
L
F
T
--
T
D
T
P
E
K
Q
G
K
L
------
I
E
E
M
T
K
I
-
V
D
A
A
T
Y
E
GWM
S
S
T
V
H
S
G
V
D
S
H
G
T
L
N
F
IQWRS
G
E
D
L
E
K
R
Y
A
GEEFKHR
T
L
P
V
F
G
E
I
TT
S
I
R
L
M
Q
N
E
VA
H
T
L
T
SDALG
G
K
I
E
I
G
PGRDDY
T
V
F
T
V
F
PVTPQG
Q
D
E
A
L
D
A
L
G
P
G
Q
AFLAQVPGFR
A
H
V
V
L
K
G
LRARGLE
G
A
F
V
I
S
Y
S
Q
W
DS
K
Q
A
W
E
A
Y
R
D
QAPQDQD
E
A
R
K
A
A
V
G
R
V
R
A
V
VA
G
E
P
Y
S
N
T
Y
Q
VV
H
T
R
S
AGEKLAAALEHHH---------------------------------------------------------------------------------------------------------------
11
Fugue
50.99
19%
128
- C4 -
-
5KS5
-
A:
[1-103]
------------------------------------------------------------------------------------------------------------------------------------------------------------------GSHMSPDRCQ
D
W
L
E
A
L
H
W
YNTALEMTDCDE
G
G
E
Y
D
GMQDEP
R
Y
M
M
L
A
R
E
A
E
M
L
F
T
GGY
G
L
E
K
D
P
Q
R
S
G
D
L
Y
T
Q
A
-
A
E
A
A
M
--
E
A
-------
M
------------------
K
G
R
----
L
A
N
Q
Y
Y
Q
K
A
E
E
A
W
A
Q
M
E
E-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
46.92
21%
-252
- C4 -
-
1BL1
-
A:
[7-25]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
N
E
T
R
E
R
E
V
F
D
R
-
L
G
M
I
Y
--
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
44.15
13%
-35
- C4 -
-
4AXG
-
CUP_DROME
C:
[23-81]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
V
S
S
K
P
V
K
S
Y
T
-------------------------------
R
-
S
R
L
-
M
D
I
R
N
G
M
----
I
E
L
E
G
R
L
R
R
M
N
I
W
R
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
43.90
32%
-113
- C4 -
-
4GHL
1
VP35_MABVP
A:
[7-42]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
S
K
-
P
N
L
S
A
--
K
D
-------
L
A
L
----
L
L
F
-
T
H
L
----
P
G
N
N
----
T
P
F
H
I
L
A
Q
V
L
S
K
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
41.81
25%
-55
- C4 -
-
2DRN
-
C:
[1-24]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
-
I
E
E
A
A
S
R
----
I
V
D
A
V
I
E
Q
V
K
A
A
G
A
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
37.85
42%
-94
- C4 -
-
4YYP
-
B:
[3-14]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
Y
R
----
F
L
T
E
Q
D
R
Q
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
34.82
15%
145
- C4 -
-
2N7Q
-
A:
[9-54]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
S
K
E
L
E
L
I
T
L
T
V
-
G
F
G
I
L
--
I
F
-------
S
------
L
I
V
-
T
Y
C
-
I
N
A
K
A
D
V
----
L
F
I
A
P
R
E
P
--
G
A
V
S
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
32.95
26%
15
* C4 *
-
1N6J
-
G:
[4-29]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
--
P
K
-------
G
------
S
I
S
-
E
E
T
-
K
Q
K
L
K
S
A
----
I
L
S
A
Q
S
A
A
N
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
28.37
17%
-
- C- -
-
3RHI
-
?
A:
[73-90]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
S
K
V
----
P
A
F
K
A
G
K
E
L
K
E
A
V
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
24.02
12%
118
- C4 -
-
1RIY
-
DBH_THEMA
A:
[74-90]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
K
V
----
P
K
F
K
P
G
K
A
L
K
E
K
V
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
23.64
17%
-
- C4 -
-
3RHI
-
?
C:
[73-90]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
S
K
V
----
P
A
F
K
A
G
K
E
L
K
E
A
V
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
14.55
12%
52
- C2 -
-
5D92
-
?
B:
[28-44]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
L
Q
-
R
A
G
-
F
D
V
R
F
F
D
----
E
L
S
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------