@TOME V2.3
(Mar 2018)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : spr0029: (2017-12-14 )
MEQLHFITKLLDIKDPNVQILNIINKDTHKEIIAKLDYDAPSCPECGNQLKKYDFQKPSKIPYLETTGIPTRILLRKRRFKCYHCSKMMVAETSDDVQSYFFSFYYITVLNLALLDSPLLSIYSEKRRKT
Atome Classification :
(20 SA)
----------------------------------------------------------------....--.....10......-..20.---.--------------..---....30......-------..40.-------.......-50...-.....60------..---------------.....---.70--....---..----..------.80--......------...90...-..------...100---...----...---...110--------.......120.......130----------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
----------------------------------------------------------------M
E
Q
L
--
H
F
I
T
K
L
LDIKDPN-
V
Q
I
L
N
---I--------------IN---K
D
T
H
K
E
I
I
A
K
LD-------YDAPS-------
C
P
E
C
G
N
Q
-
L
K
KYD-FQKPSKI------P
Y
---------------
L
ETTG---I
P
---
T
R
I
L
---
L
R
----
K
R
------
R
F
---
K
C
Y
HCS------
K
M
M
VAET
S
-
D
D
------
V
Q
S
Y
-----
F
F
S
----
F
Y
Y
---
I
T
V
L
N
L
--------
A
L
LD
S
P
L
L
S
I
Y
S
E
K
RRKT------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_CBE
59.97
31%
-41
- C7 -
-
3LGM
1
HDOX2_STAAN
B:
[37-103]
------------------------------------------------------------------
Q
Q
--
M
F
V
T
K
T
L
N
T
E
D
T
D
E
V
K
I
L
T
---
I
WESEDSFNNWLNSD
V
F
---
K
E
A
H
K
N
V
R
L
K
S
D
-------
D
D
G
Q
Q
-------
S
P
I
L
S
N
K
-
V
F
K
Y
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
59.10
31%
-43
- C7 -
-
4FNH
1
HDOX2_STAAN
A:
[37-103]
------------------------------------------------------------------
Q
Q
--
M
F
V
T
K
T
L
N
T
E
D
T
D
E
V
K
I
L
T
---
I
W
ES
E
D
S
F
N
N
Y
L
N
S
D
V
F
---
K
E
A
H
K
N
V
R
L
K
S
D
-------
D
D
G
Q
Q
-------
S
P
I
L
S
N
K
-
V
F
K
Y
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_CBE
58.98
31%
-33
- C7 -
-
3LGN
2
HDOX2_STAAN
B:
[37-103]
------------------------------------------------------------------
Q
Q
--
M
F
V
T
K
T
L
N
T
E
D
T
D
E
V
K
I
L
T
---
I
W
ES
E
D
S
F
N
N
W
L
N
S
D
V
F
---
K
E
A
H
K
N
V
R
L
K
S
D
-------
D
D
G
Q
Q
-------
S
P
I
L
S
N
K
-
V
F
K
Y
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
57.74
31%
-32
- C7 -
-
3LGM
1
HDOX2_STAAN
A:
[37-103]
------------------------------------------------------------------
Q
Q
--
M
F
V
T
K
T
L
N
T
E
D
T
D
E
V
K
I
L
T
---
I
W
ES
E
D
S
F
N
N
W
L
N
S
D
V
F
---
K
E
A
H
K
N
V
R
L
K
S
D
-------
D
D
G
Q
Q
-------
S
P
I
L
S
N
K
-
V
F
K
Y
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_CBE
57.44
31%
-24
* C7 *
-
3QGP
1
HDOX2_STAAN
B:
[37-103]
------------------------------------------------------------------
Q
Q
--
M
F
V
T
K
T
L
N
T
E
D
T
D
E
V
K
I
L
T
---
I
WESEDSFNNWLNSD
V
F
---
K
E
A
H
K
N
V
R
L
K
S
D
-------
D
D
G
Q
Q
-------
S
P
I
L
S
N
K
-
V
F
K
Y
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
57.38
24%
4
- C2 -
-
3OC8
4
A:
[4-137]
----------------------------------------------------------------
M
E
------
I
Y
P
H
I
K
V
Y
E
G
T
-
L
S
R
L
K
-------------------------
P
G
G
A
M
I
A
V
L
E
-------
Y
D
--------------
V
N
E
-
L
S
K
H
G
-
Y
T
N
L
W
D
V
------
Q
F
---------------
K
V
L
V
G
---
V
P
HAE
T
G
V
I
YDP
V
Y
----
E
E
------
T
V
---
K
P
Y
Q
P
S
NNLTG
K
K
L
Y
N
V
S
T
N
-
D
M
HNGY
K
W
S
N
T
M
-----
F
S
N
----
S
N
Y
---
K
T
Q
I
L
L
--------
T
K
G
D
G
S
G
V
K
L
Y
S
K
A
Y
S
E
N
FK----------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
56.68
31%
-21
- C7 -
-
3LGN
2
HDOX2_STAAN
A:
[37-103]
------------------------------------------------------------------
Q
Q
--
M
F
V
T
K
T
L
N
T
E
D
T
D
E
V
K
I
L
T
---
I
W
ES
E
D
S
F
N
N
W
L
N
S
D
V
F
---
K
E
A
H
K
N
V
R
L
K
S
D
-------
D
D
G
Q
Q
-------
S
P
I
L
S
N
K
-
V
F
K
Y
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
56.40
31%
-10
- C7 -
-
3QGP
1
HDOX2_STAAN
A:
[37-103]
------------------------------------------------------------------
Q
Q
--
M
F
V
T
K
T
L
N
T
E
D
T
D
E
V
K
I
L
T
---
I
W
ES
E
D
S
F
N
N
W
L
N
S
D
V
F
---
K
E
A
H
K
N
V
R
L
K
S
D
-------
D
D
G
Q
Q
-------
S
P
I
L
S
N
K
-
V
F
K
Y
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
PsiBlast_CBE
56.03
31%
-10
- C7 -
-
4FNI
1
HDOX2_STAAN
B:
[37-103]
------------------------------------------------------------------
Q
Q
--
M
F
V
T
K
T
L
N
T
E
D
T
D
E
V
K
I
L
T
---
I
WESEDSFNNYLNSD
V
F
---
K
E
A
H
K
N
V
R
L
K
S
D
-------
D
D
G
Q
Q
-------
S
P
I
L
S
N
K
-
V
F
K
Y
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
PsiBlast_CBE
55.42
31%
-1
- C7 -
-
2ZDP
1
HDOX2_STAAN
B:
[37-103]
------------------------------------------------------------------
Q
Q
--
M
F
V
T
K
T
L
N
T
E
D
T
D
E
V
K
I
L
T
---
I
WESEDSFNNWLNSD
V
F
---
K
E
A
H
K
N
V
R
L
K
S
D
-------
D
D
G
Q
Q
-------
S
P
I
L
S
N
K
-
V
F
K
Y
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
55.16
31%
-11
- C7 -
-
4FNI
1
HDOX2_STAAN
A:
[37-103]
------------------------------------------------------------------
Q
Q
--
M
F
V
T
K
T
L
N
T
E
D
T
D
E
V
K
I
L
T
---
I
W
ES
E
D
S
F
N
N
Y
L
N
S
D
V
F
---
K
E
A
H
K
N
V
R
L
K
S
D
-------
D
D
G
Q
Q
-------
S
P
I
L
S
N
K
-
V
F
K
Y
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
54.96
31%
-1
- C7 -
-
2ZDP
1
HDOX2_STAAN
A:
[37-103]
------------------------------------------------------------------
Q
Q
--
M
F
V
T
K
T
L
N
T
E
D
T
D
E
V
K
I
L
T
---
I
W
ES
E
D
S
F
N
N
W
L
N
S
D
V
F
---
K
E
A
H
K
N
V
R
L
K
S
D
-------
D
D
G
Q
Q
-------
S
P
I
L
S
N
K
-
V
F
K
Y
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
PsiBlast_CBE
54.02
31%
0
- C7 -
-
4FNH
1
HDOX2_STAAN
B:
[37-103]
------------------------------------------------------------------
Q
Q
--
M
F
V
T
K
T
L
N
T
E
D
T
D
E
V
K
I
L
T
---
I
WESEDSFNNYLNSD
V
F
---
K
E
A
H
K
N
V
R
L
K
S
D
-------
D
D
G
Q
Q
-------
S
P
I
L
S
N
K
-
V
F
K
Y
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
49.58
31%
-36
- C7 -
-
1SQE
-
HDOX2_STAAM
A:
[51-117]
------------------------------------------------------------------
Q
Q
--
M
F
V
T
K
T
L
N
T
E
D
T
D
E
V
K
I
L
T
---
I
W
ES
E
D
S
F
N
N
W
L
N
S
D
V
F
---
K
E
A
H
---------------
D
D
G
Q
Q
-------
S
P
I
L
S
N
K
-
V
F
K
Y
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
49.45
17%
13
- C2 -
-
5DGG
-
?
A:
[3-184]
----------------------------------------------------------------
R
D
Q
M
Q
D
H
D
M
T
L
L
M
P
K
S
Q
G
R
-
I
V
V
M
A
---
V
--------------
L
N
RYD
S
H
S
A
N
A
I
I
E
T
L
A
-------
S
D
V
F
N
PEVH
Y
I
M
I
P
V
G
P
G
H
-
W
R
G
V
Y
-
L
S
K
P
T
A
Y
D
L
E
L
F
D
P
Y
GPEGAAVL
D
D
Y
V
L
D
L
L
N
Q
C
G
---
V
P
---
K
E
L
V
---
N
I
----
R
H
T
G
P
KHP
Q
G
---
D
A
Y
S
C
G
------
D
F
T
C
A
Y
S
H
-
K
K
------
M
K
E
F
GAPEG
S
Y
N
----
P
I
L
---
I
D
T
L
D
N
--------
L
G
N
E
D
N
V
L
R
M
T
T
R
E
E
T
R
A
L
V----------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
45.16
11%
-66
* C4 *
-
1BWZ
-
?
?:
[131-274]
----------------------------------------------------------------
T
A
N
K
--
F
E
K
N
Y
I
L
R
T
D
I
Q
T
-
V
L
C
G
A
---
V
--------------
S
M
---
G
N
P
H
C
V
V
Q
V
D
-
D
-------
I
Q
T
A
N
-------
V
E
Q
L
G
P
L
-
L
E
S
H
E
R
F
P
E
R
V
N
A
------
G
F
---------------
M
Q
I
I
N
KE
H
I
K
---
L
R
V
Y
---
E
R
GAGE
T
Q
------
A
C
---
G
S
G
A
C
A
------
A
V
A
V
G
I
M
Q
-
G
L
------
L
N
N
N
-----
V
Q
V
----
D
L
P
---
G
G
S
L
M
I
E
W
NGVG
H
P
L
Y
M
T
G
E
A
T
H
I
Y
D
G
F
I
T
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
41.57
12%
-67
- C2 -
-
4BZ2
1
?
A:
[1-101]
-------------------------------------------------------------------------
V
E
F
K
R
M
C
S
G
K
-
F
S
I
D
K
---
E
--------------
M
A
---
E
T
Q
H
G
T
T
V
V
K
V
K
-------
Y
E
G
A
G
-------
A
P
-
C
K
V
P
-
I
E
I
R
D
-
V
N
K
E
K
V
V
------
G
R
---------------
I
I
------------------------------------------
S
------
S
T
P
F
A
E
Y
T
-
N
S
------
V
T
N
I
-----
E
L
E
----
P
P
F
---
G
D
S
Y
I
V
--------
I
G
V
G
D
S
A
L
T
L
H
W
F
R
K
H
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
41.54
24%
11
- C2 -
-
5MUW
2
P4_BPPH6
A:
[2-276]
--------------------------------------------------------P
I
V
V
T
Q
A
H
I
D
R
V
--
G
I
A
A
D
L
L
D
A
S
P
V
S
-
L
Q
V
L
G
R
P
T
A
--------------
I
N
---
T
V
V
I
K
T
Y
I
A
A
V
M
-------
E
L
A
S
K
--------------------------
Q
G
------
G
S
---------------
L
A
G
V
D
---
I
R
---
P
S
V
L
---
L
K
----
D
-----------------
T
------
A
I
F
T
A
D
V
E
-
S
D
------
V
D
-----------------------------------
V
L
D
T
G
I
Y
S
V
P
G
L
A
R
K
P
V
THRWPSEGI
Y
S
G
V
T
A
LMGATGSG
K
S
I
T
L
N
EKLRPD
V
L
I
R
W
GEVAEAYDELDT
A
V
H
I
S
T
L
D
E
M
L
I
V
C
I
G
LGALGFNVAVDSV
R
P
L
L
F
R
LKGAASAGGIVAV
F
Y
S
L
L
T
D
I
S
N
L
F
T
Q
Y
D
C
S
V
V
M
VVNPMVDAEK
I
E
Y
V
F
G
Q
V
M
A
S
T
V
G
A
I
L
C
A
DGNVS
R
T
M
F
RTNKGRIFN
17
PsiBlast_PDB
41.17
24%
-34
- C5 -
-
4KYW
2
T2D1_STRPN
A:
[5-64]
------------------------------------------------------------------
E
L
--
H
F
N
L
E
L
V
E
T
Y
K
S
N
-
S
Q
K
A
R
---
I
--------------
L
T
---
E
D
--------
W
V
-------
Y
R
Q
S
Y
-------
C
P
N
C
G
N
N
P
L
N
H
F
E
-
N
N
R
P
V
A
----------------------------------------------------------
D
F
---
Y
C
N
H
C
S
------
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
39.23
22%
-32
- C2 -
-
4RNZ
3
?
A:
[1-369]
M
E
R
L
V
W
D
KLT
L
L
G
F
L
E
K
N
HIPQ
K
L
Y
Y
N
LS
S
Q
D
K
E
L
S
A
E
IQSN
V
T
Y
Y
T
L
R
D
ANNTLI
Q
A
L
I
P
ISQ
D
L
Q
I
--
H
I
Y
K
K
G
---
E
D
Y
F
-
L
D
F
I
P
---
I
--------------
I
F
---
T
R
K
E
K
T
L
L
L
S
L
Q
TS
P
Y
Q
D
I
I
K
A
T
N
-------
D
P
L
L
A
N
Q
-
L
M
N
A
--
Y
K
K
S
--
V
------
P
F
---------------
K
R
L
V
K
---
N
D
---
K
I
A
I
---
V
Y
----
T
R
------
D
Y
R
VG
Q
A
F
G
Q
P
------
T
I
K
M
A
M
V
S
S
R
S
------
N
Q
Y
Y
-----
L
F
S
H
SNG
H
Y
Y
D
SK
A
Q
E
V
A
G
--------
F
L
L
E
T
P
V
K
--
Y
T
R
I
S
S
P
F
SYGRFHRPHY
G
V
D
Y
A
A
K
HGS
L
I
H
S
A
S
D
G
R
V
G
F
M
G
V
K
AGYG
K
V
V
E
I
H
L
NE
L
R
L
V
Y
A
HMSAFANGLKKG
S
F
V
K
KGQII
G
R
V
G
STG
P
H
L
H
F
G
V
Y
K
NSRPINPLGYIRT
A
K
S
K
L
H
G
K
Q
R
E
V
F
L
E
K
A
Q
R
S
K
Q
K
L
E
E
L
L
K
T
H
SFEKNSFYLLEGFLEHHHH-------------