@TOME V2.3
(Mar 2018)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : spr0039: (2017-12-14 )
MRNIGQAGKILADSGYQGLMKIYPQAQTPRKSSKLKPLTVEDKACNHALSKERSKVENIFAKVKTFKMFSTTYRNHRKRFGLRMNLIAGIINHELGF
Atome Classification :
(20 SA)
---------------------------------------------------------......--...10....----------------------------------------....--------20......-------..30...---.....40....--....50.......-..60..-----..---....------70--........80...------..-...90......-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
---------------------------------------------------------MRNIGQ--AG
K
I
LADSG----------------------------------------
Y
Q
G
L
--------
M
K
IYPQAQ-------TPRKSSK---LK
P
L
T
VE
D
K
AC--
N
H
A
L
S
-
K
E
R
S
K
V
E
-
N
I
F
A
K
V
-----
K
T
---
F
K
M
F
------
S
T
--
T
Y
R
N
H
R
K
R
FG
L
R
M
------
N
L
-
I
A
G
I
I
NHELGF-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
60.49
17%
69
* C4 *
-
3U4V
-
?
A:
[199-314]
---------------------------------------------------------
N
F
N
I
G
S
--
L
S
D
Q
L
S
K
Q
T
L
L
ISQLQVGKNRFS
F
K
------------------------
F
E
G
R
--------
V
V
Y
K
S
S
T
F
-------
Q
N
Q
Q
D
S
K
---
Y
F
F
I
T
A
Q
D
A
N
---
N
Q
E
I
N
M
S
F
W
Q
K
V
D
-
Q
S
Y
Q
T
L
-----
K
V
G
Q
Y
Y
Y
F
I
------
G
G
--
E
V
K
Q
F
K
N
N
L
E
L
K
F
------
K
F
G
D
Y
Q
I
I
P
K
E
T
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
55.57
14%
38
- C5 -
-
2MN2
-
?
A:
[1-122]
---------------------------------------------------MDEYSP
K
R
H
D
V
A
--
Q
L
K
F
L
C
E
S
L
----------------------------------------
Y
D
E
G
--------
I
A
T
L
G
D
S
H
HGWVNDP
T
S
A
V
N
L
Q
---
L
N
D
L
I
E
H
I
A
S
F
--
V
M
S
F
K
-
I
K
Y
P
D
D
G
-
D
L
S
E
L
V
E
E
Y
L
D
D
T
---
Y
T
L
F
------
S
S
YG
I
N
D
P
E
L
Q
R
W
Q
K
T
K
------
E
R
-
L
F
R
L
F
S
G
E
Y
I
S
T
L
M
KT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
52.93
17%
51
- C4 -
-
5KPE
-
?
A:
[1-120]
---------------------------------------------------------
M
Q
D
I
V
E
--
A
A
K
Q
A
A
I
A
I
----------------------------------------
F
Q
L
W
K
NPTD
P
E
A
Q
E
L
L
N
K
I
L
-------
S
P
D
V
L
D
Q
---
V
R
E
H
A
R
E
L
Q
K
Q
--
G
I
H
F
E
-
V
K
R
V
E
V
T
-
T
D
G
N
T
V
-----
N
V
---
T
V
E
L
E
E
TTGG
T
T
--
T
N
T
T
Y
E
L
R
F
E
V
D
G
------
D
T
-
I
R
R
V
T
V
T
Q
N
G
G
SLEHHHHHH--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
52.81
21%
90
* C5 *
-
2MQ8
-
?
A:
[1-112]
-------------------------------------------M
L
T
V
E
V
E
V
K
I
T
A
DD
E
N
K
A
E
E
--
I
V
K
R
V
I
D
E
V
----------------------------------------
E
R
E
V
--------
Q
K
Q
Y
P
N
A
T
-------
I
T
R
T
L
T
R
D
DG
T
V
E
L
R
I
K
V
K
A
D
T
E
E
K
A
K
S
-
I
I
K
L
I
E
E
-
R
I
E
E
E
L
-----
R
K
---
R
D
P
N
------
A
T
--
I
T
R
T
V
R
T
E
V
G
S
S
W
------
S
L
-
E
----
H
H
H
H
H
H
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
51.25
22%
-10
- C2 -
-
2GHF
-
ZHX1_HUMAN
A:
[1-102]
---------------------------------------------------------
M
A
H
H
H
H
--
H
H
N
Q
Q
N
K
K
V
----------------------------------------
E
G
G
Y
--------
E
C
K
Y
C
T
F
Q
-------
T
P
--
D
L
N
---
M
F
T
F
H
V
D
S
E
H
P
--
N
V
V
L
N
-
S
S
Y
V
C
V
E
C
N
F
L
T
K
R
Y
----
D
A
---
L
S
E
H
------
N
L
--
K
Y
H
P
G
E
E
N
F
K
L
T
M
V
K
R
NNQ
T
I
-
F
E
Q
T
I
N
-
D
L
T
F
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
46.61
25%
-324
* C7 *
-
1OGD
1
RBSD_BACSU
B:
[22-33]
-----------------------------------------------------------------
D
K
I
V
I
A
D
A
G
----------------------------------------
L
P
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
45.07
25%
-289
- C7 -
-
1OGC
-
RBSD_BACSU
B:
[22-33]
-----------------------------------------------------------------
D
K
I
V
I
A
D
A
G
----------------------------------------
L
P
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
43.10
20%
138
- C5 -
-
2N2U
-
?
A:
[1-77]
---------------------------------------------------------
M
V
D
L
K
I
D
V
S
D
D
E
E
A
E
K
I
----------------------------------------
I
R
E
I
--------
R
E
Q
W
P
K
A
T
-------
V
T
R
T
N
G
D
---
I
K
-
L
D
A
Q
T
---------
E
-
K
E
A
E
K
M
E
-
K
A
V
K
K
V
-----
K
P
---
N
A
T
I
------
R
K
--
T
G
G
S
L
E
H
H
H
H
H
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
38.32
13%
92
- C3 -
-
4R1D
-
?
A:
[45-561]
QTA
P
L
P
V
I
F
I
P
G
IMG
T
N
L
R
NKADKSEVWRPPNGLWPMDD
L
F
A
S
I
G
A
L
W
T
WAWRG
P
K
A
R
Q
E
L
L
K
--
A
E
Q
V
E
V
D
D
------------------------------------------
Q
G
T
--------
I
D
V
G
Q
S
G
L
-------
S
E
E
A
A
R
L
---
R
G
W
G
K
V
M
R
S
A
Y
--
N
P
V
M
G
-
L
M
E
R
R
L
D
-
N
I
V
S
R
R
-----
E
L
---
Q
A
W
W
------
N
D
--
E
A
L
S
P
P
G
D
Q
G
E
E
Q
------
G
K
-
V
G
P
I
D
E
E
E
L
L
R
A
S
R
Y
Q
F
D
V
W
C
AGYNWLQS
N
R
Q
S
A
L
D
V
R
D
Y
I
E
N
T
V
L
P
F
Y
Q
K
E
C
GLD
P
E
Q
M
R
R
M
K
V
I
L
V
T
H
S
M
G
G
L
V
A
R
A
L
T
Q
L
H
GYERVL
G
V
V
H
G
VQPATGSS
T
I
Y
H
H
M
R
CGYEGIAQVVLGRN
A
G
E
V
T
A
I
VANS
A
G
A
L
E
L
APSAEYREGRPW
L
F
L
C
D
AQG
Q
V
L
K
D
IDGKPRAYPQNQDPYEEIYKNTTWYGLVPEQNSQYLDMSDKKEGLRVG
P
R
D
N
F
E
D
L
I
D
S
I
A
N
F
H
G
E
L
S
A
A
GYHSE
T
Y
A
H
Y
G
A
D
DSRHSWRDL
I
W
K
G
D
PTPLETPG
A
T
L
N
D
DENGTYNSWFRRG
L
P
T
I
V
Q
G
PLETGNPLDASGSGGDETVP
T
D
S
G
Q
A
PALAGVK
A
S
F
R
H
G
SKGKGQANTKRGYEHQESYND
A
R
A
Q
W
A
A
L
Y
G
V
I
K
I
T
Q
L
ADW
6
HHSearch
36.79
22%
-252
- C6 -
-
5L85
-
B:
[4-21]
---------------------------------------------------------------------------------------------------------------------------------------------------------------
H
E
R
--
N
V
I
L
Q
-
C
V
R
Y
I
I
K
-
K
D
F
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
36.62
15%
34
- C5 -
-
2G0U
-
?
A:
[1-92]
---------------------------------------------------------
M
S
N
--
P
--
P
T
P
L
L
A
D
Y
E
----------------------------------------
W
S
G
Y
--------
L
T
G
I
G
R
A
F
-------
D
D
G
V
-------
K
D
L
N
K
Q
L
Q
D
A
--
Q
A
N
L
T
-
K
N
P
S
D
P
T
-
A
L
A
N
Y
Q
-----
M
I
---
M
S
E
Y
------
N
L
--
Y
R
N
A
Q
S
S
A
V
K
S
M
K
------
D
I
-
D
S
S
I
L
E
H
H
H
H
H
H----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
35.78
50%
-171
- C6 -
-
3LYU
-
?
A:
[100-119]
------------------------------------------------------------------
G
K
I
L
A
I
G
A
----------------------------------------
Y
T
G
I
--------
V
E
V
Y
P
I
A
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
35.62
50%
-163
- C6 -
-
3LRX
-
?
A:
[100-119]
------------------------------------------------------------------
G
K
I
L
A
I
G
A
----------------------------------------
Y
T
G
I
--------
V
E
V
Y
P
I
A
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
32.86
13%
87
- C4 -
-
4EPC
-
ATL_STAEP
A:
[696-847]
----------------------------------------------------N
N
Q
L
T
V
T
N
N
S
G
--
V
A
Q
I
N
A
N
S
G
LYTTVYDT
K
G
K
T
T
NQIQ
R
T
L
S
V
TAATLGDF
Y
L
V
G
DYNTGT
N
Y
G
W
--------
V
Q
D
E
V
I
Y
N
-------
T
A
S
P
V
K
I
---
N
Q
T
Y
N
V
P
G
V
L
H
--
T
V
P
W
G
-
T
Y
N
Q
V
A
G
-
T
V
-
S
G
K
-----
G
D
---
Q
T
F
K
------
A
T
--
Q
Q
Q
I
D
A
T
Y
L
Y
G
T
V
------
N
G
-
K
S
G
W
I
S
Y
Y
L
T
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
32.82
17%
76
- C6 -
-
1MUS
1
TN5P_ECOLX
A:
[317-357]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
I
Y
-
T
H
R
W
R
I
E
-
E
F
H
K
A
W
-----
K
T
G--
A
G
A
E
------
R
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
32.15
29%
-94
- C1 -
-
1H9H
-
ITR2_ECBEL
I:
[16-29]
--------------------------------------------------------------
L
--
A
G
C
V
C
G
P
N
G
----------------------------------------
F
C
G
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
31.88
50%
-126
- C6 -
-
5VJ7
1
?
B:
[100-120]
------------------------------------------------------------------
G
K
I
L
A
I
G
A
----------------------------------------
Y
T
G
I
--------
V
E
V
Y
P
I
A
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
29.12
17%
100
- C6 -
-
4DM0
-
TN5P_ECOLX
A:
[317-355]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
I
Y
-
T
H
R
W
R
I
E
-
E
F
H
K
A
W
-----
K
T
G--
A
G
A
E
------
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
16.83
13%
-
- C6 -
-
2RJI
-
?
A:
[45-59]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
R
------
N
L
-
C
C
A
V
S
D
Y
C
M
S
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
16.73
13%
-
* C6 *
-
2RJI
-
?
B:
[45-59]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
R
------
N
L
-
C
C
A
V
S
D
Y
C
M
S
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------