@TOME V2.3
(Mar 2018)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : spr0040: (2017-12-14 )
MNTKKMSQFEIMDTEMLACVEGGGCNWGDFAKAGVGGGAVRGLQLGIKTRTWQGAATGAAGGAILGGVAYAATCWW
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10...-------.....20........30...----------.....------40........50----------.........60....---....70..-...-----------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MNTKKM
S
Q
F
EIMD
T
-------
E
M
L
A
C
VEGGGCN
W
G
D
F
A
KAG----------VGGGA------
V
R
G
L
Q
L
G
I
KT
R
-----------
T
WQGAATGAA
G
G
A
I
L
---
G
G
V
A
Y
A
A
T-CWW-----------------------------------------------------------------------------------------------------------
6
Fugue
79.95
19%
-
- C5 -
-
4MT7
-
ARHG9_RAT
A:
[45-381]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Q
N
R
D
Q
M
R
A
N
V
I
N
E
I
M
S
T
E
R
H
Y
I
K
H
L
K
D
I
C
E
G
Y
L
K
Q
C
R
K
R
RDMFS
D
E
Q
L
K
V
I
FGN
I
E
D
I
Y
R
F
Q
M
G
F
V
R
D
L
E
K
Q
YNNDDPHLSEI
G
P
C
F
L
E
H
Q
DGFW
I
Y
S
E
Y
C
N
N
H
L
D
A
C
M
E
L
S
K
L
M
K
D
S
R
Y
Q
H
F
F
E
A
C
R
L
L
Q
QMIDIA
I
D
G
F
L
L
T
P
V
Q
K
I
C
K
Y
P
L
Q
L
A
-------
E
L
L
K
Y
T
A
Q
---
D
H
S
D
Y
R
Y
V
A
----------
A
A
L
A
V
------
M
R
N
V
T
Q
Q
I
N
E
R
K
RRLEN
I
D
K
I
A
Q
W
Q
A
S
V
L
D
W
E
G
D
D
I
L
DRS
S
E
L
I
Y
T
G
E
-
M
A
W
I
YQPY
G
R
N
Q
Q
R
V
F
F
L
F
DH
Q
M
V
L
C
K
K
DLIRRD
I
L
Y
Y
KGRIDMDK
Y
E
V
I
D
I
E
D
G
RDDDF
N
V
S
M
K
N
A
F
K
L
H
N
KETE
E
V
H
L
F
F
A
KK
L
E
E
K
I
R
W
L
R
A
F
R
E
E
R
K
M
V
Q
E
D
E
K
I
G
2
PsiBlast_PDB
40.96
44%
23
- C4 -
-
4AAH
1
DHM1_METME
A:
[216-242]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
F
G
L
G
T
K
-----------
T
W
E
G
D
A
W
K
I
G
G
G
T
N
W
---
G
W
Y
A
Y
------------------------------------------------------------------------------------------------------------------
15
Fugue
39.97
26%
25
- C5 -
-
5J90
5
?
A:
[27-508]
NHI
K
G
G
F
A
P
M
F
N
N
IQVLTP
E
W
V
Y
Q
L
Q
QGLN
S
D
I
W
S
GYMATPTGFESGVNNTTYALL
D
N
W
N
G
F
I
W
D
Y
G
Y
K
NV
M
F
N
A
Y
D
I
A
N
K
S
KGKY
D
Q
F
Y
A
L
S
L
I
L
K
V
E
G
M
H
R
M
T
D
T
FGPIIYSKFGSNDATI
A
Y
D
S
Q
E
E
V
Y
T
Q
M
F
A
E
L
D
T
A
V
A
E
L
T
K
R
I
D
A
GEASTFESTDMTGYKGK
Y
E
S
W
V
R
F
A
N
T
L
R
L
R
L
A
M
R
I
VKVK
P
A
L
A
K
T
E
A
E
K
A
V
A
QKFGVMLVNDD
S
F
K
I
VSPVYTN
P
I
A
T
I
S
SSWLDIRMS
A
D
M
E
S
I
M
K
G
Y
QDPRIASYFDTSKQFPN
E
Y
K
G
V
R
T
GIAISGKSDHQDFSGIGAVVRSKEIYLMN
A
A
E
A
Y
F
L
R
A
E
G
A
L
R
GWNMGGT
A
Q
E
L
Y
E
A
G
I
K
A
S
F
D
Q
R
GVSG
A
A
G
Y
I
A
DNTK
T
A
A
A
Y
V
DPNFPENNSDPVNNVTVAWDA
A
A
T
N
E
V
K
L
Q
K
I
I
T
Q
-------
K
W
I
A
G
F
P
E
G
Q
E
A
W
S
D
Y
R
R
T
G
YP
K
L
F
P
V
LKN
Y
S
G
G
A
ITTEFG
V
R
R
I
N
F
-
V
Q
S
E
-----------
K
A
G
N
S
G
G
V
A
T
G
V
S
K
L
---
G
G
P
D
N
G
G
T
R
V
W
W
DVNAPNF----------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
39.83
44%
19
- C4 -
-
2AD7
1
DHM1_METME
A:
[216-242]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
F
G
L
G
T
K
-----------
T
W
E
G
D
A
W
K
I
G
G
G
T
N
W
---
G
W
Y
A
Y
------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
39.34
44%
19
- C4 -
-
2AD6
1
DHM1_METME
A:
[216-242]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
F
G
L
G
T
K
-----------
T
W
E
G
D
A
W
K
I
G
G
G
T
N
W
---
G
W
Y
A
Y
------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
38.88
44%
28
- C4 -
-
2AD8
1
DHM1_METME
A:
[216-242]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
F
G
L
G
T
K
-----------
T
W
E
G
D
A
W
K
I
G
G
G
T
N
W
---
G
W
Y
A
Y
------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
38.51
44%
32
- C4 -
-
1G72
1
DHM1_METME
A:
[218-244]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
F
G
L
G
T
K
-----------
T
W
E
G
D
A
W
K
I
G
G
G
T
N
W
---
G
W
Y
A
Y
------------------------------------------------------------------------------------------------------------------
14
Fugue
37.12
12%
33
- C5 -
-
2EFV
-
Y366_METJA
A:
[6-87]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------F
M
K
E
K
K
R
A
T
F
Y
L
Y
K
N
ID
G
R
K
L
R
Y
L
L
H
K
L
E
N
V
E
N
V
D
I
D
T
L
R
R
A
----------
I
E
A
E
--------
K
K
Y
K
R
S
I
T
L
T
-----------
E
E
E
E
V
I
I
Q
R
L
G
K
S
A
N
---
L
L
L
N
C
E
L
V
-
K
L
D
-----------------------------------------------------------------------------------------------------------
10
Fugue
36.23
28%
-222
- C6 -
-
1RPB
-
?
?:
[1-21]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
L
G
I
G
S
C
N
D
F
---
A
G
C
G
Y
A
V
V
-
C
F
W
-----------------------------------------------------------------------------------------------------------
9
Fugue
36.23
28%
-222
* C6 *
-
1RPB
-
3CP1_STRS9
A:
[1-21]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
L
G
I
G
S
C
N
D
F
---
A
G
C
G
Y
A
V
V
-
C
F
W
-----------------------------------------------------------------------------------------------------------
12
Fugue
35.95
9%
70
- C5 -
-
5J0K
-
?
A:
[6-79]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
R
T
E
I
I
R
E
L
E
R
S
L
R
E
Q
E
-------
E
L
A
K
R
L
K
E
L
L
R
E
L
E
R
L
Q
R
E
G
----------
S
S
D
E
D
------
V
R
E
L
L
R
E
I
K
E
L
-----------
V
E
E
I
E
K
L
A
R
E
Q
K
Y
L
V
---
E
E
L
K
R
Q
-----------------------------------------------------------------------------------------------------------------
13
Fugue
35.52
24%
-156
- C- -
-
1G39
-
HNF1A_MOUSE
C:
[1-29]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
S
K
L
S
Q
L
Q
T
-------
E
L
L
A
A
L
L
E
S
G
L
S
K
E
A
L
I
Q
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
HHSearch
35.07
12%
-189
- C5 -
-
2AIV
-
A:
[11-27]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
L
D
T
L
S
S
Y
S
L
-------
L
Q
L
R
K
V
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
34.72
12%
-163
- C5 -
-
5HB5
-
B:
[12-28]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
A
D
D
I
R
A
M
N
R
-------
M
Q
R
Q
R
V
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
34.52
31%
-264
- C5 -
-
5CX3
-
FYCO1_HUMAN
F:
[7-19]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
F
D
I
I
T
D
-------
E
E
L
C
Q
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
33.98
31%
-266
- C5 -
-
5CX3
-
FYCO1_HUMAN
G:
[7-19]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
F
D
I
I
T
D
-------
E
E
L
C
Q
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
33.67
12%
-219
- C5 -
-
3PBP
-
K:
[10-26]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
L
D
T
L
S
S
Y
S
L
-------
L
Q
L
R
K
V
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
33.11
17%
-185
- C5 -
-
5HB6
-
B:
[9-27]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
A
D
D
I
R
A
M
N
R
-------
M
Q
R
Q
R
V
V
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
Fugue
31.73
45%
-151
- C1 -
-
1B8H
-
D:
[1-11]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
K
A
S
L
F
D
M
F
D
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
31.35
6%
-319
- C5 -
-
2D0S
1
?
A:
[56-72]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
M
P
P
H
P
Q
V
A
E
-------
A
D
I
E
K
I
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------