@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : spr0055: (2017-12-14 )
MIQIIVNTFIEKDKTGAVVEVLYASADQDKVQAKYEELAAQYPENYLAIYDVPLDTDLNTLDHYPSVFIEKEEFE
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...----......10-..-......20-----.--.......-----------30.......---.40.---.......50..---......60..-......70....-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
Q
----
I
I
V
N
T
F
IE-KD-KTG
A
V
V
E
V
-----L--YASAD
Q
D
-----------
K
V
Q
A
K
Y
E
E
L
---
A
A
QY---PE
N
Y
L
A
I
Y
DVP---LDTDL
N
T
L
DH-YPS
V
F
I
EKEEFE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
53.90
24%
-207
- C10 -
-
1RCX
-
RBS1_SPIOL
C:
[74-102]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
--
F
G
C
T
D
P
A
-----------
Q
V
L
N
E
L
E
E
C
---
K
K
E
Y
---
P
N
A
F
I
R
I
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
52.70
46%
-271
- C10 -
-
3LOV
-
?
A:
[413-438]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
T
V
G
H
A
D
-----------
R
I
Q
R
V
R
E
E
V
---
L
A
Q
Y
---
P
G
I
Y
L
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
51.67
28%
-178
- C10 -
-
5IU0
1
?
J:
[129-157]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
--
F
G
C
T
D
S
A
-----------
Q
V
L
K
E
V
E
E
C
---
K
K
E
Y
---
P
G
A
F
I
R
I
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
50.19
30%
45
- C7 -
-
2KSS
-
CARS_MYXXA
A:
[21-106]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
Q
DPS
L
I
I
C
H
D
V
D
G
A
P
V
-
R
I
G
A
K
V
K
V
-----
V
--
P
H
S
E
D
G
T
ISQRFLG
Q
T
G
I
V
V
G
L
V
F
D
D
P
---
A
T
Q
Y
---
P
D
D
P
L
I
Q
V
L
V
E
------
G
L
G
E
D
L
F
-
F
P
E
E
L
E
L
A
P
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
Fugue
48.93
14%
40
- C6 -
-
2LU2
-
?
A:
[58-138]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------E
M
T
R
----
L
M
V
T
------
E
-
K
Q
E
S
--
K
N
-----
F
--
S
K
M
A
K
S
Q
-----------
S
F
S
T
R
I
E
E
L
G
G
S
I
S
F
L
---
T
E
T
G
V
T
M
I
E
L
P
---
K
T
V
S
E
H
D
M
D
Q
-
L
L
H
D
I
L
A
A
G
G
V
V
G
L
DSEVKLA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
45.50
26%
56
- C8 -
-
5G0J
1
?
A:
[17-772]
VQGKS
K
A
T
G
T
G
L
V
Y
V
DAFTRFHCLWDASHPEC
P
A
R
V
S
T
V
M
E
M
L
E
T
E
GLLGRCV
Q
V
E
A
R
A
V
T
E
D
E
L
L
LVHT
K
E
Y
V
E
L
M
K
S
TQNMT
E
E
E
L
K
T
L
A
E
K
Y
DS
V
Y
L
H
PG
F
F
S
S
A
C
L
S
V
G
S
V
L
Q
L
V
D
K
V
M
T
SQLR
N
G
F
S
INRPPGHHAQADKMNGFCMFN
N
L
A
I
A
A
R
Y
A
Q
K
R
HRVQ
R
V
L
I
V
D
WDVHHG
Q
G
I
Q
Y
I
F
E
EDPS
V
L
Y
F
S
V
H
R
Y
EDGSFWPHLKESDSSSVGSGAGQGY
N
I
N
L
P
W
NKVGME
S
G
D
Y
I
T
A
F
Q
QL
L
L
P
V
A
Y
E
F
QPQ
L
V
L
V
AAGFDAVIGDPKGG
M
Q
V
S
P
E
C
F
S
I
L
T
H
M
L
K
G
V
A
Q
GR
L
V
L
A
L
E
G
GYN
L
Q
S
T
A
E
G
V
C
A
S
M
R
S
L
L
GDPCPHLPSSGAPC
E
S
A
L
K
S
I
S
K
T
I
S
D
L
YPFWKSLQTFEGGPLSEVSP
L
P
A
P
V
C
A
E
VKVSS
P
I
T
G
L
V
Y
D
QRMMLHHNMWDSHHPE
L
P
Q
----
R
I
S
R
I
F
S
R
-
H
E
-
E
L
R
L
L
S
R
C
-----
H
--
R
I
P
A
R
L
---------------
A
T
E
E
E
L
---
A
L
C
H
---
S
S
K
H
I
S
I
I
K
S
S
EHM
K
P
R
D
L
N
R
L
G
D
E
Y
N
S
I
F
I
S
N
E
S
Y
T
C
A
L
L
A
A
G
S
C
F
N
S
A
Q
A
I
L
T
GQVR
N
A
V
A
IVRPPGHHAEKDTACGFCFFN
T
A
A
L
T
A
R
Y
A
Q
S
I
T
RES
L
R
V
L
I
V
D
WDVHHG
N
G
T
Q
H
I
F
EEDDS
V
L
Y
I
S
L
H
RYEDGAFFPNSEDANYDKVGLGKGRGY
N
V
N
IPWNGGKMG
D
P
E
Y
M
A
A
F
H
H
L
V
M
P
I
A
R
E
F
APE
L
V
L
V
SAGFDAARGDPLGG
F
Q
V
T
P
E
G
Y
A
H
L
T
H
Q
L
MSLAAGR
V
L
I
I
L
E
G
GYN
L
T
S
I
S
E
S
M
S
M
C
T
S
M
L
L
GDSPPSLDHLTPLK
T
S
A
T
V
S
I
N
N
V
L
R
A
H
APFWSSLRVNIPESLRLSL
21
HHSearch
44.63
11%
-256
- C10 -
-
3ZXW
-
?
D:
[61-88]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
N
C
T
N
A
Q
-----------
D
V
L
N
E
V
Q
Q
C
---
R
S
E
Y
---
P
N
C
F
I
R
V
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
44.22
16%
76
- C8 -
-
2JXT
-
RL18A_METTH
A:
[1-86]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKMK
T
K
I
F
----
R
V
K
G
K
F
L
M
-
G
D
-
K
L
Q
P
F
T
K
E
-----
L
--
N
A
I
R
E
E
E
-----------
I
Y
E
R
L
Y
S
E
F
---
G
S
K
H
RV-
P
R
S
K
V
K
I
E
E
I
E
---
E
I
S
P
E
E
V
Q
D
P
-
V
V
K
A
L
V
Q
R
L
E
H
H
HHHH-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
44.05
21%
-239
- C10 -
-
1RBL
-
RBS_SYNP6
K:
[62-89]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
A
C
A
A
P
Q
-----------
Q
V
L
D
E
V
R
E
C
---
R
S
E
Y
---
G
D
C
Y
I
R
V
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
43.18
19%
-134
- C10 -
-
1SVD
1
RBS_HALNC
M:
[52-91]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
N
Q
Y
W
Y
M
WK---
L
PF
F
G
E
Q
N
V
D
-----------
N
V
L
A
E
I
E
A
C
---
R
S
A
Y
---
P
T
H
Q
V
K
L
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
40.25
17%
-19
- C10 -
-
5UEB
3
?
B:
[79-127]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
I
N
I
-----
V
--
V
L
D
H
F
P
K
-----------
D
L
L
A
A
I
E
E
H
---
S
G
K
I
R
K
N
G
E
N
Y
-
L
S
V
N
F
P
---
P
K
K
Y
N
S
D
L
K
G
-
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
39.50
17%
-18
- C10 -
-
5UEB
1
?
A:
[79-127]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
I
N
I
-----
V
--
V
L
D
H
F
P
K
-----------
D
L
L
A
A
I
E
E
H
---
S
G
K
I
R
K
N
G
E
N
Y
-
L
S
V
N
F
P
---
P
K
K
Y
N
S
D
L
K
G
-
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
38.95
21%
-60
- C10 -
-
2JNA
-
?
A:
[36-79]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
K
V
G
T
I
N
V
S
Q
S
G
G
Q
--
I
S
S
P
S
D
-------------
L
R
E
K
L
S
E
L
---
A
D
A
K
---
G
G
K
Y
Y
H
I
I
A
A
R
---
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
38.16
19%
-
- C- -
-
5EF9
-
PB2_INBLE
A:
[383-420]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
K
----
L
L
I
N
S
A
K
K
-
E
D
M
K
D
L
I
I
L
C
M
-----
V
--
F
S
-
Q
D
T
R
-----------
M
F
Q
G
V
R
G
E
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
37.58
42%
-458
- C9 -
-
4F87
-
?
B:
[53-64]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
P
S
I
N
I
S
K
S
D
V
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
37.03
27%
-
* C10 *
-
1P9I
-
?
A:
[3-31]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
L
N
A
L
L
-----
A
--
S
L
E
A
E
N
K
-----------
Q
L
K
A
K
V
E
E
L
---
L
A
K
V
---
G
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
35.76
78%
-
- C2 -
-
5GN0
-
?
G:
[3-9]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
T
D
L
E
A
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
35.69
24%
53
- C10 -
-
1WDD
-
RBS1_ORYSJ
S:
[75-101]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
--
F
G
C
T
D
A
T
-----------
Q
V
L
K
E
L
E
E
A
---
K
K
A
Y
---
P
D
A
F
V
R
I
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
35.11
24%
45
- C5 -
-
1NTM
-
?
I:
[1-57]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
S
----
V
--------
A
A
-
R
S
G
P
F
A
P
V
-----
L
----
S
A
T
S
R
-----------
G
V
A
G
A
L
R
P
L
---
V
Q
A
------------
A
V
P
---
A
T
S
E
S
P
V
L
D
L
-
K
R
S
V
L
C
R
E
S
L
R
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
32.40
33%
-96
- C9 -
-
5J72
-
?
A:
[11-49]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
V
-----
V
--
L
G
S
K
S
N
A
-----------
S
V
K
F
K
-
E
K
L
---
N
A
D
S
---
I
T
L
N
F
M
C
Y
D
M
P
---
L
E
A
T
L
N
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------