@TOME V2.3
(Mar 2018)
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : spr0061: (2017-12-14 )
MIQWWQILLLTLYSAYQICDELTIVSSAGSPVFAGFITGLIMGDVTTGLLIGGNLQLFVLGVGTFGGASRIDATSGAVLATAFSVSQGIDAPLAITTIAVPVAALLTYFDVLGRMTTTFFAHRVDAAIERFDYKGIERNYLLGAIPWALSRALPVFFALAFGGAFVQSVVDFVEAYKWVADGLTLAGRMLPGLGFAILLRYLPVKRNLHYLAMGFGLTAMLTVLYSYVTGLGGAVAGIVGTLPAEVAQKIGFVNNFKGLSMIGISIVGIFLAVLHFKNSQKVAVAAPSTPSESGEIEDDEF
Atome Classification :
(20 SA)
----------------------------------------------------------------------------.........-10--------...----------------..-...20.----.---.---------------...-..-----30....--------.-------..----.40-......--..50...------.-.-------...60.....-------------....70....-....80-.--....------...90-......-...100---.........110-...----------....120........-130..-----------------....--.140..-.....150---...-.--...-..160-.......-..-----------170...-...--.180----..------...-...190.----.--.--.---...200......---.------210....---...-----220----...--...-..230.------..--------------..--------..240------------.........------250------....-...-------.-260.-...-------...270-.....-..280-...-......290........300----------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------M
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---
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---------------VSS-AG-----S
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-
M
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DVT
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--
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IGGN------
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-------
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F
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-
G
VGTF-------------GGASRIDATS-G
A
V
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A
--
F
SVS------QGID--APL
A
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-----
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FDYK-----------------GIER--N
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---
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M
-
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----
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A
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K------IG-------FVNN-FKG-------
L
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HFK-NS
Q
---
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A
-
V
AAPSTPS-ESGEIEDDEF-----------------------------
24
Fugue
70.23
19%
-74
- C2 -
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4RGL
1
?
A:
[8-335]
----------------------------------------------------------------------------
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KGQR-------------------------
27
Fugue
64.64
15%
-25
- C2 -
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5DBK
-
?
A:
[5-359]
----------------------------------------------------------------D
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25
Fugue
63.92
15%
-47
- C2 -
-
5K4B
-
EIF3D_NASVI
A:
[3-368]
--------------------------------------------------S
V
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R
PDWVTI
E
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C
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--------
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----
N
---
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PPQDDG
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---
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F
-----------------------------
19
Fugue
63.15
16%
-
- C2 -
-
3ZPJ
-
?
A:
[1-356]
----------------------------------------------------------------------------
M
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G
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CESPRFT
D
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GTIE------------------------
28
Fugue
61.00
10%
-32
- C2 -
-
1DIK
-
?
?:
[2-380]
-----------------------------------------------------AKWVYKFEEGNASMRNLLG
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------
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D
VVAGVRTPQPITQL
E
N
--------
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M
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--------------
D
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R
IEAKSLDQL-----------------
20
Fugue
57.90
13%
-
- C2 -
-
5E4V
-
NCAP_MEASF
A:
[12-427]
I
K
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P
GDSS
I
T
T
R
S
R
L
L
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I
G
NPDVS
G
P
K
L
T
G
A
L
I
G
I
L
S
LFVES
P
G
Q
L
I
Q
R
I
TDDPD
V
S
I
R
L
L
E
V
V
Q
S
D
Q
S
Q
S
G
L
T
-
F
A
--------
S
T
N
----------------
M
E
-
D
E
A
D
Q
Y
----
F
---
S
---------------
D
Q
S
-
R
F
-----
G
W
F
E
N
K
--------
E
-------
I
S
----
D
I
E
-
V
Q
D
P
E
G
F
N
M
I
L
G
T
I
L
------
A
-
Q
-------
I
W
V
L
-
L
A
K
A
V
-------------
T
A
P
D
T
-
A
A
D
S
-
E
L
R
R
W
I
-
K
--
Y
T
Q
Q
------
R
R
V
V
--
G
E
F
R
L
E
-
R
K
W
L
-----
D
V
V
R
N
R
I
A
E
D
----
L
S
----------
L
R
R
F
M
V
-
A
L
I
L
D
I
K
R
-
T
P
G
N
K
-----------------
P
R
I
A
--
E
M
I
C
D
I
-
D
T
Y
I
V
E
-----
A
G
L
-
A
--
S
F
I
L
T
I
K
---
F
G
---
I
E
-
T
M
-----------
Y
P
A
L
G
L
-
H
E
F
--
A
G
-
E
----
L
S
------
T
L
E
-
S
L
M
N
L
Y
Q
----
Q
--
M
--
G
---
E
T
A
P
Y
M
V
I
L
E
N
S
---
I
------
Q
N
K
F
S
------
A
G
-----
S
-
Y
----
P
L
L
--
W
S
Y
-
A
M
G
V
G
V
------
E
L
--------------
E
N
--------
S
M
G
GLNFGRSYFD
P
A
Y
F
R
L
G
Q
E
M
V
R
R
------
S
A
-------
G
K
V
S
-
S
T
L
-------
A
-
S
E
L
G
-
I
T
A
-------
E
D
A
R
L
V
-
S
E
I
A
M
-
H
T
T
---
E
D
K
-
I
S
R
M
A
E
E
Q
-
A
R
H
V
K
N
G
L
E
C
I
R
A
L
K
A
EPIG
S
L
A
I
E
E
A
M
A
A
W
S
E------
22
Fugue
54.03
13%
-23
- C2 -
-
2QGN
-
MIAA_BACHD
A:
[2-314]
--------------------------------------------------------------------------------------------------------------------------
K
E
----
K
---
L
---------------
V
A
I
-
V
G
------
P
T
A
V
G
--------
K
-------
T
K
----
T
S
V
M
L
A
K
R
L
N
--
G
E
V
I
S
G
D
------
S
M
Q
-------
V
Y
R
G
M
D
I
G
T
-----------------
A
K
I
T
A
E
E
M
D
G
V
P
H
H
----------------------------------------
L
I
D
I
K
D
P
S
-
E
S
F
----------
S
V
A
D
F
Q
-
D
L
A
T
P
L
I
T
-
E
I
H
E
R
-----------------
G
----------
R
-
L
P
F
L
V
G
-----
G
T
G
-
L
--
Y
V
N
-
A
V
I
---
H
Q
F
N
L
G
E
-
T
P
-----------
S
P
Y
N
L
V
M
I
G
L
---
T
M
E
----
R
D
------
V
L
Y
-
D
R
I
N
R
R
V
----
D
--
Q
M
-
V
-----
E
E
G
L
I
D
E
A
K
K
---
L
------
Y
D
R
G
I
R
D
---
C
Q
S
-----
V
-
Q
----
A
I
G
--
Y
K
E
M
Y
D
Y
L
D
G
NVT
L
E
E
A
I
--------------
D
T
--------
L
K
R
--------------
N
S
R
R
Y
A
K
R
Q
------
L
T
-------
W
F
R
N
-
K
A
N
-------
V
-
T
W
F
D
M
T
D
-------------------
V
-
D
F
D
---
K
K
I
M
E
I
H
N
F
I
A
G
-
K
L
E
E
K
S
K
--------------------------------
2
PsiBlast_PDB
53.68
28%
-129
- C3 -
-
2G4O
-
LEU3_MYCTU
A:
[207-323]
-------------------------------------------------------------------------------------------------------------------
A
Y
-
Q
H
V
D
A
A
----
T
---
I
---------------
H
M
I
-
T
D
-----
P
G
R
F
D
V
--------
I
-------
V
T
----
D
N
L
-
F
G
D
I
I
T
--------
D
------
L
-
A
-------
A
A
V
C
-
G
G
I
G
L
-------------
A
A
S
G
N
I
D
A
T
R
-
A
N
--
P
S
-
M
--
F
E
P
V
------
H
G
S
A
--
P
D
I
A
G
Q
-
G
I
A
D
-----
P
T
A
A
I
M
S
V
A
L
L
L
-
S
H
L
----------
G
E
H
D
A
A
-
A
R
V
D
R
A
V
E
A
H
L
A
T
R
-----------------
G
S
E
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
53.64
28%
-133
- C3 -
-
1W0D
-
LEU3_MYCTU
A:
[207-323]
-------------------------------------------------------------------------------------------------------------------
A
Y
-
Q
H
V
D
A
A
----
T
---
I
---------------
H
M
I
-
T
D
-----
P
G
R
F
D
V
--------
I
-------
V
T
----
D
N
L
-
F
G
D
I
I
T
--------
D
------
L
-
A
-------
A
A
V
C
-
G
G
I
G
L
-------------
A
A
S
G
N
I
D
A
T
R
-
A
N
--
P
S
-
M
--
F
E
P
V
------
H
G
S
A
--
P
D
I
A
G
Q
-
G
I
A
D
-----
P
T
A
A
I
M
S
V
A
L
L
L
-
S
H
L
----------
G
E
H
D
A
A
-
A
R
V
D
R
A
V
E
A
H
L
A
T
R
-----------------
G
S
E
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
49.59
16%
-52
- C2 -
-
1OCK
-
?
A:
[1-412]
-------------------------------------------------MIS
L
A
D
L
Q
R
R
I
E
T
GELS
P
N
A
A
I
A
Q
S
H
A
A
I
E
A
R
E
K
E
V
-
H
A
--------
F
V
R
HDKS
A
R
A
Q
ASGPLRG
I
A
V
-
G
I
K
D
I
I
----
D
TAN
M
---------------
P
T
E
-
M
G
-----
S
E
I
Y
R
G
--------
W
-------
Q
P
RSDA
P
V
V
-
M
M
L
K
R
A
--
G
A
T
I
I
G
K
------
T
-
T
-------
T
T
A
F
-
A
S
R
D
P
TATLNPHNTGHSP
G
G
S
S
--
S
G
S
A
-
A
A
V
G
A
G
-
M
--
I
P
L
A
------
L
G
T
Q
TG
G
S
V
I
R
P
-
A
A
Y
C
-----
G
T
A
A
I
K
P
S
F
R
M
L
-
P
T
V
GVKCYSWA
L
D
T
V
G
L
F
G
-
A
R
A
E
D
L
A
R
-
G
L
L
A
M
TGRSEFSGIVPAKA
P
R
I
G
V
V
R
--
Q
E
F
A
G
A
-
V
E
P
A
A
E
-----
Q
G
L
Q
A
--
A
I
K
-
A
A
E
---
R
A
G
A
S
V
Q
-
A
I
D
L
P
E
A
V
H
E
A
W
R
I
H
P
I
I
Q
-
D
F
E
--
A
H
-
R
----
A
L
------
A
W
E
-
F
S
E
H
H
D
E
----
I
--
A
--
P
---
M
L
R
A
S
L
D
A
T
V
G
L
T
P
K
E
------
Y
D
E
A
R
R
I
---
G
R
R
-----
G
-
R
----
R
E
L
--
G
E
V
-
F
E
G
V
D
V
------
L
L
--------------
T
Y
--------
S
A
P
--------------
G
T
A
P
A
K
A
L
A
STGDPR
Y
N
-------
R
L
W
T
-
L
M
G
-------
N
-
P
C
V
N
-
V
P
V
L
KVGG
L
P
I
G
V
Q
V
I
-
A
R
F
G
N
-
D
A
H
---
A
L
A
-
T
A
W
F
L
E
D
A
-
L
A
K
------------------------------------
10
PsiBlast_PDB
48.57
25%
-196
- C3 -
-
4LEP
1
?
A:
[371-485]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
F
-
I
Y
G
---
F
A
G
Q
F
A
V
-
N
G
-----------
K
T
S
S
W
V
-
M
I
W
--
G
Y
-
A
----
S
Y
------
S
L
G
-
E
L
L
V
S
G
L
----
G
--
L
--
A
---
M
I
A
R
Y
----------------------
G
F
---
M
M
G
-----
A
-
Y
----
F
V
A
--
S
G
I
-
S
Q
Y
L
G
G
------
V
V
--------------
A
N
--------
F
-
A
--------------
S
V
P
Q
D
L
V
D
P
------
L
Q
T
L
P
V
---
Y
T
N
L
-
F
N
K
-------
L
-
G
V
A
A
-
V
V
C
-------
T
I
I
A
L
A
-
V
L
--------------------------------------------------------------
11
PsiBlast_PDB
48.06
25%
-203
- C3 -
-
4TPG
-
?
A:
[371-485]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
F
-
I
Y
G
---
F
A
G
Q
F
A
V
-
N
G
-----------
K
T
S
S
W
V
-
M
I
W
--
G
Y
-
A
----
S
Y
------
S
L
G
-
E
L
L
V
S
G
L
----
G
--
L
--
A
---
M
I
A
R
Y
-----------------------
F
---
M
M
G
-----
A
-
Y
----
F
V
A
--
S
G
I
-
S
Q
Y
L
G
G
------
V
V
--------------
A
N
--------
F
-
A
--------------
S
V
P
Q
D
L
V
D
P
------
L
Q
T
L
P
V
---
Y
T
N
L
-
F
N
K
-------
L
-
G
V
A
A
-
V
V
C
-------
T
I
I
A
L
A
-
V
L
--------------------------------------------------------------
21
Fugue
45.95
20%
-291
- C2 -
-
1ZV1
-
DSX_DROME
A:
[6-64]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
D
V
F
L
-
D
Y
C
Q
K
L
L
E
-
K
F
R
Y
--------------------------------
P
W
E
L
M
-----
P
L
M
-
Y
--
V
I
L
-
K
D
A
-----
D
A
N
I
E
-
E
A
-----------
S
R
R
I
E
E
-
G
Q
Y
--
V
V
-
N
----
E
Y
------
S
R
Q
-
H
N
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
43.99
25%
-201
- C3 -
-
4TPH
2
?
A:
[371-485]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
F
-
I
Y
G
---
F
A
G
Q
F
A
V
-
N
G
-----------
K
T
S
S
W
V
-
M
I
W
--
G
Y
-
A
----
S
Y
------
S
L
G
-
E
L
L
V
S
G
L
----
G
--
L
--
A
---
M
I
A
R
----------------------------
M
M
G
-----
A
-
Y
----
F
V
A
--
S
G
I
-
S
Q
Y
L
G
G
------
V
V
--------------
A
N
--------
F
-
A
--------------
S
V
P
Q
D
L
V
D
P
------
L
Q
T
L
P
V
---
Y
T
N
L
-
F
N
K
-------
L
-
G
V
A
A
-
V
V
C
-------
T
I
I
A
L
A
-
V
L
--------------------------------------------------------------
14
PsiBlast_PDB
41.91
30%
-255
- C3 -
-
2B2H
-
?
A:
[8-74]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
--
I
L
-
A
----
S
T
------
A
L
V
-
M
L
M
V
P
G
V
----
G
--
F
F
Y
A
---
G
M
V
R
R
---
K
N
A
V
---
N
------
M
I
A
L
S
F
I
S
L
I
I
T
V
-----
L
-
L
----
W
I
F
--
Y
G
Y
-
S
V
S
F
G
N
------
D
I
--------------
S
G
--------
I
I
G
--------------
G
L
-----------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
41.63
30%
-248
* C3 *
-
2B2J
5
?
A:
[8-74]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
--
I
L
-
A
----
S
T
------
A
L
V
-
M
L
M
V
P
G
V
----
G
--
F
F
Y
A
---
G
M
V
R
R
---
K
N
A
V
---
N
------
M
I
A
L
S
F
I
S
L
I
I
T
V
-----
L
-
L
----
W
I
F
--
Y
G
Y
-
S
V
S
F
G
N
------
D
I
--------------
S
G
--------
I
I
G
--------------
G
L
-----------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
41.12
30%
-246
- C3 -
-
2B2F
-
?
A:
[8-74]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
--
I
L
-
A
----
S
T
------
A
L
V
-
M
L
M
V
P
G
V
----
G
--
F
F
Y
A
---
G
M
V
R
R
---
K
N
A
V
---
N
------
M
I
A
L
S
F
I
S
L
I
I
T
V
-----
L
-
L
----
W
I
F
--
Y
G
Y
-
S
V
S
F
G
N
------
D
I
--------------
S
G
--------
I
I
G
--------------
G
L
-----------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
40.88
30%
-248
- C3 -
-
2B2I
-
?
A:
[8-74]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
--
I
L
-
A
----
S
T
------
A
L
V
-
M
L
M
V
P
G
V
----
G
--
F
F
Y
A
---
G
M
V
R
R
---
K
N
A
V
---
N
------
M
I
A
L
S
F
I
S
L
I
I
T
V
-----
L
-
L
----
W
I
F
--
Y
G
Y
-
S
V
S
F
G
N
------
D
I
--------------
S
G
--------
I
I
G
--------------
G
L
-----------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
38.68
41%
-236
- C4 -
-
4E1C
2
A:
[26-54]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
I
E
N
------
E
L
--------------
A
G
--------
L
V
V
--------------
A
M
P
A
N
S
A
Q
K
------
F
G
-------
Y
V
K
S
-
A
Q
G
-----------------------------------------------------------------------------------------------
3
PsiBlast_PDB
37.96
41%
-232
- C4 -
-
4E1F
1
A:
[26-54]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
I
Q
N
------
E
L
--------------
A
G
--------
L
V
V
--------------
A
M
P
A
N
S
A
Q
K
------
F
G
-------
Y
V
K
S
-
A
Q
G
-----------------------------------------------------------------------------------------------