@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : spr0152: (2017-12-16 )
MGRFLDFVFNRFFLGMIATAFFWLLTLAGGIILGLAPASATLMSLYAEHGYSFREYSLKEAWSLYKQNFVSSNLIFYSFLGVGLVLTYGLYLLVQLPHQTIVHLIATLLNVLVVALIFLAYTVSLKLQVYFALSYRNSLKLSLIGIFMSLAAVAKVLLGTVLLVAIGYYMPALLFFVGIGMWHFFISDMLEPVYEIIHEKLATK
Atome Classification :
(16 SA)
--------------------------------------------------------------------------------------------------------------------------------........----.10.....-------...20........30........40........--50...-..-..-----.-----60--------........70.---------.-----......----------80---.......--..90.....---.---..100.-......110.-----.....-.120----------........130-----------........140.....------..150....---...160.......170----------........180----.......------190.......--------200..--------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------M
G
R
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LAG
G
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LA
P
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H--GY
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-
E
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-
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E
A
--------
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NFVSS---------
N
-----
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I
F
Y
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F
----------
L
----
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L
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--
Y
G
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Y
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L
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QL---
P
---
H
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-
L
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A
T
L
L
N
V
L
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-----
V
A
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L
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Y
-----------
T
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L
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L
Q
V
Y
F
------------
A
L
SYRNS
L
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L
S
L
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I
F
------
M
S
L
A
A
V
A
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---
L
L
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A
I
G
Y
Y
M
P
-----------
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----
H
F
F
I
S
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M
------
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E
P
V
Y
E
I
I
H
E
--------
K
LATK--------------------------------------------------------------------------------------------------
19
Fugue
68.49
19%
-126
- C2 -
-
4WBX
-
?
C:
[4-382]
---------------------------------------------------------------------------------------------------------------RFPFPVGEPDFIQGDEA
I
A
R
A
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A
----
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C
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Y
A
G
Y
PITPASE
I
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WA
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-
T
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T
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-----
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-----
P
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--------
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Y
A
---------
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MTETP
V
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V
QRSGLPAQGD
I
----
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A
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--
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SPS
T
---
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KYRTP
V
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-
D
A
E
-----------
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R
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I
PNPDEIEIINRL
I
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D
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TYETYE
L
E
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FDF--------
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D
----
K
L
Y
V
P
E
M
N-----
L
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L
Y
H
L
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E
GANGKAEV
K
L
I
S
K
IGGEVHTPMEIFEFI-----------------------------------------------------------------------------------
12
Fugue
58.15
21%
-195
- C1 -
-
4US3
11
?
A:
[10-450]
GREQWASRL
G
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A
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A
VGLGNI
W
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GG
A
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QSD
A
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APGKPWK
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A
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GQLWSAPAEG
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NPT
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-------
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A
I
--
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L
L
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--
L
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A
-
I
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-
S
L
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LGG
A
K
-----
E
G
L
A
F
L
FSPD
W
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A
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K
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P
G
V
Y
L
---------
A
-----
A
I
S
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A
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----------
F
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SL
G
M
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A
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--
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V
------------
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A
A
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V
A
G
-----
L
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-
A
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I
-----------
A
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M
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A
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F
------------
A
L
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P
G
L
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F
V
V
------
L
P
-
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---
R
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A
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F
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-----------
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A
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A
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L
L
----
E
V
P
V
A
Y
F
------
M
R
K
F
-
D
W
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R
K
--------
Q
A
A
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I
I
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L
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L
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F
GVLGEVTIIPGLN
I
F
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F
I
A
SSV
F
L
P
L
G
G
M
I
I
A
L
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WGWK
T
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A
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A
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DLTDS
V
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A
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A
F
15
Fugue
57.53
13%
-89
- C1 -
-
2IS5
1
?
A:
[2-164]
------------------------------------------------------------------------------------------------------------------------------------
A
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K
----
F
N
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F
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N
R
V
-------
L
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E
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P
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--
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R
A
M
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-----
E
-----
Q
A
--------
I
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I
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R
K
A
F
W
E
R
-------------------------------------------------
Y
R
A
D
Q
M--
P
---
E
A
V
A
F
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-
F
F
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A
C
V
N
H
G
Y
-----
G
N
A
A
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M
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R
-----------
A
A
G
V
P
D
D
----------------------------
G
V
-------
I
G
A
V
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L
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A
I
---
N
S
L
P
E
N
D
L
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F
N
A
E
-----------
R
L
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F
Y
T
K
L
G
T
F
----
T
S
F
G
K
G
W
------
V
R
R
V
A
Q
N
L
I
H
--------
A
S
A
----------------------------------------------------------------------------------------------------
18
Fugue
46.64
11%
-113
* C2 *
-
1E7P
-
FRDB_WOLSU
B:
[1-239]
--------------------------------------------------------------------------------------------------------------------------------
M
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--
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-----
A
GICGS
C
G
--------
M
M
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N
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R
P
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L
A
C
---------
R
-----
T
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----------
E
----
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---------
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V
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P
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---
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---
A
F
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L
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N
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F
N
-----
G
M
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R
-
V
E
S
WIHAQKEHDIS
K
L
E
E
R
I
E
P
E
V
------------
A
Q
E
V
F
E
L
D
R
C
I
E
C
G
C
C
------
I
A
A
C
G
T
K
I
M
RED
F
V
G
A
A
G
L
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R
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V
R
F
M
I
DPHDERT
D
E
D
Y
Y
E
L
I
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D
D
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V
F
GCMT
L
L
A
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CPKNLP
L
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Y
L
R
R
--------
K
M
V
S
V
N-------------------------------------------------------------------------------------------------
20
Fugue
40.96
9%
-107
- C2 -
-
1E7P
-
FRDB_WOLSU
K:
[1-239]
--------------------------------------------------------------------------------------------------------------------------------
M
G
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D
-
F
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-
C
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-----
A
GICGS
C
G
--------
M
M
I
N
G
R
P
S
L
A
C
---------
R
-----
T
L
T
K
D
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----------
E
----
D
G
V
I
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L
L
PL
P
A
F
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L
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---
S
VDT
G
N
W
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N
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H
-
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------------
A
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E
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C
I
E
C
G
C
C
------
I
A
A
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K
I
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RED
F
V
G
A
A
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L
N
R
V
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R
F
M
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DPHDERTDEDY
Y
E
L
I
G
D
D
D
G
V
F
GCMT
L
L
A
C
H
D
V
CPKNLP
L
Q
S
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I
A
Y
L
R
R
--------
K
M
V
S
V
N-------------------------------------------------------------------------------------------------
8
HHSearch
35.91
6%
-284
- C1 -
-
3BHP
-
YNZC_BACSU
C:
[31-48]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
K
-
L
R
-----
Q
-----
E
Y
--------
L
K
G
F
R
S
S
M
K
N
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
35.38
25%
-60
- C1 -
-
5CQQ
2
ZEST_DROME
A:
[4-82]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
P
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F
T
A
E
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K
E
V
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Y
T
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H
L
H
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I-
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Y
-
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-----
R
-----
E
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--------
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D
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PHVS
A
M
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I
Q
K
F
W
----------
L
----
N
S
R
L
R
K
Q
--
Y
P
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
34.28
6%
-284
- C1 -
-
3BHP
-
YNZC_BACSU
B:
[31-48]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
K
-
L
R
-----
Q
-----
E
Y
--------
L
K
G
F
R
S
S
M
K
N
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
33.69
15%
-124
- C1 -
-
4A2N
1
?
B:
[166-185]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
E
E
-
E
L
-
L
I
-----
E
-----
E
F
--------
G
D
E
Y
I
E
Y
M
G
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
25.56
14%
-217
- C1 -
-
5X29
-
?
E:
[24-64]
----------------------------------------------------------------------------------------------------------------------------------------------
E
T
G
T
L
I
-------
V
N
S
V
L
L
F
L
A
F
V
---
V
F
L
L
V
T
L
A
I
L
T
A
L
R
L
A
A
Y
A
--
A
N
I
V
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
18.98
40%
18
* C1 *
-
1DNG
-
?
A:
[1-15]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
A
P
A
Y
E
E
A
A
E
--------
E
L
A
K
S
--------------------------------------------------------------------------------------------------
1
HHSearch
17.21
28%
-12
- C1 -
-
2JQ3
-
APOC3_HUMAN
A:
[39-63]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
R
G
W
--
V
T
D
G
--
F
S
-
S
L
-----
K
-----
D
Y
--------
W
S
T
V
K
D
K
F
S
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
Fugue
14.36
25%
38
- C1 -
-
3ECH
-
?
C:
[2-25]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
D
Y
--
T
E
Q
L
R
-
R
A
-
A
R
-----
R
-----
N
A
--------
W
D
L
Y
G
E
H
F
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
13.87
12%
-40
- C1 -
-
3TX3
2
?
A:
[192-225]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
F
-----
P
-----
R
M
--------
R
S
E
L
H
Q
Q
R
S
K
T
---------
L
-----
G
F
G
F
G
V
----------
T
----
V
L
T
M
I
P
L
--
I
N
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
12.85
12%
-35
- C1 -
-
3TX3
4
?
B:
[192-225]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
F
-----
P
-----
R
M
--------
R
S
E
L
H
Q
Q
R
S
K
T
---------
L
-----
G
F
G
F
G
V
----------
T
----
V
L
T
M
I
P
L
--
I
N
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
10.08
8%
-90
- C1 -
-
3HZQ
-
MSCL_STAAW
A:
[1-30]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
--------
L
K
E
F
K
E
F
A
L
K
G
---------
N
-----
V
L
D
L
A
I
----------
A
----
V
V
M
G
A
A
F
--
N
K
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------