@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : spr0155: (2017-12-16 )
MYSFTKGAIILSGGSIMKKKPIYLWVLLILSALISVPSLFGIVSPLPSKEALRAAQKQVAGVNAQQLEDQLNYTYRVAEASHSIFNVALIVLSTILVVVAIVFLVRKNLQYANYTYVGYVLLAIIGSIYGYVGLQDAVQLVQDESMRLTVSIGSKAVSIFYIVINVLFLALVFYKMWRQQKALAEEEETEELT
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------.........10.....-...20........30...--.....40....---....50........60........70........80........90.......-.100---.........110.....----------..120-.....---...130---.---..-...-..140-----........150-.......160...-------....170.......180.......190.------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------MYSFT
K
G
A
I
I
LSGGS
I
-
M
KKK
P
I
Y
L
W
V
L
L
I
L
S
A
L
I
--
S
V
P
S
L
F
G
IVSP---LP
S
K
E
A
L
R
A
A
Q
K
Q
VAGV
N
A
Q
Q
L
E
D
QL
N
Y
T
Y
R
VAEASH
S
I
F
N
V
A
L
I
V
L
S
T
I
L
V
V
-
V
A
-----
I
V
F
L
V
R
KNLQYA
N
Y
T
Y
V
----------
G
Y
V
L
--
L
A
I
I
G
---
S
I
Y
G
Y----V---
G
L
-
Q
D
A
-
V
Q
L
V
------QDES
M
R
L
T
V
S
I-GSK
A
V
S
I
F
Y
I
V
I
N
-------
V
L
F
L
A
L
V
F
Y
K
M
W
R
Q
Q
K
A
LA
E
E
E
E
TEELT------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
86.96
22%
0
- C- -
-
1KX5
-
H32_XENLA
A:
[1-135]
------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
R
T
K
Q
T
A
R
K
S
T
G
G
K
-
A
P
R
K
Q
-----
L
A
T
K
A
A
R
K
--
S
A
P
A
T
G
G
V
K
K
P
HRY
R
P
G
T
V
A
L
R
E
I
R
R
Y
Q
K
--
S
T
E
L
L
I
R
K
L
P
F
Q
R
L
V
R
E
I
A
Q
D
F
K
T
--------------------------------
D
L
R
F
Q
----------
S
S
A
V
--
M
A
L
Q
E
---
A
S
E
A
Y
L
---
V
---
A
L
-
F
E
D
-
T
N
L
C
------
A
I
H
A
K
R
V
T
I
M
----------------------------------
P
K
D
I
Q
L
A
R
R
I
R
G
E
R
A
-------------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
71.70
20%
-45
- C6 -
-
5TPM
-
PDHR_ECOLI
A:
[1-155]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
N
A
D
L
-
L
E
T
R
H
A
L
E
G
I
A
A
Y
Y
A
A
L
R
--
S
T
D
E
D
K
E
R
I
R
E
---
L
--
H
H
A
I
E
L
A
Q
Q
S
--
G
D
L
D
A
E
S
N
A
V
L
Q
Y
Q
I
A
V
T
E
A
A
H
N
------
V
V
L
L
H
L
L
R
C
M
E
P
M
----
L
A
Q
N
V
R
Q
N
F
E
L
L
-
Y
S
------------------------------------------
R
R
E
M
L
P
L
V
------
S
S
H
R
T
R
I
F
E
A
I
M
A
G
K
--
P
E
E
A
R
E
A
S
-------
H
R
H
L
A
F
I
E
E
I
L
L
D
R
S
R
E
E
S
R
R
E
R
S
L
R
R
L
E-----------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
69.04
20%
-89
- C5 -
-
5I2X
-
ACD_HUMAN
A:
[1-150]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
G
R
L
V
-
L
R
P
-----
W
----
I
R
E
L
I
--
L
G
S
E
T
P
S
S
P
R
A
---
G
Q
L
L
E
V
L
Q
D
A
E
A
A
V
A
G
P
S
H
A
P
D
T
S
D
V
G
A
T
L
L
V
S
D
G
T
H
S
V
R
C
L
V
----------------------
T
R
E
A
L
D
T
S
D
W
E
--------------------------
E
E
F
G
F
----
R
---
G
T
-
E
G
R
-
L
L
L
L
------
Q
D
C
G
V
H
V
Q
V
A
E
-
G
G
A
P
-
A
E
F
Y
L
Q
V
D
-------
R
F
S
L
L
P
T
E
Q
P
R
L
R
V
P
G
C
N
Q
D
L
D
V
Q
K
K
L
Y
D
C
L
E
E-------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
66.48
16%
-121
- C2 -
-
2OCC
-
COX1_BOVIN
A:
[1-514]
MFINRWLFSTN
H
K
D
I
G
T
L
Y
L
L
F
G
A
W
A
G
M
V
G
T
A
L
S
L
L
I
R
A
E
L
GQPGTLLGD
D
Q
I
Y
N
V
V
V
T
A
H
A
F
V
M
I
FFMVMPIMIGGFGNWL
V
P
L
M
I
GAPDMAF
P
R
M
N
N
M
S
F
W
L
L
P
P
S
F
L
L
L
L
A
S
S
M
VEAGAGTGWTVYPPLAGNLAHAGA
S
V
D
L
T
I
F
S
L
H
L
A
G
V
S
S
I
L
G
A
I
N
F
I
T
T
I
I
N
M
K
P
P
A
M
S
Q
Y
Q
T
P
L
F
V
W
S
V
M
I
T
A
V
L
L
L
L
S
L
P
V
L
A
A
G
I
T
M
---
L
L
T
D
R
N
L
-----
N
T
T
F
F
D
P
A
G
G
G
D
P
I
L
Y
Q
H
L
F
W
F
F
G
H
P
--
E
V
Y
I
L
I
L
P
G
F
G
M
I
-
S
H
-----
I
V
T
Y
Y
S
G
K
K
E
P
F
G
Y
M
G
M
----------
V
W
A
M
--
M
S
I
G
F
L
G
F
I
V
W
A
H
HMFT
V
---
G
M
D
V
D
T
-
R
A
Y
F
------
T
S
A
T
M
I
I
A
I
P
T
-
G
V
K
V
F
S
W
L
A
T
L
H
G
GNIKWS
P
A
M
M
W
A
L
G
F
I
F
L
F
T
V
G
G
L
T
G
I
V
L
A
N
S
S
L
D
IVLHDTY
Y
V
V
A
H
F
H
Y
V
L
S
MG
A
V
F
A
I
M
G
G
F
V
H
W
F
PLFSGYTLN
D
T
W
A
K
I
H
F
A
I
M
F
V
G
V
N
M
T
FFP
Q
H
F
L
G
L
S
G
M
P
R
RYSDYPDAY
T
M
W
N
T
I
S
S
M
G
S
F
I
S
L
T
A
V
M
L
M
V
F
I
I
W
E
A
F
A
S
KREVLTVDLTTTNLEWLNGCPPPYHTFE
E
P
T
Y
V
N
LK
2
PsiBlast_PDB
62.19
20%
0
- C- -
-
4HEA
-
NQO12_THET8
L:
[236-352]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
S
A
L
I
H
A
A
T
M
V
T
-
A
G
-----
V
Y
L
I
A
R
S
S
F
L
Y
S
V
L
P
D
V
----------
S
Y
A
I
AV
V
G
L
L
T
---
A
A
Y
G
A
----
L
SAF
G
Q
-
T
D
I
-
K
K
I
V
AYSTIS
Q
L
G
Y
M
F
L
A
A
G
V
-
G
A
Y
W
V
A
L
F
H
V
F
T
H
-------
A
F
F
K
A
L
L
F
L
A
S
G
S
V
I
H
A
L
G
G
E
Q
D
V
R
K
M
-------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
54.80
20%
-174
- C6 -
-
4HE8
-
NQO12_THET8
L:
[236-352]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
S
A
L
I
H
A
A
T
M
V
T
-
A
G
-----
V
Y
L
I
A
R
S
S
F
L
Y
S
V
L
P
D
V
----------
S
Y
A
I
AV
V
G
L
L
T
---
A
A
Y
G
A
----
L
SAF
G
Q
-
T
D
I
-
K
K
I
V
AYSTIS
Q
L
G
Y
M
F
L
A
A
G
V
-
G
A
Y
W
V
A
L
F
H
V
F
T
H
-------
A
F
F
K
A
L
L
F
L
A
S
G
S
V
I
H
A
L
G
G
E
Q
D
V
R
K
M
-------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
45.91
15%
-110
- C4 -
-
2KCO
-
RS8E_SULSO
A:
[1-133]
----------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
F
Y
Q
G
P
D
N
R
K
I
T
G
G
L
-
K
G
K
H
----------------
R
D
K
R
K
Y
E
I
G
N
P
---
P
T
F
T
T
L
S
A
E
D
I
R
I
K
D
R
T
L
G
G
N
F
K
V
R
L
K
Y
T
T
T
A
N
V
L
D
P
A
T
N
T
A
K
K
V
K
I
L
E
I
L
E
T
-
P
A
-----
N
K
E
L
A
R
R
G
I
I
I
R
G
A
K
I
R
----------
T
E
A
G
--
L
A
V
V
T
---
S
R
P
G
Q
----
D
---
G
V
-
I
N
A
-
V
L
L
K
------
N
E
S
Q
R
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
38.60
26%
-5
* C6 *
-
5U9X
-
OCEK1_LEPKN
A:
[1-23]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
V
V
D
I
L
K
G
A
A
K
D
I
A
G
H
L
A
S
K
V
M
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
38.19
18%
-355
- C6 -
-
2L2T
-
B:
[65-81]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
I
V
G
L
T
F
A
V
Y
V
R
R
K
S
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
36.78
28%
-113
- C6 -
-
5B16
-
DGCR8_HUMAN
B:
[1-25]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
N
L
H
I
L
S
K
L
Q
E
E
M
K
R
L
A
E
E
R
E
E
T
R
--------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
36.33
22%
-78
- C6 -
-
3ZLJ
-
?
C:
[23-53]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
P
A
V
E
A
L
E
N
L
D
P
R
-----
S
L
T
P
R
Q
A
L
E
W
I
Y
R
L
K
S
L
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
35.65
25%
-388
- C6 -
-
1WAZ
-
?
A:
[52-67]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
F
I
G
L
T
I
Y
A
I
Q
R
K
R
Q
------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
34.99
24%
-174
- C6 -
-
2M67
-
?
A:
[46-70]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
L
P
A
L
-------
A
I
F
I
G
L
T
I
Y
A
I
Q
R
K
R
Q
A
D
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
30.79
19%
2
- C3 -
-
2WGO
-
?
A:
[-1-96]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
L
I
L
D
G
D
L
---
L
K
D
K
L
K
L
P
V
I
D
N
L
F
G
K
E
L
L
D
K
F
Q
D
D
I
K
D
K
Y
G
V
D
T
K
D
L
K
I
L
K
T
S
E
D
K
R
F
Y
Y
V
S
V
-
D
A
GDGEK
C
K
F
K
I
R
K
D
V
D
V
P
K
M
V
G
R
KCRKDDDDDD
G
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
29.89
22%
-172
- C6 -
-
2RDD
-
YAJC_ECOLI
B:
[9-31]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
-------
V
V
F
G
L
I
F
Y
F
M
I
L
R
P
Q
Q
K
R
T
K
E
H
------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
28.09
22%
-198
- C6 -
-
2LJ2
-
?
A:
[46-68]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
L
P
A
L
-------
A
I
F
I
G
L
T
I
Y
A
I
Q
R
K
R
Q
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
26.97
9%
-202
- C6 -
-
2L6W
-
B:
[17-38]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
V
L
T
-------
I
I
S
L
I
I
L
I
M
L
W
Q
K
K
P
R
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
26.13
19%
-247
- C6 -
-
5LV6
-
B:
[14-40]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
T
G
M
V
G
A
L
L
L
-------
L
L
V
V
A
L
G
I
G
L
F
M
R
R
R
H
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
21.48
16%
178
- C6 -
-
2RMZ
-
?
A:
[707-725]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
G
L
A
A
L
L
I
W
K
L
L
I
T
I
H
D
R
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
20.98
17%
-105
- C6 -
-
2JWA
-
B:
[169-180]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
V
F
G
I
L
I
K
R
R
Q
Q
------------------------------------------------------------------------------------------------------------------------------------------------------------------