@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : spr0181: (2017-12-16 )
MLTKEEVNDMIEFKQTHLHRFREIETFVKLCKKSLKQPSQADNPRTF
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------......-...10....---------...-.20........30........40......-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ML
T
K
E
E
-
V
N
D
M
I
E
F
K
Q
---------
T
H
L
-
H
R
F
R
E
I
E
T
F
V
K
L
C
K
K
SLKQPSQADNPRTF-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
64.69
29%
-189
* C2 *
-
1Q90
1
PETL_CHLRE
L:
[1-32]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
T
I
T
S
Y
V
G
L
L
I
G
A
L
V
---------
F
T
L
-
G
I
Y
L
G
L
L
K
V
V
K
L
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
61.89
19%
-4
- C2 -
-
5FJ8
-
RPC3_YEAST
O:
[31-654]
---------------------------------------------------------------------VMTISSLEQRTLNPDLF
L
Y
K
E
L
V
K
A
H
LG
E
R
A
A
S
V
I
G
M
L
V
A
L
GRLS
V
R
E
L
V
E
K
IDGMD
V
D
S
V
K
T
T
L
V
S
L
T
Q
L
RC
V
K
Y
L
Q
E
T
A
IS
G
K
K
T
T
Y
Y
Y
YNEE
G
I
H
I
L
L
Y
S
G
L
I
I
D
E
I
I
T
Q
M
R
-
V
N
D
E
E
E
H
K
Q
---------
L
V
A
-
E
I
V
Q
N
V
I
S
L
G
S
L
T
V
E
D
Y
L
S
S
V
T
S
D
S
M
K
Y
T
ISSL
F
V
Q
L
C
EMGYLIQISKLHYTP
I
E
D
L
W
Q
F
L
Y
EKHYKNIPRNSPLS
D
L
K
K
R
S
Q
A
K
M
N
A
K
T
D
F
A
K
I
I
N
KPNELSQILT
V
D
P
K
TSLRIVKPT
V
S
L
T
I
NLD
R
F
M
K
G
R
R
S
K
Q
L
I
N
L
A
K
T
R
VG
S
V
T
A
Q
V
Y
K
I
A
L
R
L
T
EQKSPKIRDPLTQTG
L
L
Q
D
LEE
A
K
S
F
Q
D
E
A
E
L
V
E
E
K
T
PGLTFNAIDLARHLPSASLI
N
S
H
L
K
I
L
A
S
S
NFPFLNETKPG
V
Y
Y
V
P
YS
K
L
M
P
V
L
K
S
S
V
Y
E
Y
V
I
A
S
T
LG
P
S
A
M
R
L
S
R
C
I
R
D
NKLVSEK
I
I
N
S
T
ALMK
E
K
D
I
R
S
T
L
A
S
L
I
RYNSVE
I
Q
E
V
P
R
TAD
R
S
A
S
RA
V
F
L
F
R
C
K
E
T
H
S
Y
N
F
M
R
Q
N
L
E
W
N
M
A
N
L
L
F
K
K
E
K
L
K
Q
E
N
S
T
L
L
K
K
A
N
R
D
DLL
P
S
E
L
N
Q
L
K
M
V
N
E
R
E
L
N
V
F
A
R
L
S
R
L
L
S
L
W
E
V
F
QMA
30
Fugue
56.62
23%
61
- C2 -
-
4XGC
-
?
D:
[5-457]
D
R
E
L
V
S
I
R
R
F
L
K
E
R
L
Q
RDYTTLRGY
A
K
E
R
S
N
V
R
L
L
L
Q
R
T
A
E
MG
E
S
N
S
L
L
L
L
G
P
RGSG
K
T
T
L
I
N
S
V
L
A
D
L
L
P
NK
S
F
G
E
N
T
L
I
V
H
L
D
GNLHTD
D
R
V
A
L
K
S
I
T
V
Q
M
QLENAADGKVFGS
F
A
E
N
L
A
F
L
L
Q
C
L
KS
K
S
V
I
F
I
L
E
E
F
D
L
F
C
A
HHNQ
T
L
L
Y
N
L
F
D
V
S
Q
S
AQ
A
P
I
C
V
L
G
V
T
CRLDVI
E
L
L
E
K
R
-
V
K
S
R
F
S
H
R
Q
---------
V
F
L
F
P
S
L
R
R
F
E
D
Y
V
D
L
C
R
D
L
L
S
L
P
T
G
N
S
L
L
L
A
A
E
K
I
Y
N
L
Q
N
IQSGALYFSRNHFDPGE
Y
G
F
S
P
R
L
R
D
A
W
N
K
Q
I
C
K
V
L
A
T
Q
Q
A
R
S
T
L
Q
A
L
H
D
F
DIS
E
A
Y
L
K
N
F
L
F
R
L
V
A
H
LRPQSPHIT
A
E
K
M
A
A
V
G
S
Q
F
E
GD
D
K
I
E
L
L
C
G
LS
V
L
E
L
C
L
I
I
A
I
K
H
H
S
Q
I
Y
DRDSFN
F
E
I
I
Y
A
R
F
S
K
F
A
K
V
STTMQAVER
S
I
V
L
K
A
F
E
H
L
R
I
A
EL
I
M
P
L
TKVQKEF
E
M
H
K
L
ALT
Y
S
Q
I
H
H
C
M
Q
R
YQALPT
E
V
A
Q
W
A
QSS-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
55.79
30%
-162
- C2 -
-
5G06
-
RRP42_YEAST
E:
[2-37]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
L
S
V
A
E
-
K
S
Y
L
Y
D
S
L
A
STPSIRPDG
R
L
P
-
H
Q
F
R
P
I
E
I
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
55.72
31%
-138
- C2 -
-
2EHO
-
SLD5_HUMAN
I:
[111-126]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
L
S
P
E
E
-
L
A
F
A
R
E
F
M
A
---------
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
55.07
31%
-200
- C2 -
-
2E9X
-
SLD5_HUMAN
D:
[122-137]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
S
P
E
E
-
L
A
F
A
R
E
F
M
A
---------
N
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
53.01
31%
-326
- C2 -
-
5JQK
-
?
A:
[607-622]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
T
N
Q
E
-
I
K
E
L
N
E
Y
H
T
---------
T
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
50.09
29%
118
- C1 -
-
1M06
3
J_BPAL3
J:
[1-24]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
K
A
R
R
S
P
S
R
R
K
G
A
R
L
W
YVGGSQF----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
49.11
25%
-244
- C2 -
-
4S2R
-
XPP_CAEEL
Q:
[596-611]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
I
E
E
E
-
I
N
W
L
N
Q
Y
H
A
---------
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
49.09
25%
-252
- C2 -
-
4S2T
-
XPP_CAEEL
P:
[596-611]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
I
E
E
E
-
I
N
W
L
N
Q
Y
H
A
---------
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
48.20
31%
-231
- C2 -
-
5JR6
-
?
A:
[607-622]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
T
N
Q
E
-
I
K
E
L
N
E
Y
H
T
---------
T
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
47.32
28%
-28
- C2 -
-
5JEA
-
RRP42_YEAST
E:
[5-48]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
L
S
V
A
E
-
K
S
Y
L
Y
D
S
L
A
STPSIRPDG
R
L
P
-
H
Q
F
R
P
I
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
45.21
22%
-193
- C2 -
-
3CTZ
-
XPP1_HUMAN
A:
[576-593]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
L
T
D
K
E
-
C
D
W
L
N
N
Y
H
L
---------
T
C
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
43.48
15%
-198
- C2 -
-
1T08
-
CNBP1_HUMAN
B:
[26-45]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
A
S
E
-
E
E
F
L
R
T
Y
A
G
---------
V
V
N
-
S
Q
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
41.52
14%
-176
- C2 -
-
1LUJ
-
CNBP1_HUMAN
B:
[33-53]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
A
S
E
-
E
E
F
L
R
T
Y
A
G
---------
V
V
S
-
S
Q
L
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
41.47
18%
-134
- C2 -
-
2E9X
-
PSF1_HUMAN
E:
[105-121]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
M
A
A
E
E
-
M
E
W
F
N
N
Y
K
R
---------
S
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
40.40
19%
-119
- C2 -
-
3JC6
-
SLD5_YEAST
D:
[175-199]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
S
K
D
E
-
I
K
Y
H
D
T
H
S
L
---------
I
W
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
38.57
19%
-134
- C2 -
-
3JC7
-
PSF1_YEAST
A:
[123-138]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
S
H
Q
E
-
Q
E
Y
L
K
E
Y
C
D
---------
L
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
37.30
23%
25
- C2 -
-
3DBY
-
?
O:
[235-260]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
M
A
R
E
E
C
Y
Y
L
L
K
L
A
Q
S
S
G
L
E
M
P
K
C
N
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
37.27
19%
-76
- C2 -
-
5U8T
-
SLD5_YEAST
D:
[175-199]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
S
K
D
E
-
I
K
Y
H
D
T
H
S
L
---------
I
W
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------