@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : spr0217: (2017-12-17 )
MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQDFTYLRNEFEAFGQTLNVKINIQSAAIFEAMYNI
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------.........10........20........30.......---.------40........-50.-.-.-.....60....-....70........80.......-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------M
K
A
I
I
T
V
V
GKDKS
G
I
V
AGVSG
K
I
A
E
LGL
N
I
D
D
I
S
Q
T
V
L
---
D
------
E
Y
F
T
M
M
A
V
VS-SDE-K-
Q
-
D
F
T
Y
L
R
N
E
F
E
A
-FG
Q
T
L
N
V
K
I
N
I
Q
S
A
A
I
F
E
A
M
YNI-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
94.62
100%
-172
- C2 -
-
1ZPV
-
Y238_STRPN
A:
[5-86]
-------------------------------------------------------------------------------------------
K
A
I
I
T
V
V
G
K
D
K
S
G
I
V
A
G
V
S
G
K
I
A
E
L
G
L
N
I
D
D
I
S
Q
T
V
L
---
D
------
E
Y
F
T
M
M
A
V
V
S
-
S
D
E
-
K
-
Q
-
D
F
T
Y
L
R
N
E
F
E
A
-
F
G
Q
T
L
N
V
K
I
N
I
Q
S
A
A
I
F
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
HHSearch
94.41
100%
-169
- C2 -
-
1ZPV
-
Y238_STRPN
C:
[5-89]
-------------------------------------------------------------------------------------------
K
A
I
I
T
V
V
G
K
D
K
S
G
I
V
A
G
V
S
G
K
I
A
E
L
G
L
N
I
D
D
I
S
Q
T
V
L
---
D
------
E
Y
F
T
M
M
A
V
V
S
-
S
D
E
-
K
-
Q
-
D
F
T
Y
L
R
N
E
F
E
A
-
F
G
Q
T
L
N
V
K
I
N
I
Q
S
A
A
I
F
E
A
M
Y
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
93.76
96%
-172
- C2 -
-
1ZPV
-
Y238_STRPN
A:
[5-86]
-------------------------------------------------------------------------------------------
K
A
I
I
T
V
V
G
K
D
K
S
G
I
V
A
G
V
S
G
K
I
A
E
L
G
L
N
I
D
D
I
S
Q
T
V
L
---
D
------
E
Y
F
T
M
M
A
V
V
S
-
S
D
E
-
K
-
Q
-
D
F
T
Y
L
R
N
E
F
E
A
-
F
G
Q
T
L
N
V
K
I
N
I
Q
S
A
A
I
F
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
41
HHSearch
65.40
17%
-205
- C2 -
-
1U8S
-
?
A:
[94-180]
--------------------------------------------------------------------------------------------
V
E
V
Y
V
E
S
D
D
K
L
G
L
T
E
K
F
T
Q
F
F
A
Q
R
Q
I
G
M
A
S
L
S
A
Q
T
I
---
S
------
N
Q
F
H
I
A
I
S
A
R
-
V
D
S
-
G
-
C
-
N
L
M
Q
L
Q
E
E
F
D
A
-
L
C
T
A
L
D
V
Q
G
S
L
N
F
I
K
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
61.48
27%
-222
- C2 -
-
1U8S
-
?
A:
[8-79]
---------------------------------------------------------------------------------------------
V
I
T
A
V
G
T
D
R
P
G
I
C
N
E
V
V
R
L
V
T
Q
A
G
C
N
I
I
D
S
R
I
A
M
F
---
G
------
K
E
F
T
L
L
M
L
I
S
-
G
S
P
-
S
---
N
I
T
R
V
E
T
T
L
P
L
-
L
G
Q
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
HHSearch
61.38
25%
-98
- C2 -
-
3OBI
2
?
B:
[6-88]
-------------------------------------------------------------------------------------------
Q
Y
V
L
T
L
S
C
P
D
R
A
G
I
V
S
A
V
S
T
F
L
F
E
N
G
Q
N
I
L
D
A
Q
Q
Y
N
D
TE-
S
------
G
H
F
F
M
R
V
V
F
N
-
A
A
A
-
K
V
I
-
P
L
A
S
L
R
T
G
F
G
V
-
I
A
A
K
F
T
M
G
W
H
M
R
D
R
E
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
HHSearch
60.93
25%
-97
- C2 -
-
3OBI
2
?
C:
[6-88]
-------------------------------------------------------------------------------------------
Q
Y
V
L
T
L
S
C
P
D
R
A
G
I
V
S
A
V
S
T
F
L
F
E
N
G
Q
N
I
L
D
A
Q
Q
Y
N
D
TE-
S
------
G
H
F
F
M
R
V
V
F
N
-
A
A
A
-
K
V
I
-
P
L
A
S
L
R
T
G
F
G
V
-
I
A
A
K
F
T
M
G
W
H
M
R
D
R
E
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
39
HHSearch
57.71
22%
-76
- C2 -
-
3O1L
6
?
A:
[22-102]
-------------------------------------------------------------------------------------------
T
F
R
L
V
I
A
C
P
D
R
V
G
I
V
A
K
V
S
N
F
L
A
S
H
N
G
W
I
T
E
A
S
H
H
S
D
NL-
S
------
G
W
F
F
M
R
H
E
I
R
-
A
D
T
L
P
-
F
-
D
L
D
G
F
R
E
A
F
T
P
-
I
A
E
E
F
S
M
D
W
R
I
T
D
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
HHSearch
56.75
25%
-77
- C2 -
-
3W7B
-
?
A:
[3-86]
-------------------------------------------------------------------------------------------
E
A
R
L
L
V
T
C
P
D
R
P
G
I
V
A
A
V
S
G
F
L
Y
A
H
G
A
N
I
T
D
L
Q
Q
H
S
T
DP
E
G
------
G
T
F
F
M
R
V
A
F
T
-
A
S
H
-
L
D
L
-
A
R
P
A
L
E
R
A
F
Q
E
V
V
A
S
R
F
Q
M
Q
W
R
L
A
Y
A
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
45
HHSearch
55.49
23%
-81
- C2 -
-
5JLP
1
SERB_MYCA1
A:
[4-83]
-------------------------------------------------------------------------------------------
S
V
L
I
T
V
T
G
V
D
Q
P
G
V
T
A
T
L
F
E
V
L
S
R
H
G
V
E
L
L
N
V
E
Q
V
V
I
---
R
------
H
R
L
T
L
G
V
L
V
C
-
C
P
A
-
D
-
V
A
D
G
P
A
L
R
H
D
V
E
A
-
A
I
R
K
V
G
L
D
V
S
I
E
R
S
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
HHSearch
54.81
23%
-75
- C2 -
-
5IS2
-
SERB_MYCA1
A:
[4-84]
-------------------------------------------------------------------------------------------
S
V
L
I
T
V
T
G
V
D
Q
P
G
V
T
A
T
L
F
E
V
L
S
R
H
G
V
E
L
L
N
V
E
Q
V
V
I
---
R
------
H
R
L
T
L
G
V
L
V
C
-
C
P
A
-
D
-
V
A
D
G
P
A
L
R
H
D
V
E
A
-
A
I
R
K
V
G
L
D
V
S
I
E
R
S
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
43
HHSearch
54.65
22%
-28
* C2 *
-
2NYI
-
?
A:
[93-176]
-------------------------------------------------------------------------------------------
E
Y
E
L
Y
V
E
G
P
D
S
E
G
I
V
E
A
V
T
A
V
L
A
K
K
G
A
N
I
V
E
L
E
T
E
T
L
---
P
A
PFAG
F
T
L
F
R
M
G
S
R
V
A
-
F
P
F
-
P
---
L
Y
Q
E
V
V
T
A
L
S
R
-
V
E
E
E
F
G
V
D
I
D
L
E
E
V
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
54.35
17%
53
- C2 -
-
1U8S
-
?
A:
[2-180]
SL
T
Q
H
L
V
I
T
A
V
G
TDRPG
I
C
N
E
V
V
R
L
V
T
Q
A
G
C
N
I
I
D
S
R
I
A
M
F
GK
E
F
T
L
L
M
L
I
S
G
S
P
S
N
I
T
R
V
E
T
T
L
P
L
L
G
Q
Q
H
D
L
I
T
M
M
K
R
T
S
P
HD
H
Q
T
H
A
Y
T
V
E
V
Y
V
E
S
D
D
K
L
G
L
T
E
K
F
T
Q
F
F
A
Q
R
Q
I
G
M
A
S
L
S
A
Q
T
I
---
S
------
N
Q
F
H
I
A
I
S
A
R
-
V
D
S
-
G
-
C
-
N
L
M
Q
L
Q
E
E
F
D
A
-
L
C
T
A
L
D
V
Q
G
S
L
N
F
I
K
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
HHSearch
53.79
19%
-123
- C2 -
-
3LOU
3
?
A:
[10-92]
-------------------------------------------------------------------------------------------
Q
F
V
L
T
L
S
C
P
S
A
A
G
Q
V
A
A
V
V
G
L
L
D
R
H
R
C
Y
V
D
E
L
T
V
F
D
D
DL-
S
------
A
R
F
F
V
R
C
V
F
H
-
A
T
D
---
L
-
R
V
D
A
L
R
R
E
F
E
P
-
I
A
E
R
F
R
M
Q
W
A
I
H
D
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
HHSearch
51.66
19%
-82
- C2 -
-
3NRB
1
?
D:
[7-86]
-------------------------------------------------------------------------------------------
Q
Y
V
L
S
L
A
C
Q
D
A
P
G
I
V
S
E
V
S
T
F
L
F
N
N
G
A
N
I
V
E
A
E
Q
F
N
D
---
E
DS----
S
K
F
F
M
R
V
S
V
E
-
I
P
V
---
A
-
G
V
N
D
F
N
S
A
F
G
K
-
V
V
E
K
Y
N
A
E
W
W
F
R
P
R
T
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
48
HHSearch
50.75
17%
-172
- C2 -
-
5V0S
-
?
A:
[1-65]
--------------------------------------------------------------------------------------------
H
D
L
Y
V
D
V
L
D
K
V
G
A
L
A
H
V
T
S
I
L
A
R
E
E
I
S
I
T
N
L
Q
I
L
E
A
---
R
------
E
G
L
L
G
V
L
R
I
S
-
F
Q
R
-
E
-
E
-
D
R
M
K
A
K
L
A
L
G
E
-
E
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
HHSearch
50.55
19%
-83
- C2 -
-
3NRB
1
?
B:
[7-88]
-------------------------------------------------------------------------------------------
Q
Y
V
L
S
L
A
C
Q
D
A
P
G
I
V
S
E
V
S
T
F
L
F
N
N
G
A
N
I
V
E
A
E
Q
F
N
D
---
E
DS----
S
K
F
F
M
R
V
S
V
E
-
I
P
V
---
A
-
G
V
N
D
F
N
S
A
F
G
K
-
V
V
E
K
Y
N
A
E
W
W
F
R
P
R
T
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
42
HHSearch
49.82
17%
-53
- C2 -
-
1U8S
-
?
B:
[94-180]
--------------------------------------------------------------------------------------------
V
E
V
Y
V
E
S
D
D
K
L
G
L
T
E
K
F
T
Q
F
F
A
Q
R
Q
I
G
M
A
S
L
S
A
Q
T
I
---
S
K-----
N
Q
F
H
I
A
I
S
A
R
-
V
D
S
-
G
-
C
-
N
L
M
Q
L
Q
E
E
F
D
A
-
L
C
T
A
L
D
V
Q
G
S
L
N
F
I
K
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
49.16
35%
-134
- C2 -
-
3W7B
-
?
A:
[3-55]
-------------------------------------------------------------------------------------------
E
A
R
L
L
V
T
C
P
D
R
P
G
I
V
A
A
V
S
G
F
L
Y
A
H
G
A
N
I
T
D
L
Q
Q
H
S
T
---
D
P
E
G
G
--
T
F
F
M
R
V
A
F
T
A
-
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
45.94
20%
-3
- C2 -
-
3P96
1
SERB_MYCA1
A:
[9-404]
----------------------------------------------------------------------------------------PK
V
S
V
L
I
T
V
T
G
V
D
Q
P
G
V
T
A
T
L
F
E
V
L
S
R
H
G
V
E
L
L
N
V
E
Q
V
V
I
---
R
------
H
R
L
T
L
G
V
L
V
C
C
P
A
D
-
V
-
A
-
D
G
P
A
L
R
H
D
V
E
A
-
A
I
R
K
V
G
L
D
V
S
I
E
R
S
D
D
V
P
I
I
R
E
P
ST
H
T
I
F
V
L
G
RPIT
A
A
A
F
G
A
V
A
R
E
V
A
A
L
GVNID
L
I
R
G
VSDYP
V
I
G
L
E
L
R
V
S
V
P
P
GA
D
E
A
L
R
T
A
L
N
R
V
S
S
E
E
H
V
D
V
A
V
E
D
YTLERRAKR
L
I
V
F
D
V
DSTLVQGE
V
I
E
M
L
A
A
K
A
GA
E
G
Q
V
A
A
I
T
D
A
A
M
R
GELD
F
A
Q
S
L
Q
Q
R
V
A
T
L
AGLPAT
V
I
D
E
V
A
G
Q
LELMPG
A
R
T
T
L
R
T
L
R
R
L
GYA
C
G
V
V
S
GGF
R
R
I
I
E
P
L
A
E
E
L
MLD
Y
V
A
A
N
E
L
E
I
V
DGTLTGRVVGPIID
R
A
G
K
A
T
A
L
R
E
F
A
Q
R
A
GVPMAQ
T
V
A
V
G
D
G
AND
I
D
M
L
A
A
AG
L
G
I
A
F
NAK
P
A
L
R
E
V
ADASLSHPYLD
T
V
L
F
L
L
GVT
R
G
E
I
E
A
A
D
A
I
D